data_7DJO # _model_server_result.job_id wnsghx5zdLEo1Rmn2ylbtQ _model_server_result.datetime_utc '2024-10-12 03:15:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7djo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7DJO # _exptl.entry_id 7DJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.492 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[2,7-dimethoxy-9-[[(3S)-pyrrolidin-3-yl]methylsulfanyl]acridin-4-yl]methanol' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DJO _cell.length_a 64.955 _cell.length_b 128.929 _cell.length_c 133.548 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 167 A THR 381 1_555 A N PTR 168 A PTR 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 168 A PTR 382 1_555 A N ILE 169 A ILE 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 243 A SER 457 1_555 A N SEP 244 A SEP 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SEP 244 A SEP 458 1_555 A N LYS 245 A LYS 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H24 N2 O3 S' _chem_comp.formula_weight 384.492 _chem_comp.id H80 _chem_comp.mon_nstd_flag . _chem_comp.name '[2,7-dimethoxy-9-[[(3S)-pyrrolidin-3-yl]methylsulfanyl]acridin-4-yl]methanol' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C01 H80 sing 129 n n O03 C05 H80 sing 130 n n C06 C05 H80 sing 131 n y C06 C07 H80 doub 132 n y C05 C04 H80 doub 133 n y C24 N23 H80 sing 134 n n C24 C25 H80 sing 135 n n C26 O27 H80 sing 136 n n C26 C07 H80 sing 137 n n N23 C22 H80 sing 138 n n C07 C09 H80 sing 139 n y C04 C08 H80 sing 140 n y C25 C21 H80 sing 141 n n C22 C21 H80 sing 142 n n C09 C08 H80 doub 143 n y C09 N10 H80 sing 144 n y C21 C20 H80 sing 145 n n C08 C18 H80 sing 146 n y N10 C13 H80 doub 147 n y C18 S19 H80 sing 148 n n C18 C12 H80 doub 149 n y C20 S19 H80 sing 150 n n C13 C12 H80 sing 151 n y C13 C14 H80 sing 152 n y C12 C11 H80 sing 153 n y C14 C15 H80 doub 154 n y C11 C16 H80 doub 155 n y C15 C16 H80 sing 156 n y C16 O02 H80 sing 157 n n O02 C17 H80 sing 158 n n C15 H1 H80 sing 159 n n C17 H2 H80 sing 160 n n C17 H3 H80 sing 161 n n C17 H4 H80 sing 162 n n C20 H5 H80 sing 163 n n C20 H6 H80 sing 164 n n C21 H7 H80 sing 165 n n C22 H8 H80 sing 166 n n C22 H9 H80 sing 167 n n C24 H10 H80 sing 168 n n C24 H11 H80 sing 169 n n C26 H12 H80 sing 170 n n C26 H13 H80 sing 171 n n C01 H14 H80 sing 172 n n C01 H15 H80 sing 173 n n C01 H16 H80 sing 174 n n C04 H17 H80 sing 175 n n C06 H18 H80 sing 176 n n C11 H19 H80 sing 177 n n C14 H20 H80 sing 178 n n C25 H21 H80 sing 179 n n C25 H22 H80 sing 180 n n N23 H23 H80 sing 181 n n O27 H25 H80 sing 182 n n # _atom_sites.entry_id 7DJO _atom_sites.fract_transf_matrix[1][1] 0.015395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 H80 A 1 601 1 H80 LIG . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 117 HOH HOH . C 3 HOH A 3 703 94 HOH HOH . C 3 HOH A 4 704 16 HOH HOH . C 3 HOH A 5 705 88 HOH HOH . C 3 HOH A 6 706 28 HOH HOH . C 3 HOH A 7 707 78 HOH HOH . C 3 HOH A 8 708 5 HOH HOH . C 3 HOH A 9 709 80 HOH HOH . C 3 HOH A 10 710 62 HOH HOH . C 3 HOH A 11 711 52 HOH HOH . C 3 HOH A 12 712 6 HOH HOH . C 3 HOH A 13 713 90 HOH HOH . C 3 HOH A 14 714 63 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 18 HOH HOH . C 3 HOH A 17 717 37 HOH HOH . C 3 HOH A 18 718 39 HOH HOH . C 3 HOH A 19 719 23 HOH HOH . C 3 HOH A 20 720 83 HOH HOH . C 3 HOH A 21 721 4 HOH HOH . C 3 HOH A 22 722 43 HOH HOH . C 3 HOH A 23 723 89 HOH HOH . C 3 HOH A 24 724 99 HOH HOH . C 3 HOH A 25 725 7 HOH HOH . C 3 HOH A 26 726 77 HOH HOH . C 3 HOH A 27 727 85 HOH HOH . C 3 HOH A 28 728 30 HOH HOH . C 3 HOH A 29 729 44 HOH HOH . C 3 HOH A 30 730 3 HOH HOH . C 3 HOH A 31 731 20 HOH HOH . C 3 HOH A 32 732 48 HOH HOH . C 3 HOH A 33 733 36 HOH HOH . C 3 HOH A 34 734 31 HOH HOH . C 3 HOH A 35 735 57 HOH HOH . C 3 HOH A 36 736 27 HOH HOH . C 3 HOH A 37 737 8 HOH HOH . C 3 HOH A 38 738 114 HOH HOH . C 3 HOH A 39 739 74 HOH HOH . C 3 HOH A 40 740 97 HOH HOH . C 3 HOH A 41 741 2 HOH HOH . C 3 HOH A 42 742 29 HOH HOH . C 3 HOH A 43 743 11 HOH HOH . C 3 HOH A 44 744 17 HOH HOH . C 3 HOH A 45 745 103 HOH HOH . C 3 HOH A 46 746 41 HOH HOH . C 3 HOH A 47 747 58 HOH HOH . C 3 HOH A 48 748 38 HOH HOH . C 3 HOH A 49 749 110 HOH HOH . C 3 HOH A 50 750 26 HOH HOH . C 3 HOH A 51 751 50 HOH HOH . C 3 HOH A 52 752 35 HOH HOH . C 3 HOH A 53 753 66 HOH HOH . C 3 HOH A 54 754 53 HOH HOH . C 3 HOH A 55 755 59 HOH HOH . C 3 HOH A 56 756 10 HOH HOH . C 3 HOH A 57 757 76 HOH HOH . C 3 HOH A 58 758 40 HOH HOH . C 3 HOH A 59 759 49 HOH HOH . C 3 HOH A 60 760 70 HOH HOH . C 3 HOH A 61 761 56 HOH HOH . C 3 HOH A 62 762 81 HOH HOH . C 3 HOH A 63 763 54 HOH HOH . C 3 HOH A 64 764 21 HOH HOH . C 3 HOH A 65 765 68 HOH HOH . C 3 HOH A 66 766 47 HOH HOH . C 3 HOH A 67 767 91 HOH HOH . C 3 HOH A 68 768 111 HOH HOH . C 3 HOH A 69 769 64 HOH HOH . C 3 HOH A 70 770 13 HOH HOH . C 3 HOH A 71 771 112 HOH HOH . C 3 HOH A 72 772 61 HOH HOH . C 3 HOH A 73 773 96 HOH HOH . C 3 HOH A 74 774 116 HOH HOH . C 3 HOH A 75 775 33 HOH HOH . C 3 HOH A 76 776 42 HOH HOH . C 3 HOH A 77 777 45 HOH HOH . C 3 HOH A 78 778 24 HOH HOH . C 3 HOH A 79 779 72 HOH HOH . C 3 HOH A 80 780 101 HOH HOH . C 3 HOH A 81 781 32 HOH HOH . C 3 HOH A 82 782 25 HOH HOH . C 3 HOH A 83 783 73 HOH HOH . C 3 HOH A 84 784 105 HOH HOH . C 3 HOH A 85 785 98 HOH HOH . C 3 HOH A 86 786 60 HOH HOH . C 3 HOH A 87 787 92 HOH HOH . C 3 HOH A 88 788 22 HOH HOH . C 3 HOH A 89 789 34 HOH HOH . C 3 HOH A 90 790 86 HOH HOH . C 3 HOH A 91 791 84 HOH HOH . C 3 HOH A 92 792 75 HOH HOH . C 3 HOH A 93 793 113 HOH HOH . C 3 HOH A 94 794 106 HOH HOH . C 3 HOH A 95 795 65 HOH HOH . C 3 HOH A 96 796 82 HOH HOH . C 3 HOH A 97 797 100 HOH HOH . C 3 HOH A 98 798 51 HOH HOH . C 3 HOH A 99 799 55 HOH HOH . C 3 HOH A 100 800 79 HOH HOH . C 3 HOH A 101 801 69 HOH HOH . C 3 HOH A 102 802 14 HOH HOH . C 3 HOH A 103 803 95 HOH HOH . C 3 HOH A 104 804 46 HOH HOH . C 3 HOH A 105 805 104 HOH HOH . C 3 HOH A 106 806 108 HOH HOH . C 3 HOH A 107 807 115 HOH HOH . C 3 HOH A 108 808 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 H80 . . . B 2 83.512 145.081 17.201 1 22.86 ? C13 H80 601 A 1 HETATM 2 C C15 H80 . . . B 2 82.364 146.373 19.135 1 34.83 ? C15 H80 601 A 1 HETATM 3 C C17 H80 . . . B 2 79.778 144.216 20.888 1 46.27 ? C17 H80 601 A 1 HETATM 4 C C20 H80 . . . B 2 80.195 141.451 16.882 1 46.09 ? C20 H80 601 A 1 HETATM 5 C C21 H80 . . . B 2 79.856 141.476 15.39 1 55.39 ? C21 H80 601 A 1 HETATM 6 C C22 H80 . . . B 2 78.371 141.129 15.073 1 60.31 ? C22 H80 601 A 1 HETATM 7 C C24 H80 . . . B 2 79.623 139.758 13.648 1 58.03 ? C24 H80 601 A 1 HETATM 8 C C26 H80 . . . B 2 86.48 145.121 13.688 1 49.6 ? C26 H80 601 A 1 HETATM 9 C C01 H80 . . . B 2 84.649 138.973 13.287 1 34.56 ? C01 H80 601 A 1 HETATM 10 C C04 H80 . . . B 2 84.216 141.438 14.706 1 35.48 ? C04 H80 601 A 1 HETATM 11 C C05 H80 . . . B 2 85.107 141.395 13.617 1 44.66 ? C05 H80 601 A 1 HETATM 12 C C06 H80 . . . B 2 85.841 142.664 13.324 1 49.85 ? C06 H80 601 A 1 HETATM 13 C C07 H80 . . . B 2 85.655 143.843 14.084 1 43.27 ? C07 H80 601 A 1 HETATM 14 C C08 H80 . . . B 2 83.92 142.623 15.615 1 36.98 ? C08 H80 601 A 1 HETATM 15 C C09 H80 . . . B 2 84.644 143.866 15.312 1 36.16 ? C09 H80 601 A 1 HETATM 16 C C11 H80 . . . B 2 81.817 144.093 18.759 1 31.71 ? C11 H80 601 A 1 HETATM 17 C C12 H80 . . . B 2 82.739 143.914 17.577 1 29.25 ? C12 H80 601 A 1 HETATM 18 C C14 H80 . . . B 2 83.237 146.29 18.067 1 29.25 ? C14 H80 601 A 1 HETATM 19 C C16 H80 . . . B 2 81.583 145.222 19.544 1 34.67 ? C16 H80 601 A 1 HETATM 20 C C18 H80 . . . B 2 83.039 142.761 16.724 1 35.46 ? C18 H80 601 A 1 HETATM 21 C C25 H80 . . . B 2 80.605 140.227 14.742 1 54.31 ? C25 H80 601 A 1 HETATM 22 N N10 H80 . . . B 2 84.383 144.953 16.112 1 32.45 ? N10 H80 601 A 1 HETATM 23 N N23 H80 . . . B 2 78.365 140.459 13.739 1 64.18 ? N23 H80 601 A 1 HETATM 24 O O02 H80 . . . B 2 80.706 145.274 20.613 1 40.41 ? O02 H80 601 A 1 HETATM 25 O O03 H80 . . . B 2 85.275 140.224 12.891 1 40.35 ? O03 H80 601 A 1 HETATM 26 O O27 H80 . . . B 2 85.887 146.359 14.012 1 41.04 ? O27 H80 601 A 1 HETATM 27 S S19 H80 . . . B 2 82.056 141.284 17.196 1 40.8 ? S19 H80 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #