data_7DJT
#
_model_server_result.job_id            '_oI6ulxCnwqUocQEoUJedA' 
_model_server_result.datetime_utc      '2024-11-21 23:01:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7djt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1001}' 
#
_entry.id    7DJT 
#
_exptl.entry_id    7DJT 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              372.415 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'O3-methyl O5-(2-methylpropyl) 2,6-dimethyl-4-[2-(oxidanylamino)phenyl]pyridine-3,5-dicarboxylate' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DJT 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DJT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ARG 284 A ARG 310 1_555 A N VI3 285 A VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C VI3 285 A VI3 311 1_555 A N LEU 286 A LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale3 A SG VI3 285 A VI3 311 1_555 I NZ H8L . A H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
covale ? covale4 B C ARG 284 B ARG 310 1_555 B N VI3 285 B VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 B C VI3 285 B VI3 311 1_555 B N LEU 286 B LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale6 B SG VI3 285 B VI3 311 1_555 J NZ H8L . B H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
covale ? covale7 C C ARG 284 C ARG 310 1_555 C N VI3 285 C VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale8 C C VI3 285 C VI3 311 1_555 C N LEU 286 C LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale9 C SG VI3 285 C VI3 311 1_555 K NZ H8L . C H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
covale ? covale10 D C ARG 284 D ARG 310 1_555 D N VI3 285 D VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 D C VI3 285 D VI3 311 1_555 D N LEU 286 D LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale12 D SG VI3 285 D VI3 311 1_555 L NZ H8L . D H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
covale ? covale13 E C ARG 284 E ARG 310 1_555 E N VI3 285 E VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale14 E C VI3 285 E VI3 311 1_555 E N LEU 286 E LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale15 E SG VI3 285 E VI3 311 1_555 M NZ H8L . E H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
covale ? covale16 F C ARG 284 F ARG 310 1_555 F N VI3 285 F VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale17 F C VI3 285 F VI3 311 1_555 F N LEU 286 F LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale18 F SG VI3 285 F VI3 311 1_555 N NZ H8L . F H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
covale ? covale19 G C ARG 284 G ARG 310 1_555 G N VI3 285 G VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale20 G C VI3 285 G VI3 311 1_555 G N LEU 286 G LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale21 G SG VI3 285 G VI3 311 1_555 O NZ H8L . G H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
covale ? covale22 H C ARG 284 H ARG 310 1_555 H N VI3 285 H VI3 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale23 H C VI3 285 H VI3 311 1_555 H N LEU 286 H LEU 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale24 H SG VI3 285 H VI3 311 1_555 P NZ H8L . H H8L 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
#
_chem_comp.formula           'C20 H24 N2 O5' 
_chem_comp.formula_weight    372.415 
_chem_comp.id                H8L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'O3-methyl O5-(2-methylpropyl) 2,6-dimethyl-4-[2-(oxidanylamino)phenyl]pyridine-3,5-dicarboxylate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 H8L doub 129 n y 
C9 C10 H8L sing 130 n y 
C8 CE H8L sing 131 n y 
C10 C11 H8L doub 132 n y 
CE NZ H8L sing 133 n n 
CE CD H8L doub 134 n y 
C11 CD H8L sing 135 n y 
C19 C18 H8L sing 136 n n 
C15 O1 H8L sing 137 n n 
NZ O5 H8L sing 138 n n 
CD CG H8L sing 139 n n 
O4 C14 H8L doub 140 n n 
O1 C14 H8L sing 141 n n 
C14 C4 H8L sing 142 n n 
C18 C20 H8L sing 143 n n 
C18 C17 H8L sing 144 n n 
O2 C16 H8L sing 145 n n 
O2 C17 H8L sing 146 n n 
CG C4 H8L doub 147 n y 
CG CB H8L sing 148 n y 
C16 O3 H8L doub 149 n n 
C16 CB H8L sing 150 n n 
C4 C5 H8L sing 151 n y 
CB CA H8L doub 152 n y 
C5 C13 H8L sing 153 n n 
C5 N H8L doub 154 n y 
CA N H8L sing 155 n y 
CA C H8L sing 156 n n 
C8 H1 H8L sing 157 n n 
C10 H2 H8L sing 158 n n 
C13 H3 H8L sing 159 n n 
C13 H4 H8L sing 160 n n 
C13 H5 H8L sing 161 n n 
C15 H6 H8L sing 162 n n 
C15 H7 H8L sing 163 n n 
C15 H8 H8L sing 164 n n 
C17 H9 H8L sing 165 n n 
C17 H10 H8L sing 166 n n 
C20 H11 H8L sing 167 n n 
C20 H12 H8L sing 168 n n 
C20 H13 H8L sing 169 n n 
C H14 H8L sing 170 n n 
C H15 H8L sing 171 n n 
C H16 H8L sing 172 n n 
NZ H17 H8L sing 173 n n 
C11 H18 H8L sing 174 n n 
C18 H19 H8L sing 175 n n 
C19 H20 H8L sing 176 n n 
C19 H21 H8L sing 177 n n 
C19 H22 H8L sing 178 n n 
C9 H23 H8L sing 179 n n 
O5 H24 H8L sing 180 n n 
#
_atom_sites.entry_id                     7DJT 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 H8L A 1 1001 1001 H8L H8L . 
J 2 H8L B 1 1001 1001 H8L H8L . 
K 2 H8L C 1 1001 1001 H8L H8L . 
L 2 H8L D 1 1001 1001 H8L H8L . 
M 2 H8L E 1 1001 1001 H8L H8L . 
N 2 H8L F 1 1001 1001 H8L H8L . 
O 2 H8L G 1 1001 1001 H8L H8L . 
P 2 H8L H 1 1001 1001 H8L H8L . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 H8L . . . K 2 231.758 132.274 148.442 1 123.78 ? C4 H8L 1001 C 1 
HETATM 2 C C5 H8L . . . K 2 231.871 132.343 149.811 1 123.78 ? C5 H8L 1001 C 1 
HETATM 3 C C8 H8L . . . K 2 230.808 129.857 144.31 1 123.78 ? C8 H8L 1001 C 1 
HETATM 4 C C10 H8L . . . K 2 232.666 131.302 144.283 1 123.78 ? C10 H8L 1001 C 1 
HETATM 5 C C13 H8L . . . K 2 231.979 133.664 150.481 1 123.78 ? C13 H8L 1001 C 1 
HETATM 6 C C15 H8L . . . K 2 233.894 133.61 147.085 1 123.78 ? C15 H8L 1001 C 1 
HETATM 7 C C17 H8L . . . K 2 230.588 126.702 148.66 1 123.78 ? C17 H8L 1001 C 1 
HETATM 8 C C20 H8L . . . K 2 228.326 126.803 147.792 1 123.78 ? C20 H8L 1001 C 1 
HETATM 9 N N H8L . . . K 2 231.901 131.279 150.61 1 123.78 ? N H8L 1001 C 1 
HETATM 10 C CA H8L . . . K 2 231.808 130.102 150.005 1 123.78 ? CA H8L 1001 C 1 
HETATM 11 C C H8L . . . K 2 231.833 128.901 150.876 1 123.78 ? C H8L 1001 C 1 
HETATM 12 C CB H8L . . . K 2 231.688 129.973 148.647 1 123.78 ? CB H8L 1001 C 1 
HETATM 13 C CG H8L . . . K 2 231.632 131.047 147.793 1 123.78 ? CG H8L 1001 C 1 
HETATM 14 C CD H8L . . . K 2 231.545 130.793 146.369 1 123.78 ? CD H8L 1001 C 1 
HETATM 15 C CE H8L . . . K 2 230.671 129.945 145.679 1 123.78 ? CE H8L 1001 C 1 
HETATM 16 N NZ H8L . . . K 2 229.564 129.218 146.214 1 123.78 ? NZ H8L 1001 C 1 
HETATM 17 C C11 H8L . . . K 2 232.531 131.417 145.642 1 123.78 ? C11 H8L 1001 C 1 
HETATM 18 C C14 H8L . . . K 2 231.762 133.597 147.807 1 123.78 ? C14 H8L 1001 C 1 
HETATM 19 C C16 H8L . . . K 2 231.595 128.632 148.1 1 123.78 ? C16 H8L 1001 C 1 
HETATM 20 C C18 H8L . . . K 2 229.658 126.124 147.629 1 123.78 ? C18 H8L 1001 C 1 
HETATM 21 C C19 H8L . . . K 2 230.199 126.405 146.25 1 123.78 ? C19 H8L 1001 C 1 
HETATM 22 C C9 H8L . . . K 2 231.783 130.508 143.6 1 123.78 ? C9 H8L 1001 C 1 
HETATM 23 O O1 H8L . . . K 2 232.975 134.164 148.008 1 123.78 ? O1 H8L 1001 C 1 
HETATM 24 O O2 H8L . . . K 2 230.446 128.109 148.584 1 123.78 ? O2 H8L 1001 C 1 
HETATM 25 O O3 H8L . . . K 2 232.412 128.117 147.351 1 123.78 ? O3 H8L 1001 C 1 
HETATM 26 O O4 H8L . . . K 2 230.814 134.081 147.209 1 123.78 ? O4 H8L 1001 C 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#