data_7DKI
#
_model_server_result.job_id            qNHPSVXDh3L1N_UUt-mifQ 
_model_server_result.datetime_utc      '2024-11-14 03:15:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dki 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    7DKI 
#
_exptl.entry_id    7DKI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DKI 
_cell.length_a            52.409 
_cell.length_b            52.409 
_cell.length_c            77.109 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DKI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     7DKI 
_atom_sites.fract_transf_matrix[1][1]    0.019081 
_atom_sites.fract_transf_matrix[1][2]    0.011016 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 1 GOL GOL . 
D 2 GOL B 1 201 2 GOL GOL . 
E 3 HOH A 1 301 158 HOH HOH . 
E 3 HOH A 2 302 105 HOH HOH . 
E 3 HOH A 3 303 171 HOH HOH . 
E 3 HOH A 4 304 110 HOH HOH . 
E 3 HOH A 5 305 144 HOH HOH . 
E 3 HOH A 6 306 12 HOH HOH . 
E 3 HOH A 7 307 134 HOH HOH . 
E 3 HOH A 8 308 166 HOH HOH . 
E 3 HOH A 9 309 18 HOH HOH . 
E 3 HOH A 10 310 47 HOH HOH . 
E 3 HOH A 11 311 161 HOH HOH . 
E 3 HOH A 12 312 123 HOH HOH . 
E 3 HOH A 13 313 115 HOH HOH . 
E 3 HOH A 14 314 13 HOH HOH . 
E 3 HOH A 15 315 207 HOH HOH . 
E 3 HOH A 16 316 104 HOH HOH . 
E 3 HOH A 17 317 80 HOH HOH . 
E 3 HOH A 18 318 40 HOH HOH . 
E 3 HOH A 19 319 21 HOH HOH . 
E 3 HOH A 20 320 179 HOH HOH . 
E 3 HOH A 21 321 17 HOH HOH . 
E 3 HOH A 22 322 6 HOH HOH . 
E 3 HOH A 23 323 156 HOH HOH . 
E 3 HOH A 24 324 191 HOH HOH . 
E 3 HOH A 25 325 86 HOH HOH . 
E 3 HOH A 26 326 170 HOH HOH . 
E 3 HOH A 27 327 73 HOH HOH . 
E 3 HOH A 28 328 140 HOH HOH . 
E 3 HOH A 29 329 33 HOH HOH . 
E 3 HOH A 30 330 74 HOH HOH . 
E 3 HOH A 31 331 15 HOH HOH . 
E 3 HOH A 32 332 4 HOH HOH . 
E 3 HOH A 33 333 102 HOH HOH . 
E 3 HOH A 34 334 44 HOH HOH . 
E 3 HOH A 35 335 48 HOH HOH . 
E 3 HOH A 36 336 99 HOH HOH . 
E 3 HOH A 37 337 56 HOH HOH . 
E 3 HOH A 38 338 26 HOH HOH . 
E 3 HOH A 39 339 169 HOH HOH . 
E 3 HOH A 40 340 52 HOH HOH . 
E 3 HOH A 41 341 84 HOH HOH . 
E 3 HOH A 42 342 64 HOH HOH . 
E 3 HOH A 43 343 148 HOH HOH . 
E 3 HOH A 44 344 160 HOH HOH . 
E 3 HOH A 45 345 43 HOH HOH . 
E 3 HOH A 46 346 82 HOH HOH . 
E 3 HOH A 47 347 71 HOH HOH . 
E 3 HOH A 48 348 8 HOH HOH . 
E 3 HOH A 49 349 78 HOH HOH . 
E 3 HOH A 50 350 178 HOH HOH . 
E 3 HOH A 51 351 51 HOH HOH . 
E 3 HOH A 52 352 60 HOH HOH . 
E 3 HOH A 53 353 197 HOH HOH . 
E 3 HOH A 54 354 111 HOH HOH . 
E 3 HOH A 55 355 38 HOH HOH . 
E 3 HOH A 56 356 42 HOH HOH . 
E 3 HOH A 57 357 25 HOH HOH . 
E 3 HOH A 58 358 143 HOH HOH . 
E 3 HOH A 59 359 11 HOH HOH . 
E 3 HOH A 60 360 149 HOH HOH . 
E 3 HOH A 61 361 95 HOH HOH . 
E 3 HOH A 62 362 23 HOH HOH . 
E 3 HOH A 63 363 133 HOH HOH . 
E 3 HOH A 64 364 66 HOH HOH . 
E 3 HOH A 65 365 181 HOH HOH . 
E 3 HOH A 66 366 189 HOH HOH . 
E 3 HOH A 67 367 157 HOH HOH . 
E 3 HOH A 68 368 72 HOH HOH . 
E 3 HOH A 69 369 90 HOH HOH . 
E 3 HOH A 70 370 85 HOH HOH . 
E 3 HOH A 71 371 87 HOH HOH . 
E 3 HOH A 72 372 126 HOH HOH . 
E 3 HOH A 73 373 68 HOH HOH . 
E 3 HOH A 74 374 81 HOH HOH . 
E 3 HOH A 75 375 152 HOH HOH . 
E 3 HOH A 76 376 136 HOH HOH . 
E 3 HOH A 77 377 195 HOH HOH . 
E 3 HOH A 78 378 36 HOH HOH . 
E 3 HOH A 79 379 120 HOH HOH . 
E 3 HOH A 80 380 135 HOH HOH . 
E 3 HOH A 81 381 201 HOH HOH . 
E 3 HOH A 82 382 182 HOH HOH . 
E 3 HOH A 83 383 175 HOH HOH . 
E 3 HOH A 84 384 173 HOH HOH . 
E 3 HOH A 85 385 172 HOH HOH . 
E 3 HOH A 86 386 192 HOH HOH . 
E 3 HOH A 87 387 155 HOH HOH . 
E 3 HOH A 88 388 109 HOH HOH . 
E 3 HOH A 89 389 100 HOH HOH . 
E 3 HOH A 90 390 122 HOH HOH . 
E 3 HOH A 91 391 167 HOH HOH . 
E 3 HOH A 92 392 138 HOH HOH . 
E 3 HOH A 93 393 151 HOH HOH . 
E 3 HOH A 94 394 154 HOH HOH . 
E 3 HOH A 95 395 142 HOH HOH . 
E 3 HOH A 96 396 187 HOH HOH . 
E 3 HOH A 97 397 176 HOH HOH . 
E 3 HOH A 98 398 103 HOH HOH . 
E 3 HOH A 99 399 117 HOH HOH . 
F 3 HOH B 1 301 57 HOH HOH . 
F 3 HOH B 2 302 70 HOH HOH . 
F 3 HOH B 3 303 9 HOH HOH . 
F 3 HOH B 4 304 31 HOH HOH . 
F 3 HOH B 5 305 93 HOH HOH . 
F 3 HOH B 6 306 88 HOH HOH . 
F 3 HOH B 7 307 7 HOH HOH . 
F 3 HOH B 8 308 2 HOH HOH . 
F 3 HOH B 9 309 98 HOH HOH . 
F 3 HOH B 10 310 24 HOH HOH . 
F 3 HOH B 11 311 116 HOH HOH . 
F 3 HOH B 12 312 108 HOH HOH . 
F 3 HOH B 13 313 83 HOH HOH . 
F 3 HOH B 14 314 174 HOH HOH . 
F 3 HOH B 15 315 67 HOH HOH . 
F 3 HOH B 16 316 77 HOH HOH . 
F 3 HOH B 17 317 194 HOH HOH . 
F 3 HOH B 18 318 65 HOH HOH . 
F 3 HOH B 19 319 34 HOH HOH . 
F 3 HOH B 20 320 29 HOH HOH . 
F 3 HOH B 21 321 89 HOH HOH . 
F 3 HOH B 22 322 153 HOH HOH . 
F 3 HOH B 23 323 185 HOH HOH . 
F 3 HOH B 24 324 204 HOH HOH . 
F 3 HOH B 25 325 61 HOH HOH . 
F 3 HOH B 26 326 30 HOH HOH . 
F 3 HOH B 27 327 20 HOH HOH . 
F 3 HOH B 28 328 45 HOH HOH . 
F 3 HOH B 29 329 124 HOH HOH . 
F 3 HOH B 30 330 184 HOH HOH . 
F 3 HOH B 31 331 121 HOH HOH . 
F 3 HOH B 32 332 150 HOH HOH . 
F 3 HOH B 33 333 10 HOH HOH . 
F 3 HOH B 34 334 139 HOH HOH . 
F 3 HOH B 35 335 37 HOH HOH . 
F 3 HOH B 36 336 50 HOH HOH . 
F 3 HOH B 37 337 1 HOH HOH . 
F 3 HOH B 38 338 49 HOH HOH . 
F 3 HOH B 39 339 92 HOH HOH . 
F 3 HOH B 40 340 186 HOH HOH . 
F 3 HOH B 41 341 75 HOH HOH . 
F 3 HOH B 42 342 63 HOH HOH . 
F 3 HOH B 43 343 16 HOH HOH . 
F 3 HOH B 44 344 69 HOH HOH . 
F 3 HOH B 45 345 130 HOH HOH . 
F 3 HOH B 46 346 28 HOH HOH . 
F 3 HOH B 47 347 46 HOH HOH . 
F 3 HOH B 48 348 19 HOH HOH . 
F 3 HOH B 49 349 39 HOH HOH . 
F 3 HOH B 50 350 165 HOH HOH . 
F 3 HOH B 51 351 27 HOH HOH . 
F 3 HOH B 52 352 132 HOH HOH . 
F 3 HOH B 53 353 164 HOH HOH . 
F 3 HOH B 54 354 59 HOH HOH . 
F 3 HOH B 55 355 193 HOH HOH . 
F 3 HOH B 56 356 94 HOH HOH . 
F 3 HOH B 57 357 32 HOH HOH . 
F 3 HOH B 58 358 58 HOH HOH . 
F 3 HOH B 59 359 97 HOH HOH . 
F 3 HOH B 60 360 96 HOH HOH . 
F 3 HOH B 61 361 199 HOH HOH . 
F 3 HOH B 62 362 101 HOH HOH . 
F 3 HOH B 63 363 141 HOH HOH . 
F 3 HOH B 64 364 129 HOH HOH . 
F 3 HOH B 65 365 41 HOH HOH . 
F 3 HOH B 66 366 162 HOH HOH . 
F 3 HOH B 67 367 203 HOH HOH . 
F 3 HOH B 68 368 54 HOH HOH . 
F 3 HOH B 69 369 106 HOH HOH . 
F 3 HOH B 70 370 180 HOH HOH . 
F 3 HOH B 71 371 125 HOH HOH . 
F 3 HOH B 72 372 198 HOH HOH . 
F 3 HOH B 73 373 113 HOH HOH . 
F 3 HOH B 74 374 145 HOH HOH . 
F 3 HOH B 75 375 114 HOH HOH . 
F 3 HOH B 76 376 35 HOH HOH . 
F 3 HOH B 77 377 202 HOH HOH . 
F 3 HOH B 78 378 177 HOH HOH . 
F 3 HOH B 79 379 205 HOH HOH . 
F 3 HOH B 80 380 146 HOH HOH . 
F 3 HOH B 81 381 107 HOH HOH . 
F 3 HOH B 82 382 112 HOH HOH . 
F 3 HOH B 83 383 163 HOH HOH . 
F 3 HOH B 84 384 168 HOH HOH . 
F 3 HOH B 85 385 76 HOH HOH . 
F 3 HOH B 86 386 91 HOH HOH . 
F 3 HOH B 87 387 206 HOH HOH . 
F 3 HOH B 88 388 159 HOH HOH . 
F 3 HOH B 89 389 200 HOH HOH . 
F 3 HOH B 90 390 183 HOH HOH . 
F 3 HOH B 91 391 128 HOH HOH . 
F 3 HOH B 92 392 131 HOH HOH . 
F 3 HOH B 93 393 62 HOH HOH . 
F 3 HOH B 94 394 188 HOH HOH . 
F 3 HOH B 95 395 137 HOH HOH . 
F 3 HOH B 96 396 196 HOH HOH . 
F 3 HOH B 97 397 147 HOH HOH . 
F 3 HOH B 98 398 53 HOH HOH . 
F 3 HOH B 99 399 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 2 20.688 47.574 37.779 1 21.92 ? C1 GOL 201 A 1 
HETATM 2 O O1 GOL . . . C 2 20.876 48.917 38 1 20.95 ? O1 GOL 201 A 1 
HETATM 3 C C2 GOL . . . C 2 20.856 47.132 36.25 1 24.21 ? C2 GOL 201 A 1 
HETATM 4 O O2 GOL . . . C 2 22.123 47.195 35.783 1 35.37 ? O2 GOL 201 A 1 
HETATM 5 C C3 GOL . . . C 2 20.3 45.697 36.502 1 21.44 ? C3 GOL 201 A 1 
HETATM 6 O O3 GOL . . . C 2 20.442 44.889 35.405 1 26.27 ? O3 GOL 201 A 1 
HETATM 7 H H11 GOL . . . C 2 19.803 47.295 38.061 1 26.31 ? H11 GOL 201 A 1 
HETATM 8 H H12 GOL . . . C 2 21.312 47.045 38.3 1 26.31 ? H12 GOL 201 A 1 
HETATM 9 H HO1 GOL . . . C 2 20.121 49.289 37.88 1 25.14 ? HO1 GOL 201 A 1 
HETATM 10 H H2 GOL . . . C 2 20.409 47.667 35.575 1 29.05 ? H2 GOL 201 A 1 
HETATM 11 H HO2 GOL . . . C 2 22.646 46.974 36.415 1 42.44 ? HO2 GOL 201 A 1 
HETATM 12 H H31 GOL . . . C 2 19.373 45.792 36.771 1 25.72 ? H31 GOL 201 A 1 
HETATM 13 H H32 GOL . . . C 2 20.758 45.344 37.28 1 25.72 ? H32 GOL 201 A 1 
HETATM 14 H HO3 GOL . . . C 2 20.733 44.143 35.688 1 31.52 ? HO3 GOL 201 A 1 
#
_model_server_stats.io_time_ms              65 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#