data_7DKI # _model_server_result.job_id AkQpXUwx2yE7YmBr0dpL5g _model_server_result.datetime_utc '2024-11-14 03:40:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 7DKI # _exptl.entry_id 7DKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DKI _cell.length_a 52.409 _cell.length_b 52.409 _cell.length_c 77.109 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7DKI _atom_sites.fract_transf_matrix[1][1] 0.019081 _atom_sites.fract_transf_matrix[1][2] 0.011016 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022032 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 1 GOL GOL . D 2 GOL B 1 201 2 GOL GOL . E 3 HOH A 1 301 158 HOH HOH . E 3 HOH A 2 302 105 HOH HOH . E 3 HOH A 3 303 171 HOH HOH . E 3 HOH A 4 304 110 HOH HOH . E 3 HOH A 5 305 144 HOH HOH . E 3 HOH A 6 306 12 HOH HOH . E 3 HOH A 7 307 134 HOH HOH . E 3 HOH A 8 308 166 HOH HOH . E 3 HOH A 9 309 18 HOH HOH . E 3 HOH A 10 310 47 HOH HOH . E 3 HOH A 11 311 161 HOH HOH . E 3 HOH A 12 312 123 HOH HOH . E 3 HOH A 13 313 115 HOH HOH . E 3 HOH A 14 314 13 HOH HOH . E 3 HOH A 15 315 207 HOH HOH . E 3 HOH A 16 316 104 HOH HOH . E 3 HOH A 17 317 80 HOH HOH . E 3 HOH A 18 318 40 HOH HOH . E 3 HOH A 19 319 21 HOH HOH . E 3 HOH A 20 320 179 HOH HOH . E 3 HOH A 21 321 17 HOH HOH . E 3 HOH A 22 322 6 HOH HOH . E 3 HOH A 23 323 156 HOH HOH . E 3 HOH A 24 324 191 HOH HOH . E 3 HOH A 25 325 86 HOH HOH . E 3 HOH A 26 326 170 HOH HOH . E 3 HOH A 27 327 73 HOH HOH . E 3 HOH A 28 328 140 HOH HOH . E 3 HOH A 29 329 33 HOH HOH . E 3 HOH A 30 330 74 HOH HOH . E 3 HOH A 31 331 15 HOH HOH . E 3 HOH A 32 332 4 HOH HOH . E 3 HOH A 33 333 102 HOH HOH . E 3 HOH A 34 334 44 HOH HOH . E 3 HOH A 35 335 48 HOH HOH . E 3 HOH A 36 336 99 HOH HOH . E 3 HOH A 37 337 56 HOH HOH . E 3 HOH A 38 338 26 HOH HOH . E 3 HOH A 39 339 169 HOH HOH . E 3 HOH A 40 340 52 HOH HOH . E 3 HOH A 41 341 84 HOH HOH . E 3 HOH A 42 342 64 HOH HOH . E 3 HOH A 43 343 148 HOH HOH . E 3 HOH A 44 344 160 HOH HOH . E 3 HOH A 45 345 43 HOH HOH . E 3 HOH A 46 346 82 HOH HOH . E 3 HOH A 47 347 71 HOH HOH . E 3 HOH A 48 348 8 HOH HOH . E 3 HOH A 49 349 78 HOH HOH . E 3 HOH A 50 350 178 HOH HOH . E 3 HOH A 51 351 51 HOH HOH . E 3 HOH A 52 352 60 HOH HOH . E 3 HOH A 53 353 197 HOH HOH . E 3 HOH A 54 354 111 HOH HOH . E 3 HOH A 55 355 38 HOH HOH . E 3 HOH A 56 356 42 HOH HOH . E 3 HOH A 57 357 25 HOH HOH . E 3 HOH A 58 358 143 HOH HOH . E 3 HOH A 59 359 11 HOH HOH . E 3 HOH A 60 360 149 HOH HOH . E 3 HOH A 61 361 95 HOH HOH . E 3 HOH A 62 362 23 HOH HOH . E 3 HOH A 63 363 133 HOH HOH . E 3 HOH A 64 364 66 HOH HOH . E 3 HOH A 65 365 181 HOH HOH . E 3 HOH A 66 366 189 HOH HOH . E 3 HOH A 67 367 157 HOH HOH . E 3 HOH A 68 368 72 HOH HOH . E 3 HOH A 69 369 90 HOH HOH . E 3 HOH A 70 370 85 HOH HOH . E 3 HOH A 71 371 87 HOH HOH . E 3 HOH A 72 372 126 HOH HOH . E 3 HOH A 73 373 68 HOH HOH . E 3 HOH A 74 374 81 HOH HOH . E 3 HOH A 75 375 152 HOH HOH . E 3 HOH A 76 376 136 HOH HOH . E 3 HOH A 77 377 195 HOH HOH . E 3 HOH A 78 378 36 HOH HOH . E 3 HOH A 79 379 120 HOH HOH . E 3 HOH A 80 380 135 HOH HOH . E 3 HOH A 81 381 201 HOH HOH . E 3 HOH A 82 382 182 HOH HOH . E 3 HOH A 83 383 175 HOH HOH . E 3 HOH A 84 384 173 HOH HOH . E 3 HOH A 85 385 172 HOH HOH . E 3 HOH A 86 386 192 HOH HOH . E 3 HOH A 87 387 155 HOH HOH . E 3 HOH A 88 388 109 HOH HOH . E 3 HOH A 89 389 100 HOH HOH . E 3 HOH A 90 390 122 HOH HOH . E 3 HOH A 91 391 167 HOH HOH . E 3 HOH A 92 392 138 HOH HOH . E 3 HOH A 93 393 151 HOH HOH . E 3 HOH A 94 394 154 HOH HOH . E 3 HOH A 95 395 142 HOH HOH . E 3 HOH A 96 396 187 HOH HOH . E 3 HOH A 97 397 176 HOH HOH . E 3 HOH A 98 398 103 HOH HOH . E 3 HOH A 99 399 117 HOH HOH . F 3 HOH B 1 301 57 HOH HOH . F 3 HOH B 2 302 70 HOH HOH . F 3 HOH B 3 303 9 HOH HOH . F 3 HOH B 4 304 31 HOH HOH . F 3 HOH B 5 305 93 HOH HOH . F 3 HOH B 6 306 88 HOH HOH . F 3 HOH B 7 307 7 HOH HOH . F 3 HOH B 8 308 2 HOH HOH . F 3 HOH B 9 309 98 HOH HOH . F 3 HOH B 10 310 24 HOH HOH . F 3 HOH B 11 311 116 HOH HOH . F 3 HOH B 12 312 108 HOH HOH . F 3 HOH B 13 313 83 HOH HOH . F 3 HOH B 14 314 174 HOH HOH . F 3 HOH B 15 315 67 HOH HOH . F 3 HOH B 16 316 77 HOH HOH . F 3 HOH B 17 317 194 HOH HOH . F 3 HOH B 18 318 65 HOH HOH . F 3 HOH B 19 319 34 HOH HOH . F 3 HOH B 20 320 29 HOH HOH . F 3 HOH B 21 321 89 HOH HOH . F 3 HOH B 22 322 153 HOH HOH . F 3 HOH B 23 323 185 HOH HOH . F 3 HOH B 24 324 204 HOH HOH . F 3 HOH B 25 325 61 HOH HOH . F 3 HOH B 26 326 30 HOH HOH . F 3 HOH B 27 327 20 HOH HOH . F 3 HOH B 28 328 45 HOH HOH . F 3 HOH B 29 329 124 HOH HOH . F 3 HOH B 30 330 184 HOH HOH . F 3 HOH B 31 331 121 HOH HOH . F 3 HOH B 32 332 150 HOH HOH . F 3 HOH B 33 333 10 HOH HOH . F 3 HOH B 34 334 139 HOH HOH . F 3 HOH B 35 335 37 HOH HOH . F 3 HOH B 36 336 50 HOH HOH . F 3 HOH B 37 337 1 HOH HOH . F 3 HOH B 38 338 49 HOH HOH . F 3 HOH B 39 339 92 HOH HOH . F 3 HOH B 40 340 186 HOH HOH . F 3 HOH B 41 341 75 HOH HOH . F 3 HOH B 42 342 63 HOH HOH . F 3 HOH B 43 343 16 HOH HOH . F 3 HOH B 44 344 69 HOH HOH . F 3 HOH B 45 345 130 HOH HOH . F 3 HOH B 46 346 28 HOH HOH . F 3 HOH B 47 347 46 HOH HOH . F 3 HOH B 48 348 19 HOH HOH . F 3 HOH B 49 349 39 HOH HOH . F 3 HOH B 50 350 165 HOH HOH . F 3 HOH B 51 351 27 HOH HOH . F 3 HOH B 52 352 132 HOH HOH . F 3 HOH B 53 353 164 HOH HOH . F 3 HOH B 54 354 59 HOH HOH . F 3 HOH B 55 355 193 HOH HOH . F 3 HOH B 56 356 94 HOH HOH . F 3 HOH B 57 357 32 HOH HOH . F 3 HOH B 58 358 58 HOH HOH . F 3 HOH B 59 359 97 HOH HOH . F 3 HOH B 60 360 96 HOH HOH . F 3 HOH B 61 361 199 HOH HOH . F 3 HOH B 62 362 101 HOH HOH . F 3 HOH B 63 363 141 HOH HOH . F 3 HOH B 64 364 129 HOH HOH . F 3 HOH B 65 365 41 HOH HOH . F 3 HOH B 66 366 162 HOH HOH . F 3 HOH B 67 367 203 HOH HOH . F 3 HOH B 68 368 54 HOH HOH . F 3 HOH B 69 369 106 HOH HOH . F 3 HOH B 70 370 180 HOH HOH . F 3 HOH B 71 371 125 HOH HOH . F 3 HOH B 72 372 198 HOH HOH . F 3 HOH B 73 373 113 HOH HOH . F 3 HOH B 74 374 145 HOH HOH . F 3 HOH B 75 375 114 HOH HOH . F 3 HOH B 76 376 35 HOH HOH . F 3 HOH B 77 377 202 HOH HOH . F 3 HOH B 78 378 177 HOH HOH . F 3 HOH B 79 379 205 HOH HOH . F 3 HOH B 80 380 146 HOH HOH . F 3 HOH B 81 381 107 HOH HOH . F 3 HOH B 82 382 112 HOH HOH . F 3 HOH B 83 383 163 HOH HOH . F 3 HOH B 84 384 168 HOH HOH . F 3 HOH B 85 385 76 HOH HOH . F 3 HOH B 86 386 91 HOH HOH . F 3 HOH B 87 387 206 HOH HOH . F 3 HOH B 88 388 159 HOH HOH . F 3 HOH B 89 389 200 HOH HOH . F 3 HOH B 90 390 183 HOH HOH . F 3 HOH B 91 391 128 HOH HOH . F 3 HOH B 92 392 131 HOH HOH . F 3 HOH B 93 393 62 HOH HOH . F 3 HOH B 94 394 188 HOH HOH . F 3 HOH B 95 395 137 HOH HOH . F 3 HOH B 96 396 196 HOH HOH . F 3 HOH B 97 397 147 HOH HOH . F 3 HOH B 98 398 53 HOH HOH . F 3 HOH B 99 399 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 2 -5.431 30.242 52.606 1 23.1 ? C1 GOL 201 B 1 HETATM 2 O O1 GOL . . . D 2 -5.989 30.641 53.83 1 22.42 ? O1 GOL 201 B 1 HETATM 3 C C2 GOL . . . D 2 -4.959 28.769 52.72 1 26.75 ? C2 GOL 201 B 1 HETATM 4 O O2 GOL . . . D 2 -5.665 28.076 53.626 1 32.43 ? O2 GOL 201 B 1 HETATM 5 C C3 GOL . . . D 2 -5.1 28.254 51.264 1 20.25 ? C3 GOL 201 B 1 HETATM 6 O O3 GOL . . . D 2 -5.565 26.944 51.321 1 20.08 ? O3 GOL 201 B 1 HETATM 7 H H11 GOL . . . D 2 -4.673 30.792 52.352 1 27.73 ? H11 GOL 201 B 1 HETATM 8 H H12 GOL . . . D 2 -6.065 30.309 51.875 1 27.73 ? H12 GOL 201 B 1 HETATM 9 H HO1 GOL . . . D 2 -6.073 31.486 53.793 1 26.91 ? HO1 GOL 201 B 1 HETATM 10 H H2 GOL . . . D 2 -4.044 28.69 53.034 1 32.1 ? H2 GOL 201 B 1 HETATM 11 H HO2 GOL . . . D 2 -5.155 27.481 53.955 1 38.92 ? HO2 GOL 201 B 1 HETATM 12 H H31 GOL . . . D 2 -4.241 28.335 50.822 1 24.3 ? H31 GOL 201 B 1 HETATM 13 H H32 GOL . . . D 2 -5.694 28.849 50.781 1 24.3 ? H32 GOL 201 B 1 HETATM 14 H HO3 GOL . . . D 2 -4.927 26.472 51.625 1 24.09 ? HO3 GOL 201 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #