data_7DLS # _model_server_result.job_id Abxhx0fb5kzyo4k5NF3kEQ _model_server_result.datetime_utc '2024-11-27 15:43:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7DLS # _exptl.entry_id 7DLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.68 _cell.angle_gamma 90 _cell.entry_id 7DLS _cell.length_a 91.522 _cell.length_b 52.172 _cell.length_c 87.896 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 345 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 345 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.182 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 177 n n CHA C4D HEM doub 178 n n CHA HHA HEM sing 179 n n CHB C4A HEM sing 180 n n CHB C1B HEM doub 181 n n CHB HHB HEM sing 182 n n CHC C4B HEM sing 183 n n CHC C1C HEM doub 184 n n CHC HHC HEM sing 185 n n CHD C4C HEM doub 186 n n CHD C1D HEM sing 187 n n CHD HHD HEM sing 188 n n C1A C2A HEM doub 189 n y C1A NA HEM sing 190 n y C2A C3A HEM sing 191 n y C2A CAA HEM sing 192 n n C3A C4A HEM doub 193 n y C3A CMA HEM sing 194 n n C4A NA HEM sing 195 n y CMA HMA HEM sing 196 n n CMA HMAA HEM sing 197 n n CMA HMAB HEM sing 198 n n CAA CBA HEM sing 199 n n CAA HAA HEM sing 200 n n CAA HAAA HEM sing 201 n n CBA CGA HEM sing 202 n n CBA HBA HEM sing 203 n n CBA HBAA HEM sing 204 n n CGA O1A HEM doub 205 n n CGA O2A HEM sing 206 n n C1B C2B HEM sing 207 n n C1B NB HEM sing 208 n n C2B C3B HEM doub 209 n n C2B CMB HEM sing 210 n n C3B C4B HEM sing 211 n n C3B CAB HEM sing 212 n n C4B NB HEM doub 213 n n CMB HMB HEM sing 214 n n CMB HMBA HEM sing 215 n n CMB HMBB HEM sing 216 n n CAB CBB HEM doub 217 n n CAB HAB HEM sing 218 n n CBB HBB HEM sing 219 n n CBB HBBA HEM sing 220 n n C1C C2C HEM sing 221 n y C1C NC HEM sing 222 n y C2C C3C HEM doub 223 n y C2C CMC HEM sing 224 n n C3C C4C HEM sing 225 n y C3C CAC HEM sing 226 n n C4C NC HEM sing 227 n y CMC HMC HEM sing 228 n n CMC HMCA HEM sing 229 n n CMC HMCB HEM sing 230 n n CAC CBC HEM doub 231 n n CAC HAC HEM sing 232 n n CBC HBC HEM sing 233 n n CBC HBCA HEM sing 234 n n C1D C2D HEM sing 235 n n C1D ND HEM doub 236 n n C2D C3D HEM doub 237 n n C2D CMD HEM sing 238 n n C3D C4D HEM sing 239 n n C3D CAD HEM sing 240 n n C4D ND HEM sing 241 n n CMD HMD HEM sing 242 n n CMD HMDA HEM sing 243 n n CMD HMDB HEM sing 244 n n CAD CBD HEM sing 245 n n CAD HAD HEM sing 246 n n CAD HADA HEM sing 247 n n CBD CGD HEM sing 248 n n CBD HBD HEM sing 249 n n CBD HBDA HEM sing 250 n n CGD O1D HEM doub 251 n n CGD O2D HEM sing 252 n n O2A H2A HEM sing 253 n n O2D H2D HEM sing 254 n n FE NA HEM sing 255 n n FE NB HEM sing 256 n n FE NC HEM sing 257 n n FE ND HEM sing 258 n n # _atom_sites.entry_id 7DLS _atom_sites.fract_transf_matrix[1][1] 0.010926 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019167 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 401 1 HEM HEM . C 3 EV1 A 1 402 1 EV1 EV1 . D 4 HOH A 1 501 23 HOH HOH . D 4 HOH A 2 502 56 HOH HOH . D 4 HOH A 3 503 43 HOH HOH . D 4 HOH A 4 504 122 HOH HOH . D 4 HOH A 5 505 153 HOH HOH . D 4 HOH A 6 506 65 HOH HOH . D 4 HOH A 7 507 83 HOH HOH . D 4 HOH A 8 508 75 HOH HOH . D 4 HOH A 9 509 24 HOH HOH . D 4 HOH A 10 510 130 HOH HOH . D 4 HOH A 11 511 29 HOH HOH . D 4 HOH A 12 512 101 HOH HOH . D 4 HOH A 13 513 76 HOH HOH . D 4 HOH A 14 514 125 HOH HOH . D 4 HOH A 15 515 32 HOH HOH . D 4 HOH A 16 516 35 HOH HOH . D 4 HOH A 17 517 22 HOH HOH . D 4 HOH A 18 518 58 HOH HOH . D 4 HOH A 19 519 5 HOH HOH . D 4 HOH A 20 520 54 HOH HOH . D 4 HOH A 21 521 135 HOH HOH . D 4 HOH A 22 522 39 HOH HOH . D 4 HOH A 23 523 111 HOH HOH . D 4 HOH A 24 524 110 HOH HOH . D 4 HOH A 25 525 63 HOH HOH . D 4 HOH A 26 526 85 HOH HOH . D 4 HOH A 27 527 68 HOH HOH . D 4 HOH A 28 528 86 HOH HOH . D 4 HOH A 29 529 41 HOH HOH . D 4 HOH A 30 530 17 HOH HOH . D 4 HOH A 31 531 132 HOH HOH . D 4 HOH A 32 532 7 HOH HOH . D 4 HOH A 33 533 12 HOH HOH . D 4 HOH A 34 534 57 HOH HOH . D 4 HOH A 35 535 15 HOH HOH . D 4 HOH A 36 536 40 HOH HOH . D 4 HOH A 37 537 126 HOH HOH . D 4 HOH A 38 538 80 HOH HOH . D 4 HOH A 39 539 11 HOH HOH . D 4 HOH A 40 540 84 HOH HOH . D 4 HOH A 41 541 26 HOH HOH . D 4 HOH A 42 542 20 HOH HOH . D 4 HOH A 43 543 44 HOH HOH . D 4 HOH A 44 544 52 HOH HOH . D 4 HOH A 45 545 109 HOH HOH . D 4 HOH A 46 546 30 HOH HOH . D 4 HOH A 47 547 16 HOH HOH . D 4 HOH A 48 548 82 HOH HOH . D 4 HOH A 49 549 3 HOH HOH . D 4 HOH A 50 550 47 HOH HOH . D 4 HOH A 51 551 19 HOH HOH . D 4 HOH A 52 552 64 HOH HOH . D 4 HOH A 53 553 28 HOH HOH . D 4 HOH A 54 554 148 HOH HOH . D 4 HOH A 55 555 37 HOH HOH . D 4 HOH A 56 556 48 HOH HOH . D 4 HOH A 57 557 59 HOH HOH . D 4 HOH A 58 558 49 HOH HOH . D 4 HOH A 59 559 136 HOH HOH . D 4 HOH A 60 560 69 HOH HOH . D 4 HOH A 61 561 96 HOH HOH . D 4 HOH A 62 562 42 HOH HOH . D 4 HOH A 63 563 73 HOH HOH . D 4 HOH A 64 564 138 HOH HOH . D 4 HOH A 65 565 70 HOH HOH . D 4 HOH A 66 566 53 HOH HOH . D 4 HOH A 67 567 33 HOH HOH . D 4 HOH A 68 568 2 HOH HOH . D 4 HOH A 69 569 10 HOH HOH . D 4 HOH A 70 570 51 HOH HOH . D 4 HOH A 71 571 21 HOH HOH . D 4 HOH A 72 572 127 HOH HOH . D 4 HOH A 73 573 18 HOH HOH . D 4 HOH A 74 574 34 HOH HOH . D 4 HOH A 75 575 91 HOH HOH . D 4 HOH A 76 576 128 HOH HOH . D 4 HOH A 77 577 79 HOH HOH . D 4 HOH A 78 578 27 HOH HOH . D 4 HOH A 79 579 150 HOH HOH . D 4 HOH A 80 580 151 HOH HOH . D 4 HOH A 81 581 13 HOH HOH . D 4 HOH A 82 582 134 HOH HOH . D 4 HOH A 83 583 106 HOH HOH . D 4 HOH A 84 584 133 HOH HOH . D 4 HOH A 85 585 36 HOH HOH . D 4 HOH A 86 586 25 HOH HOH . D 4 HOH A 87 587 1 HOH HOH . D 4 HOH A 88 588 142 HOH HOH . D 4 HOH A 89 589 9 HOH HOH . D 4 HOH A 90 590 67 HOH HOH . D 4 HOH A 91 591 46 HOH HOH . D 4 HOH A 92 592 141 HOH HOH . D 4 HOH A 93 593 92 HOH HOH . D 4 HOH A 94 594 45 HOH HOH . D 4 HOH A 95 595 66 HOH HOH . D 4 HOH A 96 596 14 HOH HOH . D 4 HOH A 97 597 149 HOH HOH . D 4 HOH A 98 598 8 HOH HOH . D 4 HOH A 99 599 4 HOH HOH . D 4 HOH A 100 600 154 HOH HOH . D 4 HOH A 101 601 145 HOH HOH . D 4 HOH A 102 602 97 HOH HOH . D 4 HOH A 103 603 60 HOH HOH . D 4 HOH A 104 604 72 HOH HOH . D 4 HOH A 105 605 112 HOH HOH . D 4 HOH A 106 606 6 HOH HOH . D 4 HOH A 107 607 116 HOH HOH . D 4 HOH A 108 608 81 HOH HOH . D 4 HOH A 109 609 100 HOH HOH . D 4 HOH A 110 610 93 HOH HOH . D 4 HOH A 111 611 31 HOH HOH . D 4 HOH A 112 612 103 HOH HOH . D 4 HOH A 113 613 71 HOH HOH . D 4 HOH A 114 614 105 HOH HOH . D 4 HOH A 115 615 155 HOH HOH . D 4 HOH A 116 616 104 HOH HOH . D 4 HOH A 117 617 137 HOH HOH . D 4 HOH A 118 618 108 HOH HOH . D 4 HOH A 119 619 118 HOH HOH . D 4 HOH A 120 620 55 HOH HOH . D 4 HOH A 121 621 139 HOH HOH . D 4 HOH A 122 622 114 HOH HOH . D 4 HOH A 123 623 143 HOH HOH . D 4 HOH A 124 624 87 HOH HOH . D 4 HOH A 125 625 152 HOH HOH . D 4 HOH A 126 626 117 HOH HOH . D 4 HOH A 127 627 115 HOH HOH . D 4 HOH A 128 628 124 HOH HOH . D 4 HOH A 129 629 119 HOH HOH . D 4 HOH A 130 630 99 HOH HOH . D 4 HOH A 131 631 131 HOH HOH . D 4 HOH A 132 632 147 HOH HOH . D 4 HOH A 133 633 113 HOH HOH . D 4 HOH A 134 634 144 HOH HOH . D 4 HOH A 135 635 95 HOH HOH . D 4 HOH A 136 636 50 HOH HOH . D 4 HOH A 137 637 123 HOH HOH . D 4 HOH A 138 638 140 HOH HOH . D 4 HOH A 139 639 146 HOH HOH . D 4 HOH A 140 640 78 HOH HOH . D 4 HOH A 141 641 88 HOH HOH . D 4 HOH A 142 642 89 HOH HOH . D 4 HOH A 143 643 107 HOH HOH . D 4 HOH A 144 644 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 15.551 -4.897 14.175 1 20.01 ? CHA HEM 401 A 1 HETATM 2 C CHB HEM . . . B 2 17.764 -3.458 18.263 1 19.8 ? CHB HEM 401 A 1 HETATM 3 C CHC HEM . . . B 2 19.366 0.342 15.839 1 20.25 ? CHC HEM 401 A 1 HETATM 4 C CHD HEM . . . B 2 16.734 -0.764 11.979 1 22.76 ? CHD HEM 401 A 1 HETATM 5 C C1A HEM . . . B 2 16.046 -4.842 15.47 1 21.69 ? C1A HEM 401 A 1 HETATM 6 C C2A HEM . . . B 2 15.94 -5.914 16.417 1 20.66 ? C2A HEM 401 A 1 HETATM 7 C C3A HEM . . . B 2 16.549 -5.486 17.541 1 19.59 ? C3A HEM 401 A 1 HETATM 8 C C4A HEM . . . B 2 17.026 -4.171 17.334 1 20.62 ? C4A HEM 401 A 1 HETATM 9 C CMA HEM . . . B 2 16.675 -6.263 18.82 1 19.06 ? CMA HEM 401 A 1 HETATM 10 C CAA HEM . . . B 2 15.252 -7.272 16.3 1 20.78 ? CAA HEM 401 A 1 HETATM 11 C CBA HEM . . . B 2 13.782 -7.184 16.788 1 22.33 ? CBA HEM 401 A 1 HETATM 12 C CGA HEM . . . B 2 13.094 -8.562 16.813 1 23.2 ? CGA HEM 401 A 1 HETATM 13 O O1A HEM . . . B 2 13.734 -9.559 16.428 1 21.56 ? O1A HEM 401 A 1 HETATM 14 O O2A HEM . . . B 2 11.881 -8.683 17.208 1 21.53 ? O2A HEM 401 A 1 HETATM 15 C C1B HEM . . . B 2 18.426 -2.271 17.936 1 19.86 ? C1B HEM 401 A 1 HETATM 16 C C2B HEM . . . B 2 19.256 -1.535 18.842 1 19.25 ? C2B HEM 401 A 1 HETATM 17 C C3B HEM . . . B 2 19.695 -0.435 18.144 1 21.21 ? C3B HEM 401 A 1 HETATM 18 C C4B HEM . . . B 2 19.14 -0.571 16.804 1 20.15 ? C4B HEM 401 A 1 HETATM 19 C CMB HEM . . . B 2 19.549 -1.905 20.265 1 17.23 ? CMB HEM 401 A 1 HETATM 20 C CAB HEM . . . B 2 20.625 0.673 18.472 1 21.29 ? CAB HEM 401 A 1 HETATM 21 C CBB HEM . . . B 2 21.361 0.672 19.538 1 22.53 ? CBB HEM 401 A 1 HETATM 22 C C1C HEM . . . B 2 18.822 0.4 14.58 1 22.89 ? C1C HEM 401 A 1 HETATM 23 C C2C HEM . . . B 2 19.157 1.327 13.594 1 22.86 ? C2C HEM 401 A 1 HETATM 24 C C3C HEM . . . B 2 18.406 1.04 12.483 1 23.9 ? C3C HEM 401 A 1 HETATM 25 C C4C HEM . . . B 2 17.598 -0.082 12.798 1 23.35 ? C4C HEM 401 A 1 HETATM 26 C CMC HEM . . . B 2 20.161 2.47 13.668 1 21.76 ? CMC HEM 401 A 1 HETATM 27 C CAC HEM . . . B 2 18.619 1.905 11.308 1 26.1 ? CAC HEM 401 A 1 HETATM 28 C CBC HEM . . . B 2 17.993 1.782 10.215 1 32.17 ? CBC HEM 401 A 1 HETATM 29 C C1D HEM . . . B 2 16.231 -2.013 12.289 1 22.39 ? C1D HEM 401 A 1 HETATM 30 C C2D HEM . . . B 2 15.364 -2.72 11.34 1 21.63 ? C2D HEM 401 A 1 HETATM 31 C C3D HEM . . . B 2 15.038 -3.877 11.931 1 22.34 ? C3D HEM 401 A 1 HETATM 32 C C4D HEM . . . B 2 15.709 -3.876 13.27 1 21.56 ? C4D HEM 401 A 1 HETATM 33 C CMD HEM . . . B 2 14.919 -2.245 9.973 1 22.58 ? CMD HEM 401 A 1 HETATM 34 C CAD HEM . . . B 2 14.169 -4.963 11.333 1 21.6 ? CAD HEM 401 A 1 HETATM 35 C CBD HEM . . . B 2 15.049 -5.918 10.514 1 22.79 ? CBD HEM 401 A 1 HETATM 36 C CGD HEM . . . B 2 14.278 -7.08 9.87 1 25.76 ? CGD HEM 401 A 1 HETATM 37 O O1D HEM . . . B 2 14.886 -7.937 9.142 1 25.01 ? O1D HEM 401 A 1 HETATM 38 O O2D HEM . . . B 2 13.054 -7.236 10.103 1 23.99 ? O2D HEM 401 A 1 HETATM 39 N NA HEM . . . B 2 16.773 -3.803 16.046 1 20.01 ? NA HEM 401 A 1 HETATM 40 N NB HEM . . . B 2 18.389 -1.655 16.762 1 21.61 ? NB HEM 401 A 1 HETATM 41 N NC HEM . . . B 2 17.904 -0.45 14.087 1 23.9 ? NC HEM 401 A 1 HETATM 42 N ND HEM . . . B 2 16.413 -2.728 13.438 1 23.41 ? ND HEM 401 A 1 HETATM 43 FE FE HEM . . . B 2 17.429 -2.258 14.992 1 20.89 ? FE HEM 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #