data_7DMN # _model_server_result.job_id T8G-3XP3FoxpcITMoM6pQw _model_server_result.datetime_utc '2024-11-15 14:22:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dmn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7DMN # _exptl.entry_id 7DMN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DMN _cell.length_a 84.968 _cell.length_b 82.429 _cell.length_c 48.192 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DMN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7DMN _atom_sites.fract_transf_matrix[1][1] 0.011769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 2 GOL A 1 402 2 GOL GOL . D 3 HOH A 1 501 228 HOH HOH . D 3 HOH A 2 502 106 HOH HOH . D 3 HOH A 3 503 145 HOH HOH . D 3 HOH A 4 504 197 HOH HOH . D 3 HOH A 5 505 158 HOH HOH . D 3 HOH A 6 506 325 HOH HOH . D 3 HOH A 7 507 252 HOH HOH . D 3 HOH A 8 508 249 HOH HOH . D 3 HOH A 9 509 69 HOH HOH . D 3 HOH A 10 510 77 HOH HOH . D 3 HOH A 11 511 130 HOH HOH . D 3 HOH A 12 512 164 HOH HOH . D 3 HOH A 13 513 57 HOH HOH . D 3 HOH A 14 514 43 HOH HOH . D 3 HOH A 15 515 65 HOH HOH . D 3 HOH A 16 516 120 HOH HOH . D 3 HOH A 17 517 241 HOH HOH . D 3 HOH A 18 518 295 HOH HOH . D 3 HOH A 19 519 141 HOH HOH . D 3 HOH A 20 520 189 HOH HOH . D 3 HOH A 21 521 251 HOH HOH . D 3 HOH A 22 522 220 HOH HOH . D 3 HOH A 23 523 171 HOH HOH . D 3 HOH A 24 524 214 HOH HOH . D 3 HOH A 25 525 190 HOH HOH . D 3 HOH A 26 526 15 HOH HOH . D 3 HOH A 27 527 38 HOH HOH . D 3 HOH A 28 528 91 HOH HOH . D 3 HOH A 29 529 144 HOH HOH . D 3 HOH A 30 530 33 HOH HOH . D 3 HOH A 31 531 39 HOH HOH . D 3 HOH A 32 532 31 HOH HOH . D 3 HOH A 33 533 58 HOH HOH . D 3 HOH A 34 534 107 HOH HOH . D 3 HOH A 35 535 48 HOH HOH . D 3 HOH A 36 536 113 HOH HOH . D 3 HOH A 37 537 127 HOH HOH . D 3 HOH A 38 538 196 HOH HOH . D 3 HOH A 39 539 129 HOH HOH . D 3 HOH A 40 540 3 HOH HOH . D 3 HOH A 41 541 221 HOH HOH . D 3 HOH A 42 542 217 HOH HOH . D 3 HOH A 43 543 152 HOH HOH . D 3 HOH A 44 544 82 HOH HOH . D 3 HOH A 45 545 81 HOH HOH . D 3 HOH A 46 546 208 HOH HOH . D 3 HOH A 47 547 253 HOH HOH . D 3 HOH A 48 548 59 HOH HOH . D 3 HOH A 49 549 111 HOH HOH . D 3 HOH A 50 550 51 HOH HOH . D 3 HOH A 51 551 234 HOH HOH . D 3 HOH A 52 552 10 HOH HOH . D 3 HOH A 53 553 131 HOH HOH . D 3 HOH A 54 554 109 HOH HOH . D 3 HOH A 55 555 135 HOH HOH . D 3 HOH A 56 556 266 HOH HOH . D 3 HOH A 57 557 112 HOH HOH . D 3 HOH A 58 558 52 HOH HOH . D 3 HOH A 59 559 309 HOH HOH . D 3 HOH A 60 560 110 HOH HOH . D 3 HOH A 61 561 136 HOH HOH . D 3 HOH A 62 562 18 HOH HOH . D 3 HOH A 63 563 232 HOH HOH . D 3 HOH A 64 564 123 HOH HOH . D 3 HOH A 65 565 50 HOH HOH . D 3 HOH A 66 566 71 HOH HOH . D 3 HOH A 67 567 149 HOH HOH . D 3 HOH A 68 568 119 HOH HOH . D 3 HOH A 69 569 80 HOH HOH . D 3 HOH A 70 570 26 HOH HOH . D 3 HOH A 71 571 24 HOH HOH . D 3 HOH A 72 572 179 HOH HOH . D 3 HOH A 73 573 209 HOH HOH . D 3 HOH A 74 574 4 HOH HOH . D 3 HOH A 75 575 27 HOH HOH . D 3 HOH A 76 576 324 HOH HOH . D 3 HOH A 77 577 5 HOH HOH . D 3 HOH A 78 578 98 HOH HOH . D 3 HOH A 79 579 236 HOH HOH . D 3 HOH A 80 580 274 HOH HOH . D 3 HOH A 81 581 55 HOH HOH . D 3 HOH A 82 582 46 HOH HOH . D 3 HOH A 83 583 11 HOH HOH . D 3 HOH A 84 584 84 HOH HOH . D 3 HOH A 85 585 78 HOH HOH . D 3 HOH A 86 586 37 HOH HOH . D 3 HOH A 87 587 185 HOH HOH . D 3 HOH A 88 588 54 HOH HOH . D 3 HOH A 89 589 126 HOH HOH . D 3 HOH A 90 590 66 HOH HOH . D 3 HOH A 91 591 25 HOH HOH . D 3 HOH A 92 592 104 HOH HOH . D 3 HOH A 93 593 34 HOH HOH . D 3 HOH A 94 594 175 HOH HOH . D 3 HOH A 95 595 62 HOH HOH . D 3 HOH A 96 596 16 HOH HOH . D 3 HOH A 97 597 182 HOH HOH . D 3 HOH A 98 598 223 HOH HOH . D 3 HOH A 99 599 12 HOH HOH . D 3 HOH A 100 600 301 HOH HOH . D 3 HOH A 101 601 210 HOH HOH . D 3 HOH A 102 602 262 HOH HOH . D 3 HOH A 103 603 21 HOH HOH . D 3 HOH A 104 604 20 HOH HOH . D 3 HOH A 105 605 269 HOH HOH . D 3 HOH A 106 606 29 HOH HOH . D 3 HOH A 107 607 100 HOH HOH . D 3 HOH A 108 608 114 HOH HOH . D 3 HOH A 109 609 227 HOH HOH . D 3 HOH A 110 610 22 HOH HOH . D 3 HOH A 111 611 194 HOH HOH . D 3 HOH A 112 612 2 HOH HOH . D 3 HOH A 113 613 45 HOH HOH . D 3 HOH A 114 614 53 HOH HOH . D 3 HOH A 115 615 231 HOH HOH . D 3 HOH A 116 616 72 HOH HOH . D 3 HOH A 117 617 306 HOH HOH . D 3 HOH A 118 618 68 HOH HOH . D 3 HOH A 119 619 83 HOH HOH . D 3 HOH A 120 620 44 HOH HOH . D 3 HOH A 121 621 319 HOH HOH . D 3 HOH A 122 622 88 HOH HOH . D 3 HOH A 123 623 151 HOH HOH . D 3 HOH A 124 624 174 HOH HOH . D 3 HOH A 125 625 313 HOH HOH . D 3 HOH A 126 626 298 HOH HOH . D 3 HOH A 127 627 128 HOH HOH . D 3 HOH A 128 628 49 HOH HOH . D 3 HOH A 129 629 74 HOH HOH . D 3 HOH A 130 630 70 HOH HOH . D 3 HOH A 131 631 60 HOH HOH . D 3 HOH A 132 632 94 HOH HOH . D 3 HOH A 133 633 140 HOH HOH . D 3 HOH A 134 634 86 HOH HOH . D 3 HOH A 135 635 303 HOH HOH . D 3 HOH A 136 636 213 HOH HOH . D 3 HOH A 137 637 176 HOH HOH . D 3 HOH A 138 638 177 HOH HOH . D 3 HOH A 139 639 108 HOH HOH . D 3 HOH A 140 640 255 HOH HOH . D 3 HOH A 141 641 67 HOH HOH . D 3 HOH A 142 642 256 HOH HOH . D 3 HOH A 143 643 259 HOH HOH . D 3 HOH A 144 644 317 HOH HOH . D 3 HOH A 145 645 224 HOH HOH . D 3 HOH A 146 646 206 HOH HOH . D 3 HOH A 147 647 169 HOH HOH . D 3 HOH A 148 648 17 HOH HOH . D 3 HOH A 149 649 219 HOH HOH . D 3 HOH A 150 650 143 HOH HOH . D 3 HOH A 151 651 28 HOH HOH . D 3 HOH A 152 652 138 HOH HOH . D 3 HOH A 153 653 121 HOH HOH . D 3 HOH A 154 654 8 HOH HOH . D 3 HOH A 155 655 159 HOH HOH . D 3 HOH A 156 656 56 HOH HOH . D 3 HOH A 157 657 7 HOH HOH . D 3 HOH A 158 658 89 HOH HOH . D 3 HOH A 159 659 61 HOH HOH . D 3 HOH A 160 660 41 HOH HOH . D 3 HOH A 161 661 36 HOH HOH . D 3 HOH A 162 662 76 HOH HOH . D 3 HOH A 163 663 32 HOH HOH . D 3 HOH A 164 664 146 HOH HOH . D 3 HOH A 165 665 117 HOH HOH . D 3 HOH A 166 666 201 HOH HOH . D 3 HOH A 167 667 162 HOH HOH . D 3 HOH A 168 668 19 HOH HOH . D 3 HOH A 169 669 73 HOH HOH . D 3 HOH A 170 670 103 HOH HOH . D 3 HOH A 171 671 193 HOH HOH . D 3 HOH A 172 672 118 HOH HOH . D 3 HOH A 173 673 147 HOH HOH . D 3 HOH A 174 674 170 HOH HOH . D 3 HOH A 175 675 30 HOH HOH . D 3 HOH A 176 676 172 HOH HOH . D 3 HOH A 177 677 237 HOH HOH . D 3 HOH A 178 678 97 HOH HOH . D 3 HOH A 179 679 246 HOH HOH . D 3 HOH A 180 680 23 HOH HOH . D 3 HOH A 181 681 183 HOH HOH . D 3 HOH A 182 682 116 HOH HOH . D 3 HOH A 183 683 243 HOH HOH . D 3 HOH A 184 684 156 HOH HOH . D 3 HOH A 185 685 184 HOH HOH . D 3 HOH A 186 686 153 HOH HOH . D 3 HOH A 187 687 284 HOH HOH . D 3 HOH A 188 688 102 HOH HOH . D 3 HOH A 189 689 239 HOH HOH . D 3 HOH A 190 690 35 HOH HOH . D 3 HOH A 191 691 87 HOH HOH . D 3 HOH A 192 692 9 HOH HOH . D 3 HOH A 193 693 134 HOH HOH . D 3 HOH A 194 694 93 HOH HOH . D 3 HOH A 195 695 264 HOH HOH . D 3 HOH A 196 696 178 HOH HOH . D 3 HOH A 197 697 139 HOH HOH . D 3 HOH A 198 698 192 HOH HOH . D 3 HOH A 199 699 278 HOH HOH . D 3 HOH A 200 700 42 HOH HOH . D 3 HOH A 201 701 85 HOH HOH . D 3 HOH A 202 702 155 HOH HOH . D 3 HOH A 203 703 40 HOH HOH . D 3 HOH A 204 704 211 HOH HOH . D 3 HOH A 205 705 133 HOH HOH . D 3 HOH A 206 706 1 HOH HOH . D 3 HOH A 207 707 276 HOH HOH . D 3 HOH A 208 708 6 HOH HOH . D 3 HOH A 209 709 173 HOH HOH . D 3 HOH A 210 710 318 HOH HOH . D 3 HOH A 211 711 63 HOH HOH . D 3 HOH A 212 712 64 HOH HOH . D 3 HOH A 213 713 47 HOH HOH . D 3 HOH A 214 714 181 HOH HOH . D 3 HOH A 215 715 235 HOH HOH . D 3 HOH A 216 716 105 HOH HOH . D 3 HOH A 217 717 314 HOH HOH . D 3 HOH A 218 718 132 HOH HOH . D 3 HOH A 219 719 124 HOH HOH . D 3 HOH A 220 720 225 HOH HOH . D 3 HOH A 221 721 248 HOH HOH . D 3 HOH A 222 722 167 HOH HOH . D 3 HOH A 223 723 125 HOH HOH . D 3 HOH A 224 724 216 HOH HOH . D 3 HOH A 225 725 270 HOH HOH . D 3 HOH A 226 726 263 HOH HOH . D 3 HOH A 227 727 204 HOH HOH . D 3 HOH A 228 728 148 HOH HOH . D 3 HOH A 229 729 199 HOH HOH . D 3 HOH A 230 730 198 HOH HOH . D 3 HOH A 231 731 291 HOH HOH . D 3 HOH A 232 732 160 HOH HOH . D 3 HOH A 233 733 258 HOH HOH . D 3 HOH A 234 734 115 HOH HOH . D 3 HOH A 235 735 290 HOH HOH . D 3 HOH A 236 736 307 HOH HOH . D 3 HOH A 237 737 247 HOH HOH . D 3 HOH A 238 738 261 HOH HOH . D 3 HOH A 239 739 13 HOH HOH . D 3 HOH A 240 740 277 HOH HOH . D 3 HOH A 241 741 226 HOH HOH . D 3 HOH A 242 742 271 HOH HOH . D 3 HOH A 243 743 305 HOH HOH . D 3 HOH A 244 744 273 HOH HOH . D 3 HOH A 245 745 316 HOH HOH . D 3 HOH A 246 746 315 HOH HOH . D 3 HOH A 247 747 202 HOH HOH . D 3 HOH A 248 748 200 HOH HOH . D 3 HOH A 249 749 75 HOH HOH . D 3 HOH A 250 750 90 HOH HOH . D 3 HOH A 251 751 203 HOH HOH . D 3 HOH A 252 752 250 HOH HOH . D 3 HOH A 253 753 222 HOH HOH . D 3 HOH A 254 754 207 HOH HOH . D 3 HOH A 255 755 267 HOH HOH . D 3 HOH A 256 756 320 HOH HOH . D 3 HOH A 257 757 205 HOH HOH . D 3 HOH A 258 758 137 HOH HOH . D 3 HOH A 259 759 142 HOH HOH . D 3 HOH A 260 760 272 HOH HOH . D 3 HOH A 261 761 289 HOH HOH . D 3 HOH A 262 762 321 HOH HOH . D 3 HOH A 263 763 260 HOH HOH . D 3 HOH A 264 764 323 HOH HOH . D 3 HOH A 265 765 163 HOH HOH . D 3 HOH A 266 766 122 HOH HOH . D 3 HOH A 267 767 165 HOH HOH . D 3 HOH A 268 768 230 HOH HOH . D 3 HOH A 269 769 99 HOH HOH . D 3 HOH A 270 770 304 HOH HOH . D 3 HOH A 271 771 233 HOH HOH . D 3 HOH A 272 772 154 HOH HOH . D 3 HOH A 273 773 180 HOH HOH . D 3 HOH A 274 774 327 HOH HOH . D 3 HOH A 275 775 166 HOH HOH . D 3 HOH A 276 776 218 HOH HOH . D 3 HOH A 277 777 191 HOH HOH . D 3 HOH A 278 778 311 HOH HOH . D 3 HOH A 279 779 168 HOH HOH . D 3 HOH A 280 780 79 HOH HOH . D 3 HOH A 281 781 242 HOH HOH . D 3 HOH A 282 782 268 HOH HOH . D 3 HOH A 283 783 254 HOH HOH . D 3 HOH A 284 784 238 HOH HOH . D 3 HOH A 285 785 195 HOH HOH . D 3 HOH A 286 786 150 HOH HOH . D 3 HOH A 287 787 187 HOH HOH . D 3 HOH A 288 788 245 HOH HOH . D 3 HOH A 289 789 240 HOH HOH . D 3 HOH A 290 790 215 HOH HOH . D 3 HOH A 291 791 186 HOH HOH . D 3 HOH A 292 792 283 HOH HOH . D 3 HOH A 293 793 282 HOH HOH . D 3 HOH A 294 794 212 HOH HOH . D 3 HOH A 295 795 326 HOH HOH . D 3 HOH A 296 796 287 HOH HOH . D 3 HOH A 297 797 292 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -19.236 20.472 -6.897 1 54.01 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 -18.946 21.25 -8.068 1 50.97 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 -20.445 19.508 -7.016 1 52.14 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 -19.937 18.167 -6.892 1 52.87 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 -21.525 19.768 -5.937 1 47.88 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 -22.377 18.615 -5.726 1 46.6 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #