data_7DMZ # _model_server_result.job_id 14l1g-NID4BYZ5mgyXNMnw _model_server_result.datetime_utc '2024-11-26 05:39:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":501}' # _entry.id 7DMZ # _exptl.entry_id 7DMZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DMZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O2G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 H O3G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 H O1B GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 J O2G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 J O3G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc6 J O3B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 J O1B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 181 n n PG O2G GTP sing 182 n n PG O3G GTP sing 183 n n PG O3B GTP sing 184 n n O2G HOG2 GTP sing 185 n n O3G HOG3 GTP sing 186 n n O3B PB GTP sing 187 n n PB O1B GTP doub 188 n n PB O2B GTP sing 189 n n PB O3A GTP sing 190 n n O2B HOB2 GTP sing 191 n n O3A PA GTP sing 192 n n PA O1A GTP doub 193 n n PA O2A GTP sing 194 n n PA O5' GTP sing 195 n n O2A HOA2 GTP sing 196 n n O5' C5' GTP sing 197 n n C5' C4' GTP sing 198 n n C5' H5' GTP sing 199 n n C5' "H5''" GTP sing 200 n n C4' O4' GTP sing 201 n n C4' C3' GTP sing 202 n n C4' H4' GTP sing 203 n n O4' C1' GTP sing 204 n n C3' O3' GTP sing 205 n n C3' C2' GTP sing 206 n n C3' H3' GTP sing 207 n n O3' HO3' GTP sing 208 n n C2' O2' GTP sing 209 n n C2' C1' GTP sing 210 n n C2' H2' GTP sing 211 n n O2' HO2' GTP sing 212 n n C1' N9 GTP sing 213 n n C1' H1' GTP sing 214 n n N9 C8 GTP sing 215 n y N9 C4 GTP sing 216 n y C8 N7 GTP doub 217 n y C8 H8 GTP sing 218 n n N7 C5 GTP sing 219 n y C5 C6 GTP sing 220 n n C5 C4 GTP doub 221 n y C6 O6 GTP doub 222 n n C6 N1 GTP sing 223 n n N1 C2 GTP sing 224 n n N1 HN1 GTP sing 225 n n C2 N2 GTP sing 226 n n C2 N3 GTP doub 227 n n N2 HN21 GTP sing 228 n n N2 HN22 GTP sing 229 n n N3 C4 GTP sing 230 n n # _atom_sites.entry_id 7DMZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP D 1 501 501 GTP GTP . H 3 GTP A 1 501 501 GTP GTP . I 4 MG A 1 502 502 MG MG . J 3 GTP B 1 501 501 GTP GTP . K 4 MG B 1 502 502 MG MG . L 5 TAJ E 1 501 501 TAJ TAJ . M 6 G2P E 1 502 501 G2P G2P . N 5 TAJ C 1 501 501 TAJ TAJ . O 6 G2P C 1 502 501 G2P G2P . P 5 TAJ F 1 501 501 TAJ TAJ . Q 6 G2P F 1 502 501 G2P G2P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 3 136.881 109.095 133.101 1 58.98 ? PG GTP 501 D 1 HETATM 2 O O1G GTP . . . G 3 137.695 109.828 134.145 1 58.98 ? O1G GTP 501 D 1 HETATM 3 O O2G GTP . . . G 3 137.765 108.698 131.943 1 58.98 ? O2G GTP 501 D 1 HETATM 4 O O3G GTP . . . G 3 136.239 107.867 133.707 1 58.98 ? O3G GTP 501 D 1 HETATM 5 O O3B GTP . . . G 3 135.673 110.06 132.53 1 58.98 ? O3B GTP 501 D 1 HETATM 6 P PB GTP . . . G 3 134.307 109.36 131.936 1 58.98 ? PB GTP 501 D 1 HETATM 7 O O1B GTP . . . G 3 133.367 109.056 133.083 1 58.98 ? O1B GTP 501 D 1 HETATM 8 O O2B GTP . . . G 3 134.688 108.082 131.241 1 58.98 ? O2B GTP 501 D 1 HETATM 9 O O3A GTP . . . G 3 133.581 110.364 130.85 1 58.98 ? O3A GTP 501 D 1 HETATM 10 P PA GTP . . . G 3 132.101 110.003 130.199 1 58.98 ? PA GTP 501 D 1 HETATM 11 O O1A GTP . . . G 3 131.574 108.724 130.833 1 58.98 ? O1A GTP 501 D 1 HETATM 12 O O2A GTP . . . G 3 132.224 109.8 128.714 1 58.98 ? O2A GTP 501 D 1 HETATM 13 O O5' GTP . . . G 3 131.03 111.208 130.49 1 58.98 ? O5' GTP 501 D 1 HETATM 14 C C5' GTP . . . G 3 129.748 110.867 130.845 1 58.98 ? C5' GTP 501 D 1 HETATM 15 C C4' GTP . . . G 3 128.903 110.67 129.547 1 58.98 ? C4' GTP 501 D 1 HETATM 16 O O4' GTP . . . G 3 129.157 109.488 129.068 1 58.98 ? O4' GTP 501 D 1 HETATM 17 C C3' GTP . . . G 3 127.42 110.656 129.895 1 58.98 ? C3' GTP 501 D 1 HETATM 18 O O3' GTP . . . G 3 126.802 111.764 129.399 1 58.98 ? O3' GTP 501 D 1 HETATM 19 C C2' GTP . . . G 3 126.848 109.4 129.193 1 58.98 ? C2' GTP 501 D 1 HETATM 20 O O2' GTP . . . G 3 125.668 109.826 128.393 1 58.98 ? O2' GTP 501 D 1 HETATM 21 C C1' GTP . . . G 3 127.782 108.989 128.406 1 58.98 ? C1' GTP 501 D 1 HETATM 22 N N9 GTP . . . G 3 127.815 107.529 128.303 1 58.98 ? N9 GTP 501 D 1 HETATM 23 C C8 GTP . . . G 3 128.044 106.728 129.379 1 58.98 ? C8 GTP 501 D 1 HETATM 24 N N7 GTP . . . G 3 128.018 105.436 128.956 1 58.98 ? N7 GTP 501 D 1 HETATM 25 C C5 GTP . . . G 3 127.783 105.434 127.649 1 58.98 ? C5 GTP 501 D 1 HETATM 26 C C6 GTP . . . G 3 127.64 104.291 126.623 1 58.98 ? C6 GTP 501 D 1 HETATM 27 O O6 GTP . . . G 3 127.747 103.162 126.973 1 58.98 ? O6 GTP 501 D 1 HETATM 28 N N1 GTP . . . G 3 127.377 104.59 125.237 1 58.98 ? N1 GTP 501 D 1 HETATM 29 C C2 GTP . . . G 3 127.251 105.969 124.824 1 58.98 ? C2 GTP 501 D 1 HETATM 30 N N2 GTP . . . G 3 126.987 106.297 123.436 1 58.98 ? N2 GTP 501 D 1 HETATM 31 N N3 GTP . . . G 3 127.389 107.063 125.816 1 58.98 ? N3 GTP 501 D 1 HETATM 32 C C4 GTP . . . G 3 127.661 106.746 127.242 1 58.98 ? C4 GTP 501 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #