data_7DMZ # _model_server_result.job_id kQkf9XR1yREtvQSrKZ1i-Q _model_server_result.datetime_utc '2024-11-26 05:42:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 7DMZ # _exptl.entry_id 7DMZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DMZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O2G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 H O3G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 H O1B GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 J O2G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 J O3G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc6 J O3B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 J O1B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 181 n n PG O2G GTP sing 182 n n PG O3G GTP sing 183 n n PG O3B GTP sing 184 n n O2G HOG2 GTP sing 185 n n O3G HOG3 GTP sing 186 n n O3B PB GTP sing 187 n n PB O1B GTP doub 188 n n PB O2B GTP sing 189 n n PB O3A GTP sing 190 n n O2B HOB2 GTP sing 191 n n O3A PA GTP sing 192 n n PA O1A GTP doub 193 n n PA O2A GTP sing 194 n n PA O5' GTP sing 195 n n O2A HOA2 GTP sing 196 n n O5' C5' GTP sing 197 n n C5' C4' GTP sing 198 n n C5' H5' GTP sing 199 n n C5' "H5''" GTP sing 200 n n C4' O4' GTP sing 201 n n C4' C3' GTP sing 202 n n C4' H4' GTP sing 203 n n O4' C1' GTP sing 204 n n C3' O3' GTP sing 205 n n C3' C2' GTP sing 206 n n C3' H3' GTP sing 207 n n O3' HO3' GTP sing 208 n n C2' O2' GTP sing 209 n n C2' C1' GTP sing 210 n n C2' H2' GTP sing 211 n n O2' HO2' GTP sing 212 n n C1' N9 GTP sing 213 n n C1' H1' GTP sing 214 n n N9 C8 GTP sing 215 n y N9 C4 GTP sing 216 n y C8 N7 GTP doub 217 n y C8 H8 GTP sing 218 n n N7 C5 GTP sing 219 n y C5 C6 GTP sing 220 n n C5 C4 GTP doub 221 n y C6 O6 GTP doub 222 n n C6 N1 GTP sing 223 n n N1 C2 GTP sing 224 n n N1 HN1 GTP sing 225 n n C2 N2 GTP sing 226 n n C2 N3 GTP doub 227 n n N2 HN21 GTP sing 228 n n N2 HN22 GTP sing 229 n n N3 C4 GTP sing 230 n n # _atom_sites.entry_id 7DMZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP D 1 501 501 GTP GTP . H 3 GTP A 1 501 501 GTP GTP . I 4 MG A 1 502 502 MG MG . J 3 GTP B 1 501 501 GTP GTP . K 4 MG B 1 502 502 MG MG . L 5 TAJ E 1 501 501 TAJ TAJ . M 6 G2P E 1 502 501 G2P G2P . N 5 TAJ C 1 501 501 TAJ TAJ . O 6 G2P C 1 502 501 G2P G2P . P 5 TAJ F 1 501 501 TAJ TAJ . Q 6 G2P F 1 502 501 G2P G2P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . H 3 80.891 100.615 166.377 1 83.87 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . H 3 81.03 101.885 167.192 1 83.87 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . H 3 82.265 100.095 166.02 1 83.87 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . H 3 80.15 99.564 167.173 1 83.87 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . H 3 80.022 100.948 165.007 1 83.87 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . H 3 79.83 99.878 163.762 1 83.87 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . H 3 80.812 98.728 163.907 1 83.87 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . H 3 80.08 100.598 162.462 1 83.87 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . H 3 78.288 99.28 163.768 1 83.87 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . H 3 77.708 98.302 162.552 1 83.87 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . H 3 77.815 96.848 163.001 1 83.87 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . H 3 78.52 98.487 161.295 1 83.87 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . H 3 76.139 98.668 162.236 1 83.87 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . H 3 75.179 97.892 162.838 1 83.87 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . H 3 74.611 96.886 161.784 1 83.87 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . H 3 75.536 96.054 161.39 1 83.87 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . H 3 73.564 95.995 162.433 1 83.87 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . H 3 72.317 96.415 162.076 1 83.87 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . H 3 73.838 94.581 161.86 1 83.87 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . H 3 72.589 94.024 161.276 1 83.87 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . H 3 74.7 94.76 160.922 1 83.87 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . H 3 75.558 93.584 160.799 1 83.87 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . H 3 76.478 93.27 161.751 1 83.87 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . H 3 77.111 92.131 161.36 1 83.87 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . H 3 76.597 91.749 160.196 1 83.87 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . H 3 76.915 90.55 159.277 1 83.87 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . H 3 77.753 89.765 159.585 1 83.87 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . H 3 76.184 90.376 158.048 1 83.87 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . H 3 75.162 91.333 157.692 1 83.87 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . H 3 74.422 91.165 156.455 1 83.87 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . H 3 74.864 92.486 158.579 1 83.87 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . H 3 75.621 92.659 159.846 1 83.87 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #