data_7DMZ # _model_server_result.job_id idWy5y80USUq7NLRIaL0jA _model_server_result.datetime_utc '2024-11-29 17:08:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":501}' # _entry.id 7DMZ # _exptl.entry_id 7DMZ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 678.721 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'taccalonolide AJ' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DMZ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 L N N ? 5 N N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 H O2G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc2 H O3G GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 H O1B GTP . A GTP 501 1_555 I MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc4 J O2G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 J O3G GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc6 J O3B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc7 J O1B GTP . B GTP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'C34 H46 O14' _chem_comp.formula_weight 678.721 _chem_comp.id TAJ _chem_comp.mon_nstd_flag . _chem_comp.name 'taccalonolide AJ' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBP CBD TAJ sing 390 n n OBV CBE TAJ sing 391 n n OBJ CBI TAJ sing 392 n n OBJ CBE TAJ sing 393 n n OBS CBI TAJ doub 394 n n CBI CBH TAJ sing 395 n n CBE CBD TAJ sing 396 n n CBE CBF TAJ sing 397 n n CBD CBH TAJ sing 398 n n CBD CBB TAJ sing 399 n n OBQ CBH TAJ sing 400 n n CBH CBL TAJ sing 401 n n CBF CBG TAJ sing 402 n n CBB CBA TAJ sing 403 n n CBB CBC TAJ sing 404 n n OBT CBA TAJ sing 405 n n CBA CAW TAJ sing 406 n n CBG CBC TAJ sing 407 n n CBG CBM TAJ sing 408 n n CBC CAX TAJ sing 409 n n CBR CAX TAJ sing 410 n n OBO CAT TAJ sing 411 n n CAW CAX TAJ sing 412 n n CAW CAU TAJ sing 413 n n CAX CAY TAJ sing 414 n n CAT CAU TAJ sing 415 n n CAT CAS TAJ sing 416 n n CAU CAV TAJ sing 417 n n OBU CAS TAJ doub 418 n n CAY OAC TAJ sing 419 n n CAY CAZ TAJ sing 420 n n CAS CAM TAJ sing 421 n n OAC CAK TAJ sing 422 n n CAV CAZ TAJ sing 423 n n CAV CAQ TAJ sing 424 n n CAZ OAD TAJ sing 425 n n CAP CAL TAJ sing 426 n n CAK CAO TAJ sing 427 n n CAK OAG TAJ doub 428 n n CBN CAQ TAJ sing 429 n n CAM CAQ TAJ sing 430 n n CAM CAI TAJ sing 431 n n CAQ CAR TAJ sing 432 n n OAD CAL TAJ sing 433 n n CAI CAE TAJ sing 434 n n CAL OAH TAJ doub 435 n n CAR OAB TAJ sing 436 n n CAR CAA TAJ sing 437 n n OAB CAJ TAJ sing 438 n n CAE CAA TAJ sing 439 n n CAE OBK TAJ sing 440 n n CAA OBK TAJ sing 441 n n CAJ OAF TAJ doub 442 n n CAJ CAN TAJ sing 443 n n CAP H1 TAJ sing 444 n n CAP H2 TAJ sing 445 n n CAP H3 TAJ sing 446 n n CAZ H4 TAJ sing 447 n n CAY H5 TAJ sing 448 n n CAO H6 TAJ sing 449 n n CAO H7 TAJ sing 450 n n CAO H8 TAJ sing 451 n n CAV H9 TAJ sing 452 n n CBN H10 TAJ sing 453 n n CBN H11 TAJ sing 454 n n CBN H12 TAJ sing 455 n n CAR H13 TAJ sing 456 n n CAN H14 TAJ sing 457 n n CAN H15 TAJ sing 458 n n CAN H16 TAJ sing 459 n n CAA H17 TAJ sing 460 n n CAE H18 TAJ sing 461 n n CAI H19 TAJ sing 462 n n CAI H20 TAJ sing 463 n n CAM H21 TAJ sing 464 n n CAT H22 TAJ sing 465 n n OBO H23 TAJ sing 466 n n CAU H24 TAJ sing 467 n n CAW H25 TAJ sing 468 n n CBR H26 TAJ sing 469 n n CBR H27 TAJ sing 470 n n CBR H28 TAJ sing 471 n n CBA H29 TAJ sing 472 n n OBT H30 TAJ sing 473 n n CBB H31 TAJ sing 474 n n CBC H32 TAJ sing 475 n n CBP H33 TAJ sing 476 n n CBP H34 TAJ sing 477 n n CBP H35 TAJ sing 478 n n OBQ H36 TAJ sing 479 n n CBL H37 TAJ sing 480 n n CBL H38 TAJ sing 481 n n CBL H39 TAJ sing 482 n n OBV H40 TAJ sing 483 n n CBF H41 TAJ sing 484 n n CBF H42 TAJ sing 485 n n CBG H43 TAJ sing 486 n n CBM H44 TAJ sing 487 n n CBM H45 TAJ sing 488 n n CBM H46 TAJ sing 489 n n # _atom_sites.entry_id 7DMZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 GTP D 1 501 501 GTP GTP . H 3 GTP A 1 501 501 GTP GTP . I 4 MG A 1 502 502 MG MG . J 3 GTP B 1 501 501 GTP GTP . K 4 MG B 1 502 502 MG MG . L 5 TAJ E 1 501 501 TAJ TAJ . M 6 G2P E 1 502 501 G2P G2P . N 5 TAJ C 1 501 501 TAJ TAJ . O 6 G2P C 1 502 501 G2P G2P . P 5 TAJ F 1 501 501 TAJ TAJ . Q 6 G2P F 1 502 501 G2P G2P . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAH TAJ . . . P 5 117.602 93.04 75.538 1 76.64 ? OAH TAJ 501 F 1 HETATM 2 C CAL TAJ . . . P 5 118.279 93.511 74.673 1 76.64 ? CAL TAJ 501 F 1 HETATM 3 C CAP TAJ . . . P 5 117.856 94.575 73.719 1 76.64 ? CAP TAJ 501 F 1 HETATM 4 O OAD TAJ . . . P 5 119.551 93.134 74.437 1 76.64 ? OAD TAJ 501 F 1 HETATM 5 C CAZ TAJ . . . P 5 120.106 92.053 75.24 1 76.64 ? CAZ TAJ 501 F 1 HETATM 6 C CAY TAJ . . . P 5 120.244 92.592 76.661 1 76.64 ? CAY TAJ 501 F 1 HETATM 7 O OAC TAJ . . . P 5 120.868 93.9 76.592 1 76.64 ? OAC TAJ 501 F 1 HETATM 8 C CAK TAJ . . . P 5 120.069 94.969 76.355 1 76.64 ? CAK TAJ 501 F 1 HETATM 9 O OAG TAJ . . . P 5 120.369 95.86 75.617 1 76.64 ? OAG TAJ 501 F 1 HETATM 10 C CAO TAJ . . . P 5 118.801 94.868 77.13 1 76.64 ? CAO TAJ 501 F 1 HETATM 11 C CAV TAJ . . . P 5 121.416 91.586 74.588 1 76.64 ? CAV TAJ 501 F 1 HETATM 12 C CAQ TAJ . . . P 5 121.259 90.91 73.2 1 76.64 ? CAQ TAJ 501 F 1 HETATM 13 C CBN TAJ . . . P 5 120.537 89.555 73.313 1 76.64 ? CBN TAJ 501 F 1 HETATM 14 C CAR TAJ . . . P 5 120.428 91.816 72.257 1 76.64 ? CAR TAJ 501 F 1 HETATM 15 O OAB TAJ . . . P 5 121.102 93.095 72.15 1 76.64 ? OAB TAJ 501 F 1 HETATM 16 C CAJ TAJ . . . P 5 120.617 93.992 71.257 1 76.64 ? CAJ TAJ 501 F 1 HETATM 17 C CAN TAJ . . . P 5 121.665 94.388 70.275 1 76.64 ? CAN TAJ 501 F 1 HETATM 18 O OAF TAJ . . . P 5 119.492 94.398 71.28 1 76.64 ? OAF TAJ 501 F 1 HETATM 19 C CAA TAJ . . . P 5 120.32 91.232 70.873 1 76.64 ? CAA TAJ 501 F 1 HETATM 20 O OBK TAJ . . . P 5 121.243 91.746 69.887 1 76.64 ? OBK TAJ 501 F 1 HETATM 21 C CAE TAJ . . . P 5 121.407 90.394 70.368 1 76.64 ? CAE TAJ 501 F 1 HETATM 22 C CAI TAJ . . . P 5 122.645 90.135 71.166 1 76.64 ? CAI TAJ 501 F 1 HETATM 23 C CAM TAJ . . . P 5 122.673 90.725 72.577 1 76.64 ? CAM TAJ 501 F 1 HETATM 24 C CAS TAJ . . . P 5 123.548 89.931 73.513 1 76.64 ? CAS TAJ 501 F 1 HETATM 25 O OBU TAJ . . . P 5 124.108 88.908 73.181 1 76.64 ? OBU TAJ 501 F 1 HETATM 26 C CAT TAJ . . . P 5 123.687 90.497 74.914 1 76.64 ? CAT TAJ 501 F 1 HETATM 27 O OBO TAJ . . . P 5 124.494 89.657 75.741 1 76.64 ? OBO TAJ 501 F 1 HETATM 28 C CAU TAJ . . . P 5 122.318 90.762 75.533 1 76.64 ? CAU TAJ 501 F 1 HETATM 29 C CAW TAJ . . . P 5 122.449 91.505 76.852 1 76.64 ? CAW TAJ 501 F 1 HETATM 30 C CAX TAJ . . . P 5 121.108 91.706 77.572 1 76.64 ? CAX TAJ 501 F 1 HETATM 31 C CBR TAJ . . . P 5 120.373 90.381 77.84 1 76.64 ? CBR TAJ 501 F 1 HETATM 32 C CBA TAJ . . . P 5 123.379 90.995 77.961 1 76.64 ? CBA TAJ 501 F 1 HETATM 33 O OBT TAJ . . . P 5 124.669 91.58 77.87 1 76.64 ? OBT TAJ 501 F 1 HETATM 34 C CBB TAJ . . . P 5 122.703 91.367 79.289 1 76.64 ? CBB TAJ 501 F 1 HETATM 35 C CBC TAJ . . . P 5 121.635 92.376 78.867 1 76.64 ? CBC TAJ 501 F 1 HETATM 36 C CBD TAJ . . . P 5 123.597 91.922 80.423 1 76.64 ? CBD TAJ 501 F 1 HETATM 37 C CBP TAJ . . . P 5 124.539 90.837 80.964 1 76.64 ? CBP TAJ 501 F 1 HETATM 38 C CBH TAJ . . . P 5 124.449 93.177 80.071 1 76.64 ? CBH TAJ 501 F 1 HETATM 39 O OBQ TAJ . . . P 5 125.822 92.855 79.854 1 76.64 ? OBQ TAJ 501 F 1 HETATM 40 C CBL TAJ . . . P 5 123.959 94.028 78.911 1 76.64 ? CBL TAJ 501 F 1 HETATM 41 C CBI TAJ . . . P 5 124.439 93.953 81.387 1 76.64 ? CBI TAJ 501 F 1 HETATM 42 O OBS TAJ . . . P 5 125.078 94.929 81.67 1 76.64 ? OBS TAJ 501 F 1 HETATM 43 O OBJ TAJ . . . P 5 123.586 93.396 82.264 1 76.64 ? OBJ TAJ 501 F 1 HETATM 44 C CBE TAJ . . . P 5 122.696 92.482 81.561 1 76.64 ? CBE TAJ 501 F 1 HETATM 45 O OBV TAJ . . . P 5 122.34 91.466 82.441 1 76.64 ? OBV TAJ 501 F 1 HETATM 46 C CBF TAJ . . . P 5 121.448 93.242 81.152 1 76.64 ? CBF TAJ 501 F 1 HETATM 47 C CBG TAJ . . . P 5 120.662 92.565 80.027 1 76.64 ? CBG TAJ 501 F 1 HETATM 48 C CBM TAJ . . . P 5 119.426 93.373 79.64 1 76.64 ? CBM TAJ 501 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #