data_7DNC # _model_server_result.job_id C335cXvNAgnPhr73KBcvPA _model_server_result.datetime_utc '2024-11-24 22:52:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7DNC # _exptl.entry_id 7DNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 452.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DNC _cell.length_a 95.034 _cell.length_b 95.034 _cell.length_c 34.067 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 147 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 147 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C31 _struct_conn.ptnr2_label_comp_id FHR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FHR _struct_conn.ptnr2_auth_seq_id 201 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.776 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H32 N4 O4' _chem_comp.formula_weight 452.546 _chem_comp.id FHR _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]propan-2-yl]-1~{H}-indole-2-carboxamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C05 FHR doub 83 n y C10 C09 FHR sing 84 n y C10 N11 FHR sing 85 n y N12 C13 FHR sing 86 n n N12 C02 FHR sing 87 n n C13 C21 FHR sing 88 n n C13 C14 FHR sing 89 n n C15 C20 FHR sing 90 n n C15 C14 FHR sing 91 n n C15 C16 FHR sing 92 n n C17 C16 FHR sing 93 n n C17 C18 FHR sing 94 n n C20 C19 FHR sing 95 n n C21 N22 FHR sing 96 n n C21 O33 FHR doub 97 n n C24 C23 FHR sing 98 n n C24 C25 FHR sing 99 n n C26 C25 FHR sing 100 n n C02 C03 FHR sing 101 n n C02 O01 FHR doub 102 n n C03 C04 FHR doub 103 n y C03 N11 FHR sing 104 n y C04 C05 FHR sing 105 n y C05 C06 FHR sing 106 n y C06 C07 FHR doub 107 n y C07 C08 FHR sing 108 n y C08 C09 FHR doub 109 n y C18 C19 FHR sing 110 n n C23 C31 FHR sing 111 n n C23 N22 FHR sing 112 n n C25 C29 FHR sing 113 n n C27 N28 FHR sing 114 n n C29 N28 FHR sing 115 n n C29 O30 FHR doub 116 n n C31 O32 FHR doub 117 n n N12 H1 FHR sing 118 n n C13 H2 FHR sing 119 n n C15 H3 FHR sing 120 n n C17 H4 FHR sing 121 n n C17 H5 FHR sing 122 n n C20 H6 FHR sing 123 n n C20 H7 FHR sing 124 n n C24 H8 FHR sing 125 n n C24 H9 FHR sing 126 n n C26 H10 FHR sing 127 n n C26 H11 FHR sing 128 n n C04 H13 FHR sing 129 n n C06 H14 FHR sing 130 n n C07 H15 FHR sing 131 n n C08 H16 FHR sing 132 n n C09 H17 FHR sing 133 n n C14 H18 FHR sing 134 n n C14 H19 FHR sing 135 n n C16 H20 FHR sing 136 n n C16 H21 FHR sing 137 n n C18 H22 FHR sing 138 n n C18 H23 FHR sing 139 n n C19 H24 FHR sing 140 n n C19 H25 FHR sing 141 n n C23 H26 FHR sing 142 n n C25 H27 FHR sing 143 n n C27 H28 FHR sing 144 n n C27 H29 FHR sing 145 n n C31 H31 FHR sing 146 n n N11 H32 FHR sing 147 n n N22 H33 FHR sing 148 n n N28 H34 FHR sing 149 n n C26 C27 FHR sing 150 n n # _atom_sites.entry_id 7DNC _atom_sites.fract_transf_matrix[1][1] 0.010523 _atom_sites.fract_transf_matrix[1][2] 0.006075 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FHR A 1 201 201 FHR LIG . C 3 HOH A 1 301 20 HOH HOH . C 3 HOH A 2 302 13 HOH HOH . C 3 HOH A 3 303 36 HOH HOH . C 3 HOH A 4 304 21 HOH HOH . C 3 HOH A 5 305 43 HOH HOH . C 3 HOH A 6 306 4 HOH HOH . C 3 HOH A 7 307 53 HOH HOH . C 3 HOH A 8 308 33 HOH HOH . C 3 HOH A 9 309 19 HOH HOH . C 3 HOH A 10 310 92 HOH HOH . C 3 HOH A 11 311 44 HOH HOH . C 3 HOH A 12 312 49 HOH HOH . C 3 HOH A 13 313 38 HOH HOH . C 3 HOH A 14 314 25 HOH HOH . C 3 HOH A 15 315 5 HOH HOH . C 3 HOH A 16 316 78 HOH HOH . C 3 HOH A 17 317 22 HOH HOH . C 3 HOH A 18 318 66 HOH HOH . C 3 HOH A 19 319 42 HOH HOH . C 3 HOH A 20 320 47 HOH HOH . C 3 HOH A 21 321 65 HOH HOH . C 3 HOH A 22 322 107 HOH HOH . C 3 HOH A 23 323 3 HOH HOH . C 3 HOH A 24 324 56 HOH HOH . C 3 HOH A 25 325 11 HOH HOH . C 3 HOH A 26 326 1 HOH HOH . C 3 HOH A 27 327 96 HOH HOH . C 3 HOH A 28 328 114 HOH HOH . C 3 HOH A 29 329 8 HOH HOH . C 3 HOH A 30 330 10 HOH HOH . C 3 HOH A 31 331 59 HOH HOH . C 3 HOH A 32 332 82 HOH HOH . C 3 HOH A 33 333 67 HOH HOH . C 3 HOH A 34 334 16 HOH HOH . C 3 HOH A 35 335 23 HOH HOH . C 3 HOH A 36 336 2 HOH HOH . C 3 HOH A 37 337 117 HOH HOH . C 3 HOH A 38 338 120 HOH HOH . C 3 HOH A 39 339 68 HOH HOH . C 3 HOH A 40 340 124 HOH HOH . C 3 HOH A 41 341 90 HOH HOH . C 3 HOH A 42 342 27 HOH HOH . C 3 HOH A 43 343 57 HOH HOH . C 3 HOH A 44 344 121 HOH HOH . C 3 HOH A 45 345 6 HOH HOH . C 3 HOH A 46 346 77 HOH HOH . C 3 HOH A 47 347 63 HOH HOH . C 3 HOH A 48 348 40 HOH HOH . C 3 HOH A 49 349 130 HOH HOH . C 3 HOH A 50 350 111 HOH HOH . C 3 HOH A 51 351 9 HOH HOH . C 3 HOH A 52 352 64 HOH HOH . C 3 HOH A 53 353 46 HOH HOH . C 3 HOH A 54 354 113 HOH HOH . C 3 HOH A 55 355 26 HOH HOH . C 3 HOH A 56 356 89 HOH HOH . C 3 HOH A 57 357 17 HOH HOH . C 3 HOH A 58 358 28 HOH HOH . C 3 HOH A 59 359 60 HOH HOH . C 3 HOH A 60 360 134 HOH HOH . C 3 HOH A 61 361 71 HOH HOH . C 3 HOH A 62 362 18 HOH HOH . C 3 HOH A 63 363 37 HOH HOH . C 3 HOH A 64 364 35 HOH HOH . C 3 HOH A 65 365 51 HOH HOH . C 3 HOH A 66 366 100 HOH HOH . C 3 HOH A 67 367 106 HOH HOH . C 3 HOH A 68 368 29 HOH HOH . C 3 HOH A 69 369 139 HOH HOH . C 3 HOH A 70 370 116 HOH HOH . C 3 HOH A 71 371 34 HOH HOH . C 3 HOH A 72 372 80 HOH HOH . C 3 HOH A 73 373 15 HOH HOH . C 3 HOH A 74 374 31 HOH HOH . C 3 HOH A 75 375 123 HOH HOH . C 3 HOH A 76 376 50 HOH HOH . C 3 HOH A 77 377 48 HOH HOH . C 3 HOH A 78 378 62 HOH HOH . C 3 HOH A 79 379 87 HOH HOH . C 3 HOH A 80 380 95 HOH HOH . C 3 HOH A 81 381 72 HOH HOH . C 3 HOH A 82 382 110 HOH HOH . C 3 HOH A 83 383 118 HOH HOH . C 3 HOH A 84 384 45 HOH HOH . C 3 HOH A 85 385 132 HOH HOH . C 3 HOH A 86 386 32 HOH HOH . C 3 HOH A 87 387 61 HOH HOH . C 3 HOH A 88 388 7 HOH HOH . C 3 HOH A 89 389 109 HOH HOH . C 3 HOH A 90 390 30 HOH HOH . C 3 HOH A 91 391 12 HOH HOH . C 3 HOH A 92 392 138 HOH HOH . C 3 HOH A 93 393 85 HOH HOH . C 3 HOH A 94 394 81 HOH HOH . C 3 HOH A 95 395 69 HOH HOH . C 3 HOH A 96 396 14 HOH HOH . C 3 HOH A 97 397 54 HOH HOH . C 3 HOH A 98 398 41 HOH HOH . C 3 HOH A 99 399 104 HOH HOH . C 3 HOH A 100 400 52 HOH HOH . C 3 HOH A 101 401 76 HOH HOH . C 3 HOH A 102 402 105 HOH HOH . C 3 HOH A 103 403 91 HOH HOH . C 3 HOH A 104 404 83 HOH HOH . C 3 HOH A 105 405 94 HOH HOH . C 3 HOH A 106 406 122 HOH HOH . C 3 HOH A 107 407 55 HOH HOH . C 3 HOH A 108 408 24 HOH HOH . C 3 HOH A 109 409 97 HOH HOH . C 3 HOH A 110 410 39 HOH HOH . C 3 HOH A 111 411 84 HOH HOH . C 3 HOH A 112 412 137 HOH HOH . C 3 HOH A 113 413 75 HOH HOH . C 3 HOH A 114 414 74 HOH HOH . C 3 HOH A 115 415 135 HOH HOH . C 3 HOH A 116 416 129 HOH HOH . C 3 HOH A 117 417 136 HOH HOH . C 3 HOH A 118 418 128 HOH HOH . C 3 HOH A 119 419 73 HOH HOH . C 3 HOH A 120 420 126 HOH HOH . C 3 HOH A 121 421 103 HOH HOH . C 3 HOH A 122 422 127 HOH HOH . C 3 HOH A 123 423 115 HOH HOH . C 3 HOH A 124 424 79 HOH HOH . C 3 HOH A 125 425 102 HOH HOH . C 3 HOH A 126 426 98 HOH HOH . C 3 HOH A 127 427 101 HOH HOH . C 3 HOH A 128 428 112 HOH HOH . C 3 HOH A 129 429 119 HOH HOH . C 3 HOH A 130 430 86 HOH HOH . C 3 HOH A 131 431 125 HOH HOH . C 3 HOH A 132 432 93 HOH HOH . C 3 HOH A 133 433 99 HOH HOH . C 3 HOH A 134 434 133 HOH HOH . C 3 HOH A 135 435 88 HOH HOH . C 3 HOH A 136 436 131 HOH HOH . C 3 HOH A 137 437 70 HOH HOH . C 3 HOH A 138 438 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 FHR . . . B 2 -12.963 22.013 -12.775 1 12.28 ? C02 FHR 201 A 1 HETATM 2 C C07 FHR . . . B 2 -8.166 21.828 -16.418 1 15.58 ? C07 FHR 201 A 1 HETATM 3 C C08 FHR . . . B 2 -7.64 21.164 -15.313 1 14.39 ? C08 FHR 201 A 1 HETATM 4 C C09 FHR . . . B 2 -8.387 20.967 -14.174 1 13.97 ? C09 FHR 201 A 1 HETATM 5 C C10 FHR . . . B 2 -9.694 21.446 -14.172 1 13.17 ? C10 FHR 201 A 1 HETATM 6 C C05 FHR . . . B 2 -10.257 22.114 -15.285 1 13.41 ? C05 FHR 201 A 1 HETATM 7 C C06 FHR . . . B 2 -9.457 22.298 -16.427 1 14.29 ? C06 FHR 201 A 1 HETATM 8 C C04 FHR . . . B 2 -11.59 22.449 -14.936 1 12.86 ? C04 FHR 201 A 1 HETATM 9 C C03 FHR . . . B 2 -11.796 21.989 -13.659 1 12.67 ? C03 FHR 201 A 1 HETATM 10 N N11 FHR . . . B 2 -10.652 21.383 -13.196 1 13.23 ? N11 FHR 201 A 1 HETATM 11 O O01 FHR . . . B 2 -12.892 21.636 -11.6 1 12.8 ? O01 FHR 201 A 1 HETATM 12 N N12 FHR . . . B 2 -14.131 22.398 -13.324 1 12.4 ? N12 FHR 201 A 1 HETATM 13 C C13 FHR . . . B 2 -15.359 22.281 -12.57 1 11.86 ? C13 FHR 201 A 1 HETATM 14 C C21 FHR . . . B 2 -15.649 20.811 -12.298 1 11.61 ? C21 FHR 201 A 1 HETATM 15 O O33 FHR . . . B 2 -15.432 19.962 -13.159 1 13.13 ? O33 FHR 201 A 1 HETATM 16 C C14 FHR . . . B 2 -16.526 22.934 -13.315 1 13.21 ? C14 FHR 201 A 1 HETATM 17 C C15 FHR . . . B 2 -16.396 24.433 -13.409 1 13.36 ? C15 FHR 201 A 1 HETATM 18 C C20 FHR . . . B 2 -16.264 25.057 -14.639 1 15.62 ? C20 FHR 201 A 1 HETATM 19 C C19 FHR . . . B 2 -16.147 26.436 -14.727 1 17.82 ? C19 FHR 201 A 1 HETATM 20 C C18 FHR . . . B 2 -16.17 27.208 -13.592 1 16.76 ? C18 FHR 201 A 1 HETATM 21 C C17 FHR . . . B 2 -16.303 26.604 -12.364 1 14.53 ? C17 FHR 201 A 1 HETATM 22 C C16 FHR . . . B 2 -16.42 25.226 -12.275 1 14.53 ? C16 FHR 201 A 1 HETATM 23 O O30 FHR . . . B 2 -13.216 18.511 -7.657 1 13.03 ? O30 FHR 201 A 1 HETATM 24 C C29 FHR . . . B 2 -13.07 18.23 -8.859 1 13.31 ? C29 FHR 201 A 1 HETATM 25 N N28 FHR . . . B 2 -12.083 17.502 -9.377 1 14.81 ? N28 FHR 201 A 1 HETATM 26 C C27 FHR . . . B 2 -12.148 17.401 -10.833 1 15.8 ? C27 FHR 201 A 1 HETATM 27 C C26 FHR . . . B 2 -13.61 17.719 -11.113 1 13.86 ? C26 FHR 201 A 1 HETATM 28 C C25 FHR . . . B 2 -13.994 18.664 -9.98 1 13 ? C25 FHR 201 A 1 HETATM 29 C C24 FHR . . . B 2 -15.468 18.714 -9.549 1 12.52 ? C24 FHR 201 A 1 HETATM 30 C C23 FHR . . . B 2 -16.431 19.177 -10.644 1 12.06 ? C23 FHR 201 A 1 HETATM 31 N N22 FHR . . . B 2 -16.146 20.53 -11.091 1 11.88 ? N22 FHR 201 A 1 HETATM 32 C C31 FHR . . . B 2 -17.915 19.099 -10.233 1 12.29 ? C31 FHR 201 A 1 HETATM 33 O O32 FHR . . . B 2 -18.743 19.129 -11.165 1 12.97 ? O32 FHR 201 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #