data_7DNN # _model_server_result.job_id XOzsxqOPIdY7qOeNACC7Gw _model_server_result.datetime_utc '2024-11-16 06:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":402}' # _entry.id 7DNN # _exptl.entry_id 7DNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DNN _cell.length_a 73.905 _cell.length_b 102.511 _cell.length_c 136.09 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,J,K 1 1 C,D,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 147 A GLU 147 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc2 A OD2 ASP 179 A ASP 179 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc3 A ND1 HIS 269 A HIS 269 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 A NZ LYS 271 A LYS 271 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc5 A OE2 GLU 305 A GLU 305 1_555 F MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc6 C OE1 GLU 147 P GLU 147 1_555 H MN MN . P MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc7 C OD2 ASP 179 P ASP 179 1_555 H MN MN . P MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc8 C ND1 HIS 269 P HIS 269 1_555 H MN MN . P MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc9 C OE2 GLU 305 P GLU 305 1_555 H MN MN . P MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DNN _atom_sites.fract_transf_matrix[1][1] 0.013531 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 H9R A 1 401 401 H9R DRG . F 4 MN A 1 402 601 MN MN . G 5 IOD A 1 403 701 IOD IOD . H 4 MN P 1 401 602 MN MN . I 5 IOD P 1 402 702 IOD IOD . J 6 HOH A 1 501 349 HOH HOH . J 6 HOH A 2 502 394 HOH HOH . J 6 HOH A 3 503 114 HOH HOH . J 6 HOH A 4 504 497 HOH HOH . J 6 HOH A 5 505 65 HOH HOH . J 6 HOH A 6 506 207 HOH HOH . J 6 HOH A 7 507 131 HOH HOH . J 6 HOH A 8 508 9 HOH HOH . J 6 HOH A 9 509 283 HOH HOH . J 6 HOH A 10 510 553 HOH HOH . J 6 HOH A 11 511 90 HOH HOH . J 6 HOH A 12 512 417 HOH HOH . J 6 HOH A 13 513 86 HOH HOH . J 6 HOH A 14 514 377 HOH HOH . J 6 HOH A 15 515 544 HOH HOH . J 6 HOH A 16 516 291 HOH HOH . J 6 HOH A 17 517 16 HOH HOH . J 6 HOH A 18 518 498 HOH HOH . J 6 HOH A 19 519 296 HOH HOH . J 6 HOH A 20 520 19 HOH HOH . J 6 HOH A 21 521 404 HOH HOH . J 6 HOH A 22 522 278 HOH HOH . J 6 HOH A 23 523 13 HOH HOH . J 6 HOH A 24 524 78 HOH HOH . J 6 HOH A 25 525 535 HOH HOH . J 6 HOH A 26 526 37 HOH HOH . J 6 HOH A 27 527 364 HOH HOH . J 6 HOH A 28 528 313 HOH HOH . J 6 HOH A 29 529 60 HOH HOH . J 6 HOH A 30 530 30 HOH HOH . J 6 HOH A 31 531 379 HOH HOH . J 6 HOH A 32 532 363 HOH HOH . J 6 HOH A 33 533 89 HOH HOH . J 6 HOH A 34 534 551 HOH HOH . J 6 HOH A 35 535 8 HOH HOH . J 6 HOH A 36 536 421 HOH HOH . J 6 HOH A 37 537 23 HOH HOH . J 6 HOH A 38 538 300 HOH HOH . J 6 HOH A 39 539 22 HOH HOH . J 6 HOH A 40 540 52 HOH HOH . J 6 HOH A 41 541 64 HOH HOH . J 6 HOH A 42 542 68 HOH HOH . J 6 HOH A 43 543 567 HOH HOH . J 6 HOH A 44 544 11 HOH HOH . J 6 HOH A 45 545 3 HOH HOH . J 6 HOH A 46 546 5 HOH HOH . J 6 HOH A 47 547 111 HOH HOH . J 6 HOH A 48 548 72 HOH HOH . J 6 HOH A 49 549 194 HOH HOH . J 6 HOH A 50 550 18 HOH HOH . J 6 HOH A 51 551 538 HOH HOH . J 6 HOH A 52 552 524 HOH HOH . J 6 HOH A 53 553 546 HOH HOH . J 6 HOH A 54 554 125 HOH HOH . J 6 HOH A 55 555 383 HOH HOH . J 6 HOH A 56 556 303 HOH HOH . J 6 HOH A 57 557 66 HOH HOH . J 6 HOH A 58 558 67 HOH HOH . J 6 HOH A 59 559 556 HOH HOH . J 6 HOH A 60 560 153 HOH HOH . J 6 HOH A 61 561 396 HOH HOH . J 6 HOH A 62 562 295 HOH HOH . J 6 HOH A 63 563 126 HOH HOH . J 6 HOH A 64 564 2 HOH HOH . J 6 HOH A 65 565 512 HOH HOH . J 6 HOH A 66 566 537 HOH HOH . J 6 HOH A 67 567 408 HOH HOH . J 6 HOH A 68 568 38 HOH HOH . J 6 HOH A 69 569 105 HOH HOH . J 6 HOH A 70 570 192 HOH HOH . J 6 HOH A 71 571 507 HOH HOH . J 6 HOH A 72 572 98 HOH HOH . J 6 HOH A 73 573 543 HOH HOH . J 6 HOH A 74 574 501 HOH HOH . J 6 HOH A 75 575 80 HOH HOH . J 6 HOH A 76 576 500 HOH HOH . J 6 HOH A 77 577 83 HOH HOH . J 6 HOH A 78 578 217 HOH HOH . J 6 HOH A 79 579 516 HOH HOH . J 6 HOH A 80 580 200 HOH HOH . J 6 HOH A 81 581 362 HOH HOH . J 6 HOH A 82 582 388 HOH HOH . J 6 HOH A 83 583 57 HOH HOH . J 6 HOH A 84 584 213 HOH HOH . J 6 HOH A 85 585 406 HOH HOH . J 6 HOH A 86 586 301 HOH HOH . J 6 HOH A 87 587 21 HOH HOH . K 6 HOH B 1 201 381 HOH HOH . K 6 HOH B 2 202 221 HOH HOH . K 6 HOH B 3 203 12 HOH HOH . K 6 HOH B 4 204 351 HOH HOH . K 6 HOH B 5 205 31 HOH HOH . K 6 HOH B 6 206 91 HOH HOH . K 6 HOH B 7 207 85 HOH HOH . K 6 HOH B 8 208 14 HOH HOH . K 6 HOH B 9 209 545 HOH HOH . K 6 HOH B 10 210 293 HOH HOH . K 6 HOH B 11 211 26 HOH HOH . K 6 HOH B 12 212 290 HOH HOH . K 6 HOH B 13 213 505 HOH HOH . K 6 HOH B 14 214 281 HOH HOH . K 6 HOH B 15 215 10 HOH HOH . K 6 HOH B 16 216 25 HOH HOH . K 6 HOH B 17 217 28 HOH HOH . K 6 HOH B 18 218 55 HOH HOH . K 6 HOH B 19 219 39 HOH HOH . K 6 HOH B 20 220 209 HOH HOH . K 6 HOH B 21 221 24 HOH HOH . K 6 HOH B 22 222 93 HOH HOH . K 6 HOH B 23 223 539 HOH HOH . K 6 HOH B 24 224 92 HOH HOH . K 6 HOH B 25 225 7 HOH HOH . K 6 HOH B 26 226 155 HOH HOH . K 6 HOH B 27 227 197 HOH HOH . K 6 HOH B 28 228 120 HOH HOH . K 6 HOH B 29 229 412 HOH HOH . K 6 HOH B 30 230 499 HOH HOH . K 6 HOH B 31 231 75 HOH HOH . K 6 HOH B 32 232 228 HOH HOH . K 6 HOH B 33 233 367 HOH HOH . K 6 HOH B 34 234 196 HOH HOH . K 6 HOH B 35 235 357 HOH HOH . K 6 HOH B 36 236 360 HOH HOH . L 6 HOH P 1 501 46 HOH HOH . L 6 HOH P 2 502 17 HOH HOH . L 6 HOH P 3 503 41 HOH HOH . L 6 HOH P 4 504 70 HOH HOH . L 6 HOH P 5 505 76 HOH HOH . L 6 HOH P 6 506 101 HOH HOH . L 6 HOH P 7 507 365 HOH HOH . L 6 HOH P 8 508 391 HOH HOH . L 6 HOH P 9 509 282 HOH HOH . L 6 HOH P 10 510 285 HOH HOH . L 6 HOH P 11 511 549 HOH HOH . L 6 HOH P 12 512 32 HOH HOH . L 6 HOH P 13 513 99 HOH HOH . L 6 HOH P 14 514 552 HOH HOH . L 6 HOH P 15 515 372 HOH HOH . L 6 HOH P 16 516 47 HOH HOH . L 6 HOH P 17 517 29 HOH HOH . L 6 HOH P 18 518 49 HOH HOH . L 6 HOH P 19 519 565 HOH HOH . L 6 HOH P 20 520 395 HOH HOH . L 6 HOH P 21 521 541 HOH HOH . L 6 HOH P 22 522 509 HOH HOH . L 6 HOH P 23 523 48 HOH HOH . L 6 HOH P 24 524 550 HOH HOH . L 6 HOH P 25 525 94 HOH HOH . L 6 HOH P 26 526 15 HOH HOH . L 6 HOH P 27 527 514 HOH HOH . L 6 HOH P 28 528 386 HOH HOH . L 6 HOH P 29 529 427 HOH HOH . L 6 HOH P 30 530 220 HOH HOH . L 6 HOH P 31 531 409 HOH HOH . L 6 HOH P 32 532 361 HOH HOH . L 6 HOH P 33 533 563 HOH HOH . L 6 HOH P 34 534 407 HOH HOH . L 6 HOH P 35 535 368 HOH HOH . L 6 HOH P 36 536 405 HOH HOH . L 6 HOH P 37 537 536 HOH HOH . L 6 HOH P 38 538 542 HOH HOH . L 6 HOH P 39 539 115 HOH HOH . L 6 HOH P 40 540 378 HOH HOH . L 6 HOH P 41 541 40 HOH HOH . L 6 HOH P 42 542 496 HOH HOH . L 6 HOH P 43 543 425 HOH HOH . M 6 HOH Q 1 201 564 HOH HOH . M 6 HOH Q 2 202 82 HOH HOH . M 6 HOH Q 3 203 84 HOH HOH . M 6 HOH Q 4 204 53 HOH HOH . M 6 HOH Q 5 205 370 HOH HOH . M 6 HOH Q 6 206 20 HOH HOH . M 6 HOH Q 7 207 415 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 5 _atom_site.Cartn_x 59.377 _atom_site.Cartn_y 17.594 _atom_site.Cartn_z 10.981 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 66.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 402 _atom_site.auth_asym_id P _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 82 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #