data_7DNY # _model_server_result.job_id WK2o-mEnoo082iHrkDd8ag _model_server_result.datetime_utc '2024-12-26 20:25:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":903}' # _entry.id 7DNY # _exptl.entry_id 7DNY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DNY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 464 n n CBA CAB Y01 sing 465 n n CBA CAN Y01 sing 466 n n CAN CAJ Y01 sing 467 n n CAJ CAO Y01 sing 468 n n CAO CBB Y01 sing 469 n n CBB CAC Y01 sing 470 n n CBB CBE Y01 sing 471 n n CBE CAP Y01 sing 472 n n CBE CBI Y01 sing 473 n n CAP CAQ Y01 sing 474 n n CAQ CBG Y01 sing 475 n n CBG CBI Y01 sing 476 n n CBG CBD Y01 sing 477 n n CBI CAE Y01 sing 478 n n CBI CAU Y01 sing 479 n n CAU CAS Y01 sing 480 n n CAS CBF Y01 sing 481 n n CBF CBD Y01 sing 482 n n CBF CBH Y01 sing 483 n n CBD CAK Y01 sing 484 n n CAK CAI Y01 sing 485 n n CAI CAZ Y01 doub 486 n n CAZ CAV Y01 sing 487 n n CAZ CBH Y01 sing 488 n n CAV CBC Y01 sing 489 n n CBH CAD Y01 sing 490 n n CBH CAT Y01 sing 491 n n CAT CAR Y01 sing 492 n n CAR CBC Y01 sing 493 n n CBC OAW Y01 sing 494 n n OAW CAY Y01 sing 495 n n CAY OAG Y01 doub 496 n n CAY CAM Y01 sing 497 n n CAM CAL Y01 sing 498 n n CAL CAX Y01 sing 499 n n CAX OAH Y01 sing 500 n n CAX OAF Y01 doub 501 n n CAA HAA1 Y01 sing 502 n n CAA HAA2 Y01 sing 503 n n CAA HAA3 Y01 sing 504 n n CBA HBA Y01 sing 505 n n CAB HAB1 Y01 sing 506 n n CAB HAB2 Y01 sing 507 n n CAB HAB3 Y01 sing 508 n n CAN HAN1 Y01 sing 509 n n CAN HAN2 Y01 sing 510 n n CAJ HAJ1 Y01 sing 511 n n CAJ HAJ2 Y01 sing 512 n n CAO HAO1 Y01 sing 513 n n CAO HAO2 Y01 sing 514 n n CBB HBB Y01 sing 515 n n CAC HAC1 Y01 sing 516 n n CAC HAC2 Y01 sing 517 n n CAC HAC3 Y01 sing 518 n n CBE HBE Y01 sing 519 n n CAP HAP1 Y01 sing 520 n n CAP HAP2 Y01 sing 521 n n CAQ HAQ1 Y01 sing 522 n n CAQ HAQ2 Y01 sing 523 n n CBG HBG Y01 sing 524 n n CBD HBD Y01 sing 525 n n CAE HAE1 Y01 sing 526 n n CAE HAE2 Y01 sing 527 n n CAE HAE3 Y01 sing 528 n n CAU HAU1 Y01 sing 529 n n CAU HAU2 Y01 sing 530 n n CAS HAS1 Y01 sing 531 n n CAS HAS2 Y01 sing 532 n n CBF HBF Y01 sing 533 n n CAK HAK1 Y01 sing 534 n n CAK HAK2 Y01 sing 535 n n CAI HAI Y01 sing 536 n n CAV HAV1 Y01 sing 537 n n CAV HAV2 Y01 sing 538 n n CBC HBC Y01 sing 539 n n CAD HAD1 Y01 sing 540 n n CAD HAD2 Y01 sing 541 n n CAD HAD3 Y01 sing 542 n n CAT HAT1 Y01 sing 543 n n CAT HAT2 Y01 sing 544 n n CAR HAR1 Y01 sing 545 n n CAR HAR2 Y01 sing 546 n n CAM HAM1 Y01 sing 547 n n CAM HAM2 Y01 sing 548 n n CAL HAL1 Y01 sing 549 n n CAL HAL2 Y01 sing 550 n n OAH HAH Y01 sing 551 n n # _atom_sites.entry_id 7DNY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 901 1 Y01 Y01 . D 2 Y01 A 1 902 4 Y01 Y01 . E 2 Y01 A 1 903 5 Y01 Y01 . F 3 HT9 A 1 904 1 HT9 UNL . G 2 Y01 B 1 901 2 Y01 Y01 . H 2 Y01 B 1 902 3 Y01 Y01 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . E 2 128.228 115.693 90.533 1 105.5 ? CAA Y01 903 A 1 HETATM 2 C CBA Y01 . . . E 2 129.605 115.383 91.084 1 105.5 ? CBA Y01 903 A 1 HETATM 3 C CAB Y01 . . . E 2 130.209 116.614 91.735 1 105.5 ? CAB Y01 903 A 1 HETATM 4 C CAN Y01 . . . E 2 130.512 114.804 90.003 1 105.5 ? CAN Y01 903 A 1 HETATM 5 C CAJ Y01 . . . E 2 130.528 115.55 88.703 1 105.5 ? CAJ Y01 903 A 1 HETATM 6 C CAO Y01 . . . E 2 131.339 114.866 87.643 1 105.5 ? CAO Y01 903 A 1 HETATM 7 C CBB Y01 . . . E 2 131.2 115.471 86.238 1 105.5 ? CBB Y01 903 A 1 HETATM 8 C CAC Y01 . . . E 2 131.682 116.918 86.248 1 105.5 ? CAC Y01 903 A 1 HETATM 9 C CBE Y01 . . . E 2 131.921 114.603 85.191 1 105.5 ? CBE Y01 903 A 1 HETATM 10 C CAP Y01 . . . E 2 131.831 113.093 85.535 1 105.5 ? CAP Y01 903 A 1 HETATM 11 C CAQ Y01 . . . E 2 131.413 112.375 84.247 1 105.5 ? CAQ Y01 903 A 1 HETATM 12 C CBG Y01 . . . E 2 131.958 113.311 83.183 1 105.5 ? CBG Y01 903 A 1 HETATM 13 C CBI Y01 . . . E 2 131.513 114.694 83.684 1 105.5 ? CBI Y01 903 A 1 HETATM 14 C CAE Y01 . . . E 2 129.993 114.879 83.573 1 105.5 ? CAE Y01 903 A 1 HETATM 15 C CAU Y01 . . . E 2 132.254 115.705 82.803 1 105.5 ? CAU Y01 903 A 1 HETATM 16 C CAS Y01 . . . E 2 131.958 115.5 81.309 1 105.5 ? CAS Y01 903 A 1 HETATM 17 C CBF Y01 . . . E 2 132.253 114.077 80.805 1 105.5 ? CBF Y01 903 A 1 HETATM 18 C CBD Y01 . . . E 2 131.613 113.028 81.731 1 105.5 ? CBD Y01 903 A 1 HETATM 19 C CAK Y01 . . . E 2 132.089 111.637 81.337 1 105.5 ? CAK Y01 903 A 1 HETATM 20 C CAI Y01 . . . E 2 131.932 111.407 79.872 1 105.5 ? CAI Y01 903 A 1 HETATM 21 C CAZ Y01 . . . E 2 131.735 112.374 78.991 1 105.5 ? CAZ Y01 903 A 1 HETATM 22 C CAV Y01 . . . E 2 131.467 112.044 77.543 1 105.5 ? CAV Y01 903 A 1 HETATM 23 C CBH Y01 . . . E 2 131.838 113.861 79.318 1 105.5 ? CBH Y01 903 A 1 HETATM 24 C CAD Y01 . . . E 2 130.473 114.507 79.02 1 105.5 ? CAD Y01 903 A 1 HETATM 25 C CAT Y01 . . . E 2 132.905 114.446 78.363 1 105.5 ? CAT Y01 903 A 1 HETATM 26 C CAR Y01 . . . E 2 132.674 114.088 76.889 1 105.5 ? CAR Y01 903 A 1 HETATM 27 C CBC Y01 . . . E 2 132.57 112.599 76.68 1 105.5 ? CBC Y01 903 A 1 HETATM 28 O OAW Y01 . . . E 2 132.226 112.284 75.299 1 105.5 ? OAW Y01 903 A 1 HETATM 29 C CAY Y01 . . . E 2 132.297 111.012 74.911 1 105.5 ? CAY Y01 903 A 1 HETATM 30 O OAG Y01 . . . E 2 132.987 110.188 75.438 1 105.5 ? OAG Y01 903 A 1 HETATM 31 C CAM Y01 . . . E 2 131.379 110.718 73.766 1 105.5 ? CAM Y01 903 A 1 HETATM 32 C CAL Y01 . . . E 2 131.462 109.283 73.296 1 105.5 ? CAL Y01 903 A 1 HETATM 33 C CAX Y01 . . . E 2 130.461 108.905 72.22 1 105.5 ? CAX Y01 903 A 1 HETATM 34 O OAH Y01 . . . E 2 129.704 107.939 72.434 1 105.5 ? OAH Y01 903 A 1 HETATM 35 O OAF Y01 . . . E 2 130.438 109.581 71.174 1 105.5 ? OAF Y01 903 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #