data_7DNY
#
_model_server_result.job_id            Uut6QbePyTeejJ5nM7wGRA 
_model_server_result.datetime_utc      '2024-12-26 19:50:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dny 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":904}' 
#
_entry.id    7DNY 
#
_exptl.entry_id    7DNY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              654.709 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'coproporphyrin III' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DNY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DNY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C36 H38 N4 O8' 
_chem_comp.formula_weight    654.709 
_chem_comp.id                HT9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'coproporphyrin III' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C24 C16 HT9 sing 150 n n 
C16 C15 HT9 doub 151 n y 
C16 C17 HT9 sing 152 n y 
C27 C15 HT9 sing 153 n n 
C27 C28 HT9 sing 154 n n 
C35 C10 HT9 sing 155 n n 
C15 C18 HT9 sing 156 n y 
C20 C17 HT9 sing 157 n y 
C20 C13 HT9 doub 158 n y 
C28 C29 HT9 sing 159 n n 
C17 N4 HT9 doub 160 n y 
O5 C29 HT9 doub 161 n n 
C29 O6 HT9 sing 162 n n 
C10 C13 HT9 sing 163 n y 
C10 C11 HT9 doub 164 n y 
C13 N3 HT9 sing 165 n y 
C18 N4 HT9 sing 166 n y 
C18 C19 HT9 doub 167 n y 
C22 C21 HT9 sing 168 n n 
C22 C23 HT9 sing 169 n n 
C11 C21 HT9 sing 170 n n 
C11 C12 HT9 sing 171 n y 
C19 C3 HT9 sing 172 n y 
N3 C12 HT9 sing 173 n y 
O2 C23 HT9 doub 174 n n 
C23 O1 HT9 sing 175 n n 
C12 C14 HT9 doub 176 n y 
C3 N1 HT9 doub 177 n y 
C3 C2 HT9 sing 178 n y 
N1 C4 HT9 sing 179 n y 
C36 C2 HT9 sing 180 n n 
C14 C8 HT9 sing 181 n y 
C2 C1 HT9 doub 182 n y 
O3 C26 HT9 doub 183 n n 
N2 C8 HT9 sing 184 n y 
N2 C7 HT9 sing 185 n y 
C8 C5 HT9 doub 186 n y 
C4 C1 HT9 sing 187 n y 
C4 C9 HT9 doub 188 n y 
O4 C26 HT9 sing 189 n n 
C1 C34 HT9 sing 190 n n 
C26 C25 HT9 sing 191 n n 
C7 C9 HT9 sing 192 n y 
C7 C6 HT9 doub 193 n y 
C5 C6 HT9 sing 194 n y 
C5 C30 HT9 sing 195 n n 
C34 C25 HT9 sing 196 n n 
C31 C30 HT9 sing 197 n n 
C31 C32 HT9 sing 198 n n 
C6 C33 HT9 sing 199 n n 
O7 C32 HT9 doub 200 n n 
C32 O8 HT9 sing 201 n n 
C14 H1 HT9 sing 202 n n 
C19 H2 HT9 sing 203 n n 
C20 H3 HT9 sing 204 n n 
C21 H4 HT9 sing 205 n n 
C21 H5 HT9 sing 206 n n 
C22 H6 HT9 sing 207 n n 
C22 H7 HT9 sing 208 n n 
C24 H8 HT9 sing 209 n n 
C24 H9 HT9 sing 210 n n 
C24 H10 HT9 sing 211 n n 
C25 H11 HT9 sing 212 n n 
C25 H12 HT9 sing 213 n n 
C27 H13 HT9 sing 214 n n 
C27 H14 HT9 sing 215 n n 
C28 H15 HT9 sing 216 n n 
C28 H16 HT9 sing 217 n n 
C30 H17 HT9 sing 218 n n 
C30 H18 HT9 sing 219 n n 
C31 H19 HT9 sing 220 n n 
C31 H20 HT9 sing 221 n n 
C33 H21 HT9 sing 222 n n 
C33 H22 HT9 sing 223 n n 
C33 H23 HT9 sing 224 n n 
C34 H24 HT9 sing 225 n n 
C34 H25 HT9 sing 226 n n 
C35 H26 HT9 sing 227 n n 
C35 H27 HT9 sing 228 n n 
C35 H28 HT9 sing 229 n n 
C36 H29 HT9 sing 230 n n 
C36 H30 HT9 sing 231 n n 
C36 H31 HT9 sing 232 n n 
C9 H32 HT9 sing 233 n n 
N3 H34 HT9 sing 234 n n 
O1 H35 HT9 sing 235 n n 
O4 H36 HT9 sing 236 n n 
O6 H37 HT9 sing 237 n n 
O8 H38 HT9 sing 238 n n 
N2 H33 HT9 sing 239 n n 
#
_atom_sites.entry_id                     7DNY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 Y01 A 1 901 1 Y01 Y01 . 
D 2 Y01 A 1 902 4 Y01 Y01 . 
E 2 Y01 A 1 903 5 Y01 Y01 . 
F 3 HT9 A 1 904 1 HT9 UNL . 
G 2 Y01 B 1 901 2 Y01 Y01 . 
H 2 Y01 B 1 902 3 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HT9 . . . F 3 108.818 115.516 117.72 1 157.56 ? C1 HT9 904 A 1 
HETATM 2 C C10 HT9 . . . F 3 109.432 109.381 111.945 1 157.56 ? C10 HT9 904 A 1 
HETATM 3 C C11 HT9 . . . F 3 109.722 108.581 113.004 1 157.56 ? C11 HT9 904 A 1 
HETATM 4 C C12 HT9 . . . F 3 110.023 109.489 114.099 1 157.56 ? C12 HT9 904 A 1 
HETATM 5 C C13 HT9 . . . F 3 109.881 110.719 112.309 1 157.56 ? C13 HT9 904 A 1 
HETATM 6 C C14 HT9 . . . F 3 110.08 109.132 115.435 1 157.56 ? C14 HT9 904 A 1 
HETATM 7 C C15 HT9 . . . F 3 109.94 115.427 111.79 1 157.56 ? C15 HT9 904 A 1 
HETATM 8 C C16 HT9 . . . F 3 110.189 114.312 111.024 1 157.56 ? C16 HT9 904 A 1 
HETATM 9 C C17 HT9 . . . F 3 109.853 113.152 111.795 1 157.56 ? C17 HT9 904 A 1 
HETATM 10 C C18 HT9 . . . F 3 109.446 114.979 113.055 1 157.56 ? C18 HT9 904 A 1 
HETATM 11 C C19 HT9 . . . F 3 109.067 115.751 114.147 1 157.56 ? C19 HT9 904 A 1 
HETATM 12 C C2 HT9 . . . F 3 108.551 116.199 116.575 1 157.56 ? C2 HT9 904 A 1 
HETATM 13 C C20 HT9 . . . F 3 109.928 111.807 111.453 1 157.56 ? C20 HT9 904 A 1 
HETATM 14 C C21 HT9 . . . F 3 109.734 107.081 113.074 1 157.56 ? C21 HT9 904 A 1 
HETATM 15 C C22 HT9 . . . F 3 111.098 106.453 112.765 1 157.56 ? C22 HT9 904 A 1 
HETATM 16 C C23 HT9 . . . F 3 112.136 106.659 113.854 1 157.56 ? C23 HT9 904 A 1 
HETATM 17 C C24 HT9 . . . F 3 110.721 114.292 109.627 1 157.56 ? C24 HT9 904 A 1 
HETATM 18 C C25 HT9 . . . F 3 109.931 116.718 119.666 1 157.56 ? C25 HT9 904 A 1 
HETATM 19 C C26 HT9 . . . F 3 111.182 115.86 119.732 1 157.56 ? C26 HT9 904 A 1 
HETATM 20 C C27 HT9 . . . F 3 110.148 116.861 111.394 1 157.56 ? C27 HT9 904 A 1 
HETATM 21 C C28 HT9 . . . F 3 108.93 117.478 110.716 1 157.56 ? C28 HT9 904 A 1 
HETATM 22 C C29 HT9 . . . F 3 108.111 118.388 111.615 1 157.56 ? C29 HT9 904 A 1 
HETATM 23 C C3 HT9 . . . F 3 109.014 115.363 115.475 1 157.56 ? C3 HT9 904 A 1 
HETATM 24 C C30 HT9 . . . F 3 111.079 108.328 118.299 1 157.56 ? C30 HT9 904 A 1 
HETATM 25 C C31 HT9 . . . F 3 112.583 108.208 118.086 1 157.56 ? C31 HT9 904 A 1 
HETATM 26 C C32 HT9 . . . F 3 113.118 106.797 118.258 1 157.56 ? C32 HT9 904 A 1 
HETATM 27 C C33 HT9 . . . F 3 110.692 110.925 120.089 1 157.56 ? C33 HT9 904 A 1 
HETATM 28 C C34 HT9 . . . F 3 108.691 115.986 119.14 1 157.56 ? C34 HT9 904 A 1 
HETATM 29 C C35 HT9 . . . F 3 108.775 108.976 110.656 1 157.56 ? C35 HT9 904 A 1 
HETATM 30 C C36 HT9 . . . F 3 107.912 117.553 116.46 1 157.56 ? C36 HT9 904 A 1 
HETATM 31 C C4 HT9 . . . F 3 109.246 114.19 117.298 1 157.56 ? C4 HT9 904 A 1 
HETATM 32 C C5 HT9 . . . F 3 110.53 109.657 117.865 1 157.56 ? C5 HT9 904 A 1 
HETATM 33 C C6 HT9 . . . F 3 110.366 110.782 118.637 1 157.56 ? C6 HT9 904 A 1 
HETATM 34 C C7 HT9 . . . F 3 109.817 111.817 117.811 1 157.56 ? C7 HT9 904 A 1 
HETATM 35 C C8 HT9 . . . F 3 110.093 109.97 116.543 1 157.56 ? C8 HT9 904 A 1 
HETATM 36 C C9 HT9 . . . F 3 109.48 113.122 118.15 1 157.56 ? C9 HT9 904 A 1 
HETATM 37 N N1 HT9 . . . F 3 109.393 114.133 115.94 1 157.56 ? N1 HT9 904 A 1 
HETATM 38 N N2 HT9 . . . F 3 109.667 111.28 116.55 1 157.56 ? N2 HT9 904 A 1 
HETATM 39 N N3 HT9 . . . F 3 110.248 110.752 113.628 1 157.56 ? N3 HT9 904 A 1 
HETATM 40 N N4 HT9 . . . F 3 109.406 113.603 113.018 1 157.56 ? N4 HT9 904 A 1 
HETATM 41 O O1 HT9 . . . F 3 111.9 106.195 114.987 1 157.56 ? O1 HT9 904 A 1 
HETATM 42 O O2 HT9 . . . F 3 113.175 107.286 113.569 1 157.56 ? O2 HT9 904 A 1 
HETATM 43 O O3 HT9 . . . F 3 111.174 114.862 120.479 1 157.56 ? O3 HT9 904 A 1 
HETATM 44 O O4 HT9 . . . F 3 112.159 116.19 119.031 1 157.56 ? O4 HT9 904 A 1 
HETATM 45 O O5 HT9 . . . F 3 107.063 118.881 111.153 1 157.56 ? O5 HT9 904 A 1 
HETATM 46 O O6 HT9 . . . F 3 108.529 118.614 112.767 1 157.56 ? O6 HT9 904 A 1 
HETATM 47 O O7 HT9 . . . F 3 114.341 106.608 118.107 1 157.56 ? O7 HT9 904 A 1 
HETATM 48 O O8 HT9 . . . F 3 112.309 105.891 118.538 1 157.56 ? O8 HT9 904 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    46 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          22 
_model_server_stats.element_count           48 
#