data_7DNZ
#
_model_server_result.job_id            Jys4GhmmgmOQ2Jf-KxSjFQ 
_model_server_result.datetime_utc      '2024-12-26 11:18:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dnz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":901}' 
#
_entry.id    7DNZ 
#
_exptl.entry_id    7DNZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DNZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DNZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             H 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 165 n n 
CHA C4D HEM doub 166 n n 
CHA HHA HEM sing 167 n n 
CHB C4A HEM sing 168 n n 
CHB C1B HEM doub 169 n n 
CHB HHB HEM sing 170 n n 
CHC C4B HEM sing 171 n n 
CHC C1C HEM doub 172 n n 
CHC HHC HEM sing 173 n n 
CHD C4C HEM doub 174 n n 
CHD C1D HEM sing 175 n n 
CHD HHD HEM sing 176 n n 
C1A C2A HEM doub 177 n y 
C1A NA HEM sing 178 n y 
C2A C3A HEM sing 179 n y 
C2A CAA HEM sing 180 n n 
C3A C4A HEM doub 181 n y 
C3A CMA HEM sing 182 n n 
C4A NA HEM sing 183 n y 
CMA HMA HEM sing 184 n n 
CMA HMAA HEM sing 185 n n 
CMA HMAB HEM sing 186 n n 
CAA CBA HEM sing 187 n n 
CAA HAA HEM sing 188 n n 
CAA HAAA HEM sing 189 n n 
CBA CGA HEM sing 190 n n 
CBA HBA HEM sing 191 n n 
CBA HBAA HEM sing 192 n n 
CGA O1A HEM doub 193 n n 
CGA O2A HEM sing 194 n n 
C1B C2B HEM sing 195 n n 
C1B NB HEM sing 196 n n 
C2B C3B HEM doub 197 n n 
C2B CMB HEM sing 198 n n 
C3B C4B HEM sing 199 n n 
C3B CAB HEM sing 200 n n 
C4B NB HEM doub 201 n n 
CMB HMB HEM sing 202 n n 
CMB HMBA HEM sing 203 n n 
CMB HMBB HEM sing 204 n n 
CAB CBB HEM doub 205 n n 
CAB HAB HEM sing 206 n n 
CBB HBB HEM sing 207 n n 
CBB HBBA HEM sing 208 n n 
C1C C2C HEM sing 209 n y 
C1C NC HEM sing 210 n y 
C2C C3C HEM doub 211 n y 
C2C CMC HEM sing 212 n n 
C3C C4C HEM sing 213 n y 
C3C CAC HEM sing 214 n n 
C4C NC HEM sing 215 n y 
CMC HMC HEM sing 216 n n 
CMC HMCA HEM sing 217 n n 
CMC HMCB HEM sing 218 n n 
CAC CBC HEM doub 219 n n 
CAC HAC HEM sing 220 n n 
CBC HBC HEM sing 221 n n 
CBC HBCA HEM sing 222 n n 
C1D C2D HEM sing 223 n n 
C1D ND HEM doub 224 n n 
C2D C3D HEM doub 225 n n 
C2D CMD HEM sing 226 n n 
C3D C4D HEM sing 227 n n 
C3D CAD HEM sing 228 n n 
C4D ND HEM sing 229 n n 
CMD HMD HEM sing 230 n n 
CMD HMDA HEM sing 231 n n 
CMD HMDB HEM sing 232 n n 
CAD CBD HEM sing 233 n n 
CAD HAD HEM sing 234 n n 
CAD HADA HEM sing 235 n n 
CBD CGD HEM sing 236 n n 
CBD HBD HEM sing 237 n n 
CBD HBDA HEM sing 238 n n 
CGD O1D HEM doub 239 n n 
CGD O2D HEM sing 240 n n 
O2A H2A HEM sing 241 n n 
O2D H2D HEM sing 242 n n 
FE NA HEM sing 243 n n 
FE NB HEM sing 244 n n 
FE NC HEM sing 245 n n 
FE ND HEM sing 246 n n 
#
_atom_sites.entry_id                     7DNZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GSH A 1 901 2 GSH GSH . 
D 2 GSH A 1 902 3 GSH GSH . 
E 3 Y01 A 1 903 2 Y01 Y01 . 
F 3 Y01 A 1 904 4 Y01 Y01 . 
G 3 Y01 A 1 905 6 Y01 Y01 . 
H 4 HEM B 1 901 1 HEM HEM . 
I 2 GSH B 1 902 4 GSH GSH . 
J 2 GSH B 1 903 5 GSH GSH . 
K 3 Y01 B 1 904 1 Y01 Y01 . 
L 3 Y01 B 1 905 3 Y01 Y01 . 
M 3 Y01 B 1 906 5 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . H 4 116.749 113.239 120.194 1 105.58 ? CHA HEM 901 B 1 
HETATM 2 C CHB HEM . . . H 4 117.144 117.001 117.171 1 105.58 ? CHB HEM 901 B 1 
HETATM 3 C CHC HEM . . . H 4 115.322 119.847 120.696 1 105.58 ? CHC HEM 901 B 1 
HETATM 4 C CHD HEM . . . H 4 116.444 116.374 123.874 1 105.58 ? CHD HEM 901 B 1 
HETATM 5 C C1A HEM . . . H 4 116.913 113.993 119.055 1 105.58 ? C1A HEM 901 B 1 
HETATM 6 C C2A HEM . . . H 4 117.184 113.478 117.772 1 105.58 ? C2A HEM 901 B 1 
HETATM 7 C C3A HEM . . . H 4 117.295 114.537 116.923 1 105.58 ? C3A HEM 901 B 1 
HETATM 8 C C4A HEM . . . H 4 117.113 115.714 117.671 1 105.58 ? C4A HEM 901 B 1 
HETATM 9 C CMA HEM . . . H 4 117.565 114.48 115.442 1 105.58 ? CMA HEM 901 B 1 
HETATM 10 C CAA HEM . . . H 4 117.306 112.02 117.402 1 105.58 ? CAA HEM 901 B 1 
HETATM 11 C CBA HEM . . . H 4 118.465 111.311 118.115 1 105.58 ? CBA HEM 901 B 1 
HETATM 12 C CGA HEM . . . H 4 119.794 111.624 117.482 1 105.58 ? CGA HEM 901 B 1 
HETATM 13 O O1A HEM . . . H 4 119.852 112.223 116.387 1 105.58 ? O1A HEM 901 B 1 
HETATM 14 O O2A HEM . . . H 4 120.847 111.262 118.051 1 105.58 ? O2A HEM 901 B 1 
HETATM 15 C C1B HEM . . . H 4 116.627 118.086 117.897 1 105.58 ? C1B HEM 901 B 1 
HETATM 16 C C2B HEM . . . H 4 116.387 119.356 117.302 1 105.58 ? C2B HEM 901 B 1 
HETATM 17 C C3B HEM . . . H 4 115.869 120.166 118.272 1 105.58 ? C3B HEM 901 B 1 
HETATM 18 C C4B HEM . . . H 4 115.798 119.341 119.49 1 105.58 ? C4B HEM 901 B 1 
HETATM 19 C CMB HEM . . . H 4 116.662 119.721 115.867 1 105.58 ? CMB HEM 901 B 1 
HETATM 20 C CAB HEM . . . H 4 115.464 121.581 118.183 1 105.58 ? CAB HEM 901 B 1 
HETATM 21 C CBB HEM . . . H 4 114.369 121.939 117.519 1 105.58 ? CBB HEM 901 B 1 
HETATM 22 C C1C HEM . . . H 4 115.525 119.17 121.882 1 105.58 ? C1C HEM 901 B 1 
HETATM 23 C C2C HEM . . . H 4 115.364 119.721 123.155 1 105.58 ? C2C HEM 901 B 1 
HETATM 24 C C3C HEM . . . H 4 115.686 118.732 124.07 1 105.58 ? C3C HEM 901 B 1 
HETATM 25 C C4C HEM . . . H 4 116.062 117.574 123.332 1 105.58 ? C4C HEM 901 B 1 
HETATM 26 C CMC HEM . . . H 4 114.909 121.13 123.443 1 105.58 ? CMC HEM 901 B 1 
HETATM 27 C CAC HEM . . . H 4 115.656 118.86 125.535 1 105.58 ? CAC HEM 901 B 1 
HETATM 28 C CBC HEM . . . H 4 116.497 119.69 126.147 1 105.58 ? CBC HEM 901 B 1 
HETATM 29 C C1D HEM . . . H 4 116.575 115.231 123.09 1 105.58 ? C1D HEM 901 B 1 
HETATM 30 C C2D HEM . . . H 4 116.719 113.907 123.694 1 105.58 ? C2D HEM 901 B 1 
HETATM 31 C C3D HEM . . . H 4 116.803 113.036 122.673 1 105.58 ? C3D HEM 901 B 1 
HETATM 32 C C4D HEM . . . H 4 116.701 113.827 121.446 1 105.58 ? C4D HEM 901 B 1 
HETATM 33 C CMD HEM . . . H 4 116.769 113.592 125.165 1 105.58 ? CMD HEM 901 B 1 
HETATM 34 C CAD HEM . . . H 4 116.97 111.543 122.759 1 105.58 ? CAD HEM 901 B 1 
HETATM 35 C CBD HEM . . . H 4 118.464 111.212 122.777 1 105.58 ? CBD HEM 901 B 1 
HETATM 36 C CGD HEM . . . H 4 118.657 109.72 122.678 1 105.58 ? CGD HEM 901 B 1 
HETATM 37 O O1D HEM . . . H 4 117.67 108.975 122.497 1 105.58 ? O1D HEM 901 B 1 
HETATM 38 O O2D HEM . . . H 4 119.802 109.227 122.77 1 105.58 ? O2D HEM 901 B 1 
HETATM 39 N NA HEM . . . H 4 116.883 115.364 118.973 1 105.58 ? NA HEM 901 B 1 
HETATM 40 N NB HEM . . . H 4 116.259 118.119 119.184 1 105.58 ? NB HEM 901 B 1 
HETATM 41 N NC HEM . . . H 4 115.949 117.88 122.006 1 105.58 ? NC HEM 901 B 1 
HETATM 42 N ND HEM . . . H 4 116.562 115.12 121.755 1 105.58 ? ND HEM 901 B 1 
HETATM 43 FE FE HEM . . . H 4 116.402 116.501 120.518 1 105.58 ? FE HEM 901 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#