data_7DNZ
#
_model_server_result.job_id            xh2k4KzWGcpN3-bYnsKgoA 
_model_server_result.datetime_utc      '2024-12-26 11:15:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dnz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":904}' 
#
_entry.id    7DNZ 
#
_exptl.entry_id    7DNZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DNZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DNZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 492 n n 
CBA CAB Y01 sing 493 n n 
CBA CAN Y01 sing 494 n n 
CAN CAJ Y01 sing 495 n n 
CAJ CAO Y01 sing 496 n n 
CAO CBB Y01 sing 497 n n 
CBB CAC Y01 sing 498 n n 
CBB CBE Y01 sing 499 n n 
CBE CAP Y01 sing 500 n n 
CBE CBI Y01 sing 501 n n 
CAP CAQ Y01 sing 502 n n 
CAQ CBG Y01 sing 503 n n 
CBG CBI Y01 sing 504 n n 
CBG CBD Y01 sing 505 n n 
CBI CAE Y01 sing 506 n n 
CBI CAU Y01 sing 507 n n 
CAU CAS Y01 sing 508 n n 
CAS CBF Y01 sing 509 n n 
CBF CBD Y01 sing 510 n n 
CBF CBH Y01 sing 511 n n 
CBD CAK Y01 sing 512 n n 
CAK CAI Y01 sing 513 n n 
CAI CAZ Y01 doub 514 n n 
CAZ CAV Y01 sing 515 n n 
CAZ CBH Y01 sing 516 n n 
CAV CBC Y01 sing 517 n n 
CBH CAD Y01 sing 518 n n 
CBH CAT Y01 sing 519 n n 
CAT CAR Y01 sing 520 n n 
CAR CBC Y01 sing 521 n n 
CBC OAW Y01 sing 522 n n 
OAW CAY Y01 sing 523 n n 
CAY OAG Y01 doub 524 n n 
CAY CAM Y01 sing 525 n n 
CAM CAL Y01 sing 526 n n 
CAL CAX Y01 sing 527 n n 
CAX OAH Y01 sing 528 n n 
CAX OAF Y01 doub 529 n n 
CAA HAA1 Y01 sing 530 n n 
CAA HAA2 Y01 sing 531 n n 
CAA HAA3 Y01 sing 532 n n 
CBA HBA Y01 sing 533 n n 
CAB HAB1 Y01 sing 534 n n 
CAB HAB2 Y01 sing 535 n n 
CAB HAB3 Y01 sing 536 n n 
CAN HAN1 Y01 sing 537 n n 
CAN HAN2 Y01 sing 538 n n 
CAJ HAJ1 Y01 sing 539 n n 
CAJ HAJ2 Y01 sing 540 n n 
CAO HAO1 Y01 sing 541 n n 
CAO HAO2 Y01 sing 542 n n 
CBB HBB Y01 sing 543 n n 
CAC HAC1 Y01 sing 544 n n 
CAC HAC2 Y01 sing 545 n n 
CAC HAC3 Y01 sing 546 n n 
CBE HBE Y01 sing 547 n n 
CAP HAP1 Y01 sing 548 n n 
CAP HAP2 Y01 sing 549 n n 
CAQ HAQ1 Y01 sing 550 n n 
CAQ HAQ2 Y01 sing 551 n n 
CBG HBG Y01 sing 552 n n 
CBD HBD Y01 sing 553 n n 
CAE HAE1 Y01 sing 554 n n 
CAE HAE2 Y01 sing 555 n n 
CAE HAE3 Y01 sing 556 n n 
CAU HAU1 Y01 sing 557 n n 
CAU HAU2 Y01 sing 558 n n 
CAS HAS1 Y01 sing 559 n n 
CAS HAS2 Y01 sing 560 n n 
CBF HBF Y01 sing 561 n n 
CAK HAK1 Y01 sing 562 n n 
CAK HAK2 Y01 sing 563 n n 
CAI HAI Y01 sing 564 n n 
CAV HAV1 Y01 sing 565 n n 
CAV HAV2 Y01 sing 566 n n 
CBC HBC Y01 sing 567 n n 
CAD HAD1 Y01 sing 568 n n 
CAD HAD2 Y01 sing 569 n n 
CAD HAD3 Y01 sing 570 n n 
CAT HAT1 Y01 sing 571 n n 
CAT HAT2 Y01 sing 572 n n 
CAR HAR1 Y01 sing 573 n n 
CAR HAR2 Y01 sing 574 n n 
CAM HAM1 Y01 sing 575 n n 
CAM HAM2 Y01 sing 576 n n 
CAL HAL1 Y01 sing 577 n n 
CAL HAL2 Y01 sing 578 n n 
OAH HAH Y01 sing 579 n n 
#
_atom_sites.entry_id                     7DNZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GSH A 1 901 2 GSH GSH . 
D 2 GSH A 1 902 3 GSH GSH . 
E 3 Y01 A 1 903 2 Y01 Y01 . 
F 3 Y01 A 1 904 4 Y01 Y01 . 
G 3 Y01 A 1 905 6 Y01 Y01 . 
H 4 HEM B 1 901 1 HEM HEM . 
I 2 GSH B 1 902 4 GSH GSH . 
J 2 GSH B 1 903 5 GSH GSH . 
K 3 Y01 B 1 904 1 Y01 Y01 . 
L 3 Y01 B 1 905 3 Y01 Y01 . 
M 3 Y01 B 1 906 5 Y01 Y01 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . K 3 116.679 138.77 132.872 1 109.95 ? CAA Y01 904 B 1 
HETATM 2 C CBA Y01 . . . K 3 115.165 138.646 132.848 1 109.95 ? CBA Y01 904 B 1 
HETATM 3 C CAB Y01 . . . K 3 114.599 139.449 131.689 1 109.95 ? CAB Y01 904 B 1 
HETATM 4 C CAN Y01 . . . K 3 114.548 139.087 134.176 1 109.95 ? CAN Y01 904 B 1 
HETATM 5 C CAJ Y01 . . . K 3 115.183 138.515 135.418 1 109.95 ? CAJ Y01 904 B 1 
HETATM 6 C CAO Y01 . . . K 3 114.539 138.998 136.693 1 109.95 ? CAO Y01 904 B 1 
HETATM 7 C CBB Y01 . . . K 3 115.386 138.8 137.961 1 109.95 ? CBB Y01 904 B 1 
HETATM 8 C CAC Y01 . . . K 3 116.713 139.538 137.822 1 109.95 ? CAC Y01 904 B 1 
HETATM 9 C CBE Y01 . . . K 3 114.618 139.195 139.24 1 109.95 ? CBE Y01 904 B 1 
HETATM 10 C CAP Y01 . . . K 3 113.365 140.075 138.979 1 109.95 ? CAP Y01 904 B 1 
HETATM 11 C CAQ Y01 . . . K 3 112.362 139.751 140.102 1 109.95 ? CAQ Y01 904 B 1 
HETATM 12 C CBG Y01 . . . K 3 113.202 138.989 141.121 1 109.95 ? CBG Y01 904 B 1 
HETATM 13 C CBI Y01 . . . K 3 114.116 138.114 140.243 1 109.95 ? CBI Y01 904 B 1 
HETATM 14 C CAE Y01 . . . K 3 113.334 137.03 139.49 1 109.95 ? CAE Y01 904 B 1 
HETATM 15 C CAU Y01 . . . K 3 115.154 137.493 141.181 1 109.95 ? CAU Y01 904 B 1 
HETATM 16 C CAS Y01 . . . K 3 114.492 136.684 142.303 1 109.95 ? CAS Y01 904 B 1 
HETATM 17 C CBF Y01 . . . K 3 113.503 137.509 143.14 1 109.95 ? CBF Y01 904 B 1 
HETATM 18 C CBD Y01 . . . K 3 112.491 138.247 142.244 1 109.95 ? CBD Y01 904 B 1 
HETATM 19 C CAK Y01 . . . K 3 111.677 139.218 143.091 1 109.95 ? CAK Y01 904 B 1 
HETATM 20 C CAI Y01 . . . K 3 111.193 138.587 144.355 1 109.95 ? CAI Y01 904 B 1 
HETATM 21 C CAZ Y01 . . . K 3 111.616 137.424 144.823 1 109.95 ? CAZ Y01 904 B 1 
HETATM 22 C CAV Y01 . . . K 3 110.965 136.794 146.032 1 109.95 ? CAV Y01 904 B 1 
HETATM 23 C CBH Y01 . . . K 3 112.8 136.662 144.239 1 109.95 ? CBH Y01 904 B 1 
HETATM 24 C CAD Y01 . . . K 3 112.274 135.33 143.679 1 109.95 ? CAD Y01 904 B 1 
HETATM 25 C CAT Y01 . . . K 3 113.781 136.389 145.4 1 109.95 ? CAT Y01 904 B 1 
HETATM 26 C CAR Y01 . . . K 3 113.115 135.765 146.629 1 109.95 ? CAR Y01 904 B 1 
HETATM 27 C CBC Y01 . . . K 3 111.975 136.607 147.133 1 109.95 ? CBC Y01 904 B 1 
HETATM 28 O OAW Y01 . . . K 3 111.294 135.915 148.223 1 109.95 ? OAW Y01 904 B 1 
HETATM 29 C CAY Y01 . . . K 3 111.347 136.387 149.476 1 109.95 ? CAY Y01 904 B 1 
HETATM 30 O OAG Y01 . . . K 3 111.087 135.715 150.431 1 109.95 ? OAG Y01 904 B 1 
HETATM 31 C CAM Y01 . . . K 3 111.687 137.86 149.561 1 109.95 ? CAM Y01 904 B 1 
HETATM 32 C CAL Y01 . . . K 3 110.825 138.73 150.458 1 109.95 ? CAL Y01 904 B 1 
HETATM 33 C CAX Y01 . . . K 3 111.044 138.541 151.95 1 109.95 ? CAX Y01 904 B 1 
HETATM 34 O OAH Y01 . . . K 3 112.169 138.803 152.417 1 109.95 ? OAH Y01 904 B 1 
HETATM 35 O OAF Y01 . . . K 3 110.09 138.137 152.641 1 109.95 ? OAF Y01 904 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           35 
#