data_7DOI
#
_model_server_result.job_id            xbngTKTrM5VqAWzZuksDmg 
_model_server_result.datetime_utc      '2024-11-21 11:22:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7doi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":1008}' 
#
_entry.id    7DOI 
#
_exptl.entry_id    7DOI 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DOI 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DOI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D O3' U 12 P U 20 1_555 O P1 HCU . P HCU 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? 
metalc ? metalc1 A OD1 ASN 210 A ASN 209 1_555 M MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 A OD2 ASP 219 A ASP 218 1_555 L MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc3 A ND1 HIS 296 A HIS 295 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 A SG CYS 302 A CYS 301 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
metalc ? metalc5 A SG CYS 307 A CYS 306 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc6 A SG CYS 311 A CYS 310 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc7 A SG CYS 488 A CYS 487 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? 
metalc ? metalc8 A SG CYS 646 A CYS 645 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc9 A SG CYS 647 A CYS 646 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc10 A OD2 ASP 762 A ASP 761 1_555 K MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? 
metalc ? metalc11 L MG MG . A MG 1006 1_555 N O4 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc12 M MG MG . A MG 1007 1_555 N O6 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc13 M MG MG . A MG 1007 1_555 N O2 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? 
hydrog WATSON-CRICK hydrog1 D N1 G 2 P G 10 1_555 E N3 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 D N2 G 2 P G 10 1_555 E O2 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 D O6 G 2 P G 10 1_555 E N4 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 D N1 A 3 P A 11 1_555 E N3 U 13 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 D N6 A 3 P A 11 1_555 E O4 U 13 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 D N3 U 4 P U 12 1_555 E N1 A 12 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 D O4 U 4 P U 12 1_555 E N6 A 12 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 D N3 U 5 P U 13 1_555 E N1 A 11 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 D O4 U 5 P U 13 1_555 E N6 A 11 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 D N1 A 6 P A 14 1_555 E N3 U 10 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 D N6 A 6 P A 14 1_555 E O4 U 10 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 D N1 A 7 P A 15 1_555 E N3 U 9 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 D N6 A 7 P A 15 1_555 E O4 U 9 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 D N1 G 8 P G 16 1_555 E N3 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 D N2 G 8 P G 16 1_555 E O2 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog16 D O6 G 8 P G 16 1_555 E N4 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog17 D N3 U 9 P U 17 1_555 E N1 A 7 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 D O4 U 9 P U 17 1_555 E N6 A 7 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 D N3 U 10 P U 18 1_555 E N1 A 6 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 D O4 U 10 P U 18 1_555 E N6 A 6 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog21 D N1 A 11 P A 19 1_555 E N3 U 5 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog22 D N6 A 11 P A 19 1_555 E O4 U 5 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog23 D N3 U 12 P U 20 1_555 E N1 A 4 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog24 D O4 U 12 P U 20 1_555 E N6 A 4 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 414 n n 
P1 O2 POP sing 415 n n 
P1 O3 POP sing 416 n n 
P1 O POP sing 417 n n 
O2 HO2 POP sing 418 n n 
O P2 POP sing 419 n n 
P2 O4 POP doub 420 n n 
P2 O5 POP sing 421 n n 
P2 O6 POP sing 422 n n 
O5 HO5 POP sing 423 n n 
#
_atom_sites.entry_id                     7DOI 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 6 ZN A 1 1001 1001 ZN ZN . 
H 6 ZN A 1 1002 1002 ZN ZN . 
I 7 POP A 1 1003 1003 POP POP . 
J 8 MG A 1 1004 1004 MG MG . 
K 8 MG A 1 1005 1005 MG MG . 
L 8 MG A 1 1006 1007 MG MG . 
M 8 MG A 1 1007 1008 MG MG . 
N 7 POP A 1 1008 1201 POP POP . 
O 9 HCU P 1 1201 1201 HCU LIG . 
P 10 HOH A 1 1101 1106 HOH HOH . 
Q 10 HOH P 1 1301 1105 HOH HOH . 
Q 10 HOH P 2 1302 1104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . N 7 160.105 140.777 102.77 1 50.07 ? P1 POP 1008 A 1 
HETATM 2 O O1 POP . . . N 7 161.49 141.222 102.388 1 50.07 ? O1 POP 1008 A 1 
HETATM 3 O O2 POP . . . N 7 159.214 141.905 103.22 1 50.07 ? O2 POP 1008 A 1 
HETATM 4 O O3 POP . . . N 7 160.058 139.551 103.643 1 50.07 ? O3 POP 1008 A 1 
HETATM 5 O O POP . . . N 7 159.472 140.273 101.384 1 50.07 ? O POP 1008 A 1 
HETATM 6 P P2 POP . . . N 7 157.89 140.224 101.115 1 50.07 ? P2 POP 1008 A 1 
HETATM 7 O O4 POP . . . N 7 157.673 141.315 100.097 1 50.07 ? O4 POP 1008 A 1 
HETATM 8 O O5 POP . . . N 7 157.66 138.835 100.589 1 50.07 ? O5 POP 1008 A 1 
HETATM 9 O O6 POP . . . N 7 157.243 140.486 102.448 1 50.07 ? O6 POP 1008 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           9 
#