data_7DOI # _model_server_result.job_id QlqYWabU4KFp_Mf12tusww _model_server_result.datetime_utc '2024-11-21 10:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7doi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1201}' # _entry.id 7DOI # _exptl.entry_id 7DOI _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 333.238 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R)-4-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-(hydroxymethyl)butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DOI _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DOI _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D O3' U 12 P U 20 1_555 O P1 HCU . P HCU 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? metalc ? metalc1 A OD1 ASN 210 A ASN 209 1_555 M MG MG . A MG 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A OD2 ASP 219 A ASP 218 1_555 L MG MG . A MG 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc3 A ND1 HIS 296 A HIS 295 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 A SG CYS 302 A CYS 301 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 A SG CYS 307 A CYS 306 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 A SG CYS 311 A CYS 310 1_555 G ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc7 A SG CYS 488 A CYS 487 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc8 A SG CYS 646 A CYS 645 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc9 A SG CYS 647 A CYS 646 1_555 H ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc10 A OD2 ASP 762 A ASP 761 1_555 K MG MG . A MG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc11 L MG MG . A MG 1006 1_555 N O4 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc12 M MG MG . A MG 1007 1_555 N O6 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc13 M MG MG . A MG 1007 1_555 N O2 POP . A POP 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? hydrog WATSON-CRICK hydrog1 D N1 G 2 P G 10 1_555 E N3 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 D N2 G 2 P G 10 1_555 E O2 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 D O6 G 2 P G 10 1_555 E N4 C 14 T C 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 D N1 A 3 P A 11 1_555 E N3 U 13 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 D N6 A 3 P A 11 1_555 E O4 U 13 T U 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 D N3 U 4 P U 12 1_555 E N1 A 12 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 D O4 U 4 P U 12 1_555 E N6 A 12 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 D N3 U 5 P U 13 1_555 E N1 A 11 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 D O4 U 5 P U 13 1_555 E N6 A 11 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 D N1 A 6 P A 14 1_555 E N3 U 10 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 D N6 A 6 P A 14 1_555 E O4 U 10 T U 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 D N1 A 7 P A 15 1_555 E N3 U 9 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 D N6 A 7 P A 15 1_555 E O4 U 9 T U 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 D N1 G 8 P G 16 1_555 E N3 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 D N2 G 8 P G 16 1_555 E O2 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 D O6 G 8 P G 16 1_555 E N4 C 8 T C 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 D N3 U 9 P U 17 1_555 E N1 A 7 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 D O4 U 9 P U 17 1_555 E N6 A 7 T A 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 D N3 U 10 P U 18 1_555 E N1 A 6 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 D O4 U 10 P U 18 1_555 E N6 A 6 T A 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 D N1 A 11 P A 19 1_555 E N3 U 5 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 D N6 A 11 P A 19 1_555 E O4 U 5 T U 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 D N3 U 12 P U 20 1_555 E N1 A 4 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 D O4 U 12 P U 20 1_555 E N6 A 4 T A 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H16 N5 O6 P' _chem_comp.formula_weight 333.238 _chem_comp.id HCU _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R)-4-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-(hydroxymethyl)butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Penciclovir phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 P1 HCU doub 244 n n C9 O3 HCU sing 245 n n C9 C8 HCU sing 246 n n O3 P1 HCU sing 247 n n C7 C6 HCU sing 248 n n C7 C8 HCU sing 249 n n C6 N3 HCU sing 250 n n P1 O4 HCU sing 251 n n C8 C10 HCU sing 252 n n C10 O2 HCU sing 253 n n N3 C5 HCU sing 254 n y N3 C3 HCU sing 255 n y C5 N4 HCU doub 256 n y C3 N2 HCU sing 257 n n C3 C4 HCU doub 258 n y N4 C4 HCU sing 259 n y N2 C2 HCU sing 260 n n C4 C1 HCU sing 261 n n C2 N5 HCU sing 262 n n C2 N1 HCU doub 263 n n C1 N1 HCU sing 264 n n C1 O1 HCU doub 265 n n P1 O6 HCU sing 266 n n C5 H1 HCU sing 267 n n C6 H2 HCU sing 268 n n C6 H3 HCU sing 269 n n C7 H4 HCU sing 270 n n C7 H5 HCU sing 271 n n C8 H6 HCU sing 272 n n C10 H7 HCU sing 273 n n C10 H8 HCU sing 274 n n N2 H9 HCU sing 275 n n N5 H10 HCU sing 276 n n N5 H11 HCU sing 277 n n C9 H12 HCU sing 278 n n C9 H13 HCU sing 279 n n O2 H14 HCU sing 280 n n O4 H15 HCU sing 281 n n O6 H16 HCU sing 282 n n # _atom_sites.entry_id 7DOI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 6 ZN A 1 1001 1001 ZN ZN . H 6 ZN A 1 1002 1002 ZN ZN . I 7 POP A 1 1003 1003 POP POP . J 8 MG A 1 1004 1004 MG MG . K 8 MG A 1 1005 1005 MG MG . L 8 MG A 1 1006 1007 MG MG . M 8 MG A 1 1007 1008 MG MG . N 7 POP A 1 1008 1201 POP POP . O 9 HCU P 1 1201 1201 HCU LIG . P 10 HOH A 1 1101 1106 HOH HOH . Q 10 HOH P 1 1301 1105 HOH HOH . Q 10 HOH P 2 1302 1104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HCU . . . O 9 128.214 132.863 144.743 1 0.5 ? N1 HCU 1201 P 1 HETATM 2 N N3 HCU . . . O 9 129.603 133.883 141.106 1 0.5 ? N3 HCU 1201 P 1 HETATM 3 C C4 HCU . . . O 9 128.697 134.388 143.024 1 0.5 ? C4 HCU 1201 P 1 HETATM 4 C C5 HCU . . . O 9 129.365 135.181 141.13 1 0.5 ? C5 HCU 1201 P 1 HETATM 5 C C6 HCU . . . O 9 130.213 133.206 139.983 1 0.5 ? C6 HCU 1201 P 1 HETATM 6 C C7 HCU . . . O 9 131.567 133.734 139.708 1 0.5 ? C7 HCU 1201 P 1 HETATM 7 C C8 HCU . . . O 9 132.404 132.741 140.16 1 0.5 ? C8 HCU 1201 P 1 HETATM 8 C C10 HCU . . . O 9 133.318 133.557 140.791 1 0.5 ? C10 HCU 1201 P 1 HETATM 9 C C1 HCU . . . O 9 128.221 134.114 144.304 1 0.5 ? C1 HCU 1201 P 1 HETATM 10 C C2 HCU . . . O 9 128.727 131.885 144.015 1 0.5 ? C2 HCU 1201 P 1 HETATM 11 N N2 HCU . . . O 9 129.205 132.107 142.798 1 0.5 ? N2 HCU 1201 P 1 HETATM 12 C C3 HCU . . . O 9 129.205 133.348 142.275 1 0.5 ? C3 HCU 1201 P 1 HETATM 13 O O1 HCU . . . O 9 127.668 135.114 145.115 1 0.5 ? O1 HCU 1201 P 1 HETATM 14 N N4 HCU . . . O 9 128.813 135.495 142.283 1 0.5 ? N4 HCU 1201 P 1 HETATM 15 N N5 HCU . . . O 9 128.743 130.537 144.542 1 0.5 ? N5 HCU 1201 P 1 HETATM 16 C C9 HCU . . . O 9 132.819 131.466 139.595 1 0.5 ? C9 HCU 1201 P 1 HETATM 17 O O2 HCU . . . O 9 133.351 133.279 142.206 1 0.5 ? O2 HCU 1201 P 1 HETATM 18 O O3 HCU . . . O 9 131.891 130.678 139.699 1 0.5 ? O3 HCU 1201 P 1 HETATM 19 P P1 HCU . . . O 9 131.695 129.309 140.057 1 0.5 ? P1 HCU 1201 P 1 HETATM 20 O O4 HCU . . . O 9 131.672 129.171 141.387 1 0.5 ? O4 HCU 1201 P 1 HETATM 21 O O5 HCU . . . O 9 132.76 128.478 139.498 1 0.5 ? O5 HCU 1201 P 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 64 _model_server_stats.query_time_ms 516 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 21 #