data_7DP4 # _model_server_result.job_id '_F7KOLVBz6norySa3QEGMg' _model_server_result.datetime_utc '2024-11-24 20:57:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 7DP4 # _exptl.entry_id 7DP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DP4 _cell.length_a 81.434 _cell.length_b 81.434 _cell.length_c 105.37 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 114 A CYS 114 1_555 H S2 BME . A BME 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? covale ? covale2 A SG CYS 242 A CYS 242 1_555 E S2 BME . A BME 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 7DP4 _atom_sites.fract_transf_matrix[1][1] 0.01228 _atom_sites.fract_transf_matrix[1][2] 0.00709 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00949 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 401 1 UMP UMP . C 3 MTX A 1 402 1 MTX MTX . D 4 BME A 1 403 1 BME BME . E 4 BME A 1 404 2 BME BME . F 4 BME A 1 405 3 BME BME . G 4 BME A 1 406 4 BME BME . H 4 BME A 1 407 5 BME BME . I 5 HOH A 1 501 282 HOH HOH . I 5 HOH A 2 502 113 HOH HOH . I 5 HOH A 3 503 273 HOH HOH . I 5 HOH A 4 504 150 HOH HOH . I 5 HOH A 5 505 165 HOH HOH . I 5 HOH A 6 506 222 HOH HOH . I 5 HOH A 7 507 9 HOH HOH . I 5 HOH A 8 508 84 HOH HOH . I 5 HOH A 9 509 233 HOH HOH . I 5 HOH A 10 510 127 HOH HOH . I 5 HOH A 11 511 219 HOH HOH . I 5 HOH A 12 512 279 HOH HOH . I 5 HOH A 13 513 64 HOH HOH . I 5 HOH A 14 514 255 HOH HOH . I 5 HOH A 15 515 166 HOH HOH . I 5 HOH A 16 516 171 HOH HOH . I 5 HOH A 17 517 14 HOH HOH . I 5 HOH A 18 518 144 HOH HOH . I 5 HOH A 19 519 88 HOH HOH . I 5 HOH A 20 520 90 HOH HOH . I 5 HOH A 21 521 132 HOH HOH . I 5 HOH A 22 522 204 HOH HOH . I 5 HOH A 23 523 13 HOH HOH . I 5 HOH A 24 524 47 HOH HOH . I 5 HOH A 25 525 8 HOH HOH . I 5 HOH A 26 526 187 HOH HOH . I 5 HOH A 27 527 58 HOH HOH . I 5 HOH A 28 528 277 HOH HOH . I 5 HOH A 29 529 180 HOH HOH . I 5 HOH A 30 530 59 HOH HOH . I 5 HOH A 31 531 164 HOH HOH . I 5 HOH A 32 532 68 HOH HOH . I 5 HOH A 33 533 244 HOH HOH . I 5 HOH A 34 534 114 HOH HOH . I 5 HOH A 35 535 6 HOH HOH . I 5 HOH A 36 536 111 HOH HOH . I 5 HOH A 37 537 51 HOH HOH . I 5 HOH A 38 538 270 HOH HOH . I 5 HOH A 39 539 232 HOH HOH . I 5 HOH A 40 540 78 HOH HOH . I 5 HOH A 41 541 281 HOH HOH . I 5 HOH A 42 542 160 HOH HOH . I 5 HOH A 43 543 249 HOH HOH . I 5 HOH A 44 544 149 HOH HOH . I 5 HOH A 45 545 136 HOH HOH . I 5 HOH A 46 546 179 HOH HOH . I 5 HOH A 47 547 198 HOH HOH . I 5 HOH A 48 548 126 HOH HOH . I 5 HOH A 49 549 12 HOH HOH . I 5 HOH A 50 550 200 HOH HOH . I 5 HOH A 51 551 197 HOH HOH . I 5 HOH A 52 552 157 HOH HOH . I 5 HOH A 53 553 264 HOH HOH . I 5 HOH A 54 554 66 HOH HOH . I 5 HOH A 55 555 147 HOH HOH . I 5 HOH A 56 556 38 HOH HOH . I 5 HOH A 57 557 276 HOH HOH . I 5 HOH A 58 558 201 HOH HOH . I 5 HOH A 59 559 22 HOH HOH . I 5 HOH A 60 560 216 HOH HOH . I 5 HOH A 61 561 242 HOH HOH . I 5 HOH A 62 562 19 HOH HOH . I 5 HOH A 63 563 77 HOH HOH . I 5 HOH A 64 564 109 HOH HOH . I 5 HOH A 65 565 272 HOH HOH . I 5 HOH A 66 566 11 HOH HOH . I 5 HOH A 67 567 87 HOH HOH . I 5 HOH A 68 568 212 HOH HOH . I 5 HOH A 69 569 30 HOH HOH . I 5 HOH A 70 570 65 HOH HOH . I 5 HOH A 71 571 37 HOH HOH . I 5 HOH A 72 572 70 HOH HOH . I 5 HOH A 73 573 79 HOH HOH . I 5 HOH A 74 574 221 HOH HOH . I 5 HOH A 75 575 23 HOH HOH . I 5 HOH A 76 576 263 HOH HOH . I 5 HOH A 77 577 75 HOH HOH . I 5 HOH A 78 578 152 HOH HOH . I 5 HOH A 79 579 229 HOH HOH . I 5 HOH A 80 580 80 HOH HOH . I 5 HOH A 81 581 16 HOH HOH . I 5 HOH A 82 582 266 HOH HOH . I 5 HOH A 83 583 24 HOH HOH . I 5 HOH A 84 584 122 HOH HOH . I 5 HOH A 85 585 239 HOH HOH . I 5 HOH A 86 586 34 HOH HOH . I 5 HOH A 87 587 146 HOH HOH . I 5 HOH A 88 588 258 HOH HOH . I 5 HOH A 89 589 228 HOH HOH . I 5 HOH A 90 590 192 HOH HOH . I 5 HOH A 91 591 93 HOH HOH . I 5 HOH A 92 592 29 HOH HOH . I 5 HOH A 93 593 211 HOH HOH . I 5 HOH A 94 594 27 HOH HOH . I 5 HOH A 95 595 85 HOH HOH . I 5 HOH A 96 596 71 HOH HOH . I 5 HOH A 97 597 195 HOH HOH . I 5 HOH A 98 598 121 HOH HOH . I 5 HOH A 99 599 7 HOH HOH . I 5 HOH A 100 600 49 HOH HOH . I 5 HOH A 101 601 163 HOH HOH . I 5 HOH A 102 602 2 HOH HOH . I 5 HOH A 103 603 120 HOH HOH . I 5 HOH A 104 604 173 HOH HOH . I 5 HOH A 105 605 55 HOH HOH . I 5 HOH A 106 606 188 HOH HOH . I 5 HOH A 107 607 26 HOH HOH . I 5 HOH A 108 608 1 HOH HOH . I 5 HOH A 109 609 31 HOH HOH . I 5 HOH A 110 610 45 HOH HOH . I 5 HOH A 111 611 275 HOH HOH . I 5 HOH A 112 612 33 HOH HOH . I 5 HOH A 113 613 62 HOH HOH . I 5 HOH A 114 614 103 HOH HOH . I 5 HOH A 115 615 76 HOH HOH . I 5 HOH A 116 616 194 HOH HOH . I 5 HOH A 117 617 20 HOH HOH . I 5 HOH A 118 618 238 HOH HOH . I 5 HOH A 119 619 220 HOH HOH . I 5 HOH A 120 620 231 HOH HOH . I 5 HOH A 121 621 99 HOH HOH . I 5 HOH A 122 622 86 HOH HOH . I 5 HOH A 123 623 207 HOH HOH . I 5 HOH A 124 624 53 HOH HOH . I 5 HOH A 125 625 25 HOH HOH . I 5 HOH A 126 626 41 HOH HOH . I 5 HOH A 127 627 205 HOH HOH . I 5 HOH A 128 628 40 HOH HOH . I 5 HOH A 129 629 237 HOH HOH . I 5 HOH A 130 630 36 HOH HOH . I 5 HOH A 131 631 10 HOH HOH . I 5 HOH A 132 632 236 HOH HOH . I 5 HOH A 133 633 267 HOH HOH . I 5 HOH A 134 634 91 HOH HOH . I 5 HOH A 135 635 83 HOH HOH . I 5 HOH A 136 636 174 HOH HOH . I 5 HOH A 137 637 199 HOH HOH . I 5 HOH A 138 638 209 HOH HOH . I 5 HOH A 139 639 162 HOH HOH . I 5 HOH A 140 640 131 HOH HOH . I 5 HOH A 141 641 223 HOH HOH . I 5 HOH A 142 642 50 HOH HOH . I 5 HOH A 143 643 214 HOH HOH . I 5 HOH A 144 644 48 HOH HOH . I 5 HOH A 145 645 191 HOH HOH . I 5 HOH A 146 646 259 HOH HOH . I 5 HOH A 147 647 128 HOH HOH . I 5 HOH A 148 648 5 HOH HOH . I 5 HOH A 149 649 115 HOH HOH . I 5 HOH A 150 650 54 HOH HOH . I 5 HOH A 151 651 156 HOH HOH . I 5 HOH A 152 652 81 HOH HOH . I 5 HOH A 153 653 96 HOH HOH . I 5 HOH A 154 654 208 HOH HOH . I 5 HOH A 155 655 4 HOH HOH . I 5 HOH A 156 656 230 HOH HOH . I 5 HOH A 157 657 18 HOH HOH . I 5 HOH A 158 658 217 HOH HOH . I 5 HOH A 159 659 215 HOH HOH . I 5 HOH A 160 660 243 HOH HOH . I 5 HOH A 161 661 112 HOH HOH . I 5 HOH A 162 662 63 HOH HOH . I 5 HOH A 163 663 44 HOH HOH . I 5 HOH A 164 664 248 HOH HOH . I 5 HOH A 165 665 203 HOH HOH . I 5 HOH A 166 666 92 HOH HOH . I 5 HOH A 167 667 32 HOH HOH . I 5 HOH A 168 668 268 HOH HOH . I 5 HOH A 169 669 110 HOH HOH . I 5 HOH A 170 670 269 HOH HOH . I 5 HOH A 171 671 234 HOH HOH . I 5 HOH A 172 672 21 HOH HOH . I 5 HOH A 173 673 253 HOH HOH . I 5 HOH A 174 674 116 HOH HOH . I 5 HOH A 175 675 17 HOH HOH . I 5 HOH A 176 676 134 HOH HOH . I 5 HOH A 177 677 123 HOH HOH . I 5 HOH A 178 678 98 HOH HOH . I 5 HOH A 179 679 35 HOH HOH . I 5 HOH A 180 680 141 HOH HOH . I 5 HOH A 181 681 261 HOH HOH . I 5 HOH A 182 682 155 HOH HOH . I 5 HOH A 183 683 46 HOH HOH . I 5 HOH A 184 684 256 HOH HOH . I 5 HOH A 185 685 260 HOH HOH . I 5 HOH A 186 686 257 HOH HOH . I 5 HOH A 187 687 133 HOH HOH . I 5 HOH A 188 688 117 HOH HOH . I 5 HOH A 189 689 3 HOH HOH . I 5 HOH A 190 690 240 HOH HOH . I 5 HOH A 191 691 125 HOH HOH . I 5 HOH A 192 692 226 HOH HOH . I 5 HOH A 193 693 15 HOH HOH . I 5 HOH A 194 694 262 HOH HOH . I 5 HOH A 195 695 246 HOH HOH . I 5 HOH A 196 696 118 HOH HOH . I 5 HOH A 197 697 278 HOH HOH . I 5 HOH A 198 698 57 HOH HOH . I 5 HOH A 199 699 39 HOH HOH . I 5 HOH A 200 700 213 HOH HOH . I 5 HOH A 201 701 94 HOH HOH . I 5 HOH A 202 702 42 HOH HOH . I 5 HOH A 203 703 250 HOH HOH . I 5 HOH A 204 704 74 HOH HOH . I 5 HOH A 205 705 69 HOH HOH . I 5 HOH A 206 706 210 HOH HOH . I 5 HOH A 207 707 206 HOH HOH . I 5 HOH A 208 708 43 HOH HOH . I 5 HOH A 209 709 73 HOH HOH . I 5 HOH A 210 710 224 HOH HOH . I 5 HOH A 211 711 119 HOH HOH . I 5 HOH A 212 712 218 HOH HOH . I 5 HOH A 213 713 60 HOH HOH . I 5 HOH A 214 714 247 HOH HOH . I 5 HOH A 215 715 181 HOH HOH . I 5 HOH A 216 716 154 HOH HOH . I 5 HOH A 217 717 271 HOH HOH . I 5 HOH A 218 718 241 HOH HOH . I 5 HOH A 219 719 138 HOH HOH . I 5 HOH A 220 720 189 HOH HOH . I 5 HOH A 221 721 202 HOH HOH . I 5 HOH A 222 722 283 HOH HOH . I 5 HOH A 223 723 193 HOH HOH . I 5 HOH A 224 724 124 HOH HOH . I 5 HOH A 225 725 196 HOH HOH . I 5 HOH A 226 726 101 HOH HOH . I 5 HOH A 227 727 178 HOH HOH . I 5 HOH A 228 728 254 HOH HOH . I 5 HOH A 229 729 280 HOH HOH . I 5 HOH A 230 730 252 HOH HOH . I 5 HOH A 231 731 184 HOH HOH . I 5 HOH A 232 732 170 HOH HOH . I 5 HOH A 233 733 190 HOH HOH . I 5 HOH A 234 734 168 HOH HOH . I 5 HOH A 235 735 153 HOH HOH . I 5 HOH A 236 736 104 HOH HOH . I 5 HOH A 237 737 172 HOH HOH . I 5 HOH A 238 738 227 HOH HOH . I 5 HOH A 239 739 82 HOH HOH . I 5 HOH A 240 740 137 HOH HOH . I 5 HOH A 241 741 67 HOH HOH . I 5 HOH A 242 742 158 HOH HOH . I 5 HOH A 243 743 175 HOH HOH . I 5 HOH A 244 744 52 HOH HOH . I 5 HOH A 245 745 183 HOH HOH . I 5 HOH A 246 746 56 HOH HOH . I 5 HOH A 247 747 100 HOH HOH . I 5 HOH A 248 748 145 HOH HOH . I 5 HOH A 249 749 161 HOH HOH . I 5 HOH A 250 750 159 HOH HOH . I 5 HOH A 251 751 105 HOH HOH . I 5 HOH A 252 752 176 HOH HOH . I 5 HOH A 253 753 274 HOH HOH . I 5 HOH A 254 754 148 HOH HOH . I 5 HOH A 255 755 130 HOH HOH . I 5 HOH A 256 756 235 HOH HOH . I 5 HOH A 257 757 169 HOH HOH . I 5 HOH A 258 758 225 HOH HOH . I 5 HOH A 259 759 72 HOH HOH . I 5 HOH A 260 760 108 HOH HOH . I 5 HOH A 261 761 251 HOH HOH . I 5 HOH A 262 762 142 HOH HOH . I 5 HOH A 263 763 102 HOH HOH . I 5 HOH A 264 764 135 HOH HOH . I 5 HOH A 265 765 97 HOH HOH . I 5 HOH A 266 766 139 HOH HOH . I 5 HOH A 267 767 265 HOH HOH . I 5 HOH A 268 768 106 HOH HOH . I 5 HOH A 269 769 186 HOH HOH . I 5 HOH A 270 770 61 HOH HOH . I 5 HOH A 271 771 95 HOH HOH . I 5 HOH A 272 772 140 HOH HOH . I 5 HOH A 273 773 151 HOH HOH . I 5 HOH A 274 774 182 HOH HOH . I 5 HOH A 275 775 89 HOH HOH . I 5 HOH A 276 776 129 HOH HOH . I 5 HOH A 277 777 167 HOH HOH . I 5 HOH A 278 778 143 HOH HOH . I 5 HOH A 279 779 107 HOH HOH . I 5 HOH A 280 780 245 HOH HOH . I 5 HOH A 281 781 185 HOH HOH . I 5 HOH A 282 782 28 HOH HOH . I 5 HOH A 283 783 177 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . F 4 32.72 -20.642 58.016 1 57.29 ? C1 BME 405 A 1 HETATM 2 C C2 BME . . . F 4 32.185 -19.55 57.143 1 56.52 ? C2 BME 405 A 1 HETATM 3 O O1 BME . . . F 4 34.027 -20.339 58.453 1 52.97 ? O1 BME 405 A 1 HETATM 4 S S2 BME . . . F 4 30.383 -19.547 56.957 1 60.21 ? S2 BME 405 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 832 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #