data_7DP6 # _model_server_result.job_id o_kYF7ISLDCBBgYAs8YNdg _model_server_result.datetime_utc '2024-10-20 03:37:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dp6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 7DP6 # _exptl.entry_id 7DP6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DP6 _cell.length_a 80.72 _cell.length_b 80.72 _cell.length_c 104.445 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DP6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 242 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.131 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 7DP6 _atom_sites.fract_transf_matrix[1][1] 0.012389 _atom_sites.fract_transf_matrix[1][2] 0.007153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 401 1 UMP UMP . C 3 BME A 1 402 1 BME BME . D 3 BME A 1 403 2 BME BME . E 4 GOL A 1 404 1 GOL GOL . F 4 GOL A 1 405 2 GOL GOL . G 4 GOL A 1 406 3 GOL GOL . H 4 GOL A 1 407 4 GOL GOL . I 5 HOH A 1 501 53 HOH HOH . I 5 HOH A 2 502 125 HOH HOH . I 5 HOH A 3 503 19 HOH HOH . I 5 HOH A 4 504 68 HOH HOH . I 5 HOH A 5 505 117 HOH HOH . I 5 HOH A 6 506 70 HOH HOH . I 5 HOH A 7 507 111 HOH HOH . I 5 HOH A 8 508 81 HOH HOH . I 5 HOH A 9 509 87 HOH HOH . I 5 HOH A 10 510 122 HOH HOH . I 5 HOH A 11 511 4 HOH HOH . I 5 HOH A 12 512 60 HOH HOH . I 5 HOH A 13 513 50 HOH HOH . I 5 HOH A 14 514 75 HOH HOH . I 5 HOH A 15 515 13 HOH HOH . I 5 HOH A 16 516 52 HOH HOH . I 5 HOH A 17 517 88 HOH HOH . I 5 HOH A 18 518 10 HOH HOH . I 5 HOH A 19 519 31 HOH HOH . I 5 HOH A 20 520 101 HOH HOH . I 5 HOH A 21 521 91 HOH HOH . I 5 HOH A 22 522 78 HOH HOH . I 5 HOH A 23 523 86 HOH HOH . I 5 HOH A 24 524 83 HOH HOH . I 5 HOH A 25 525 26 HOH HOH . I 5 HOH A 26 526 23 HOH HOH . I 5 HOH A 27 527 104 HOH HOH . I 5 HOH A 28 528 12 HOH HOH . I 5 HOH A 29 529 109 HOH HOH . I 5 HOH A 30 530 97 HOH HOH . I 5 HOH A 31 531 33 HOH HOH . I 5 HOH A 32 532 27 HOH HOH . I 5 HOH A 33 533 2 HOH HOH . I 5 HOH A 34 534 80 HOH HOH . I 5 HOH A 35 535 1 HOH HOH . I 5 HOH A 36 536 71 HOH HOH . I 5 HOH A 37 537 17 HOH HOH . I 5 HOH A 38 538 9 HOH HOH . I 5 HOH A 39 539 100 HOH HOH . I 5 HOH A 40 540 93 HOH HOH . I 5 HOH A 41 541 25 HOH HOH . I 5 HOH A 42 542 94 HOH HOH . I 5 HOH A 43 543 15 HOH HOH . I 5 HOH A 44 544 59 HOH HOH . I 5 HOH A 45 545 14 HOH HOH . I 5 HOH A 46 546 54 HOH HOH . I 5 HOH A 47 547 79 HOH HOH . I 5 HOH A 48 548 40 HOH HOH . I 5 HOH A 49 549 106 HOH HOH . I 5 HOH A 50 550 82 HOH HOH . I 5 HOH A 51 551 84 HOH HOH . I 5 HOH A 52 552 28 HOH HOH . I 5 HOH A 53 553 119 HOH HOH . I 5 HOH A 54 554 3 HOH HOH . I 5 HOH A 55 555 108 HOH HOH . I 5 HOH A 56 556 95 HOH HOH . I 5 HOH A 57 557 24 HOH HOH . I 5 HOH A 58 558 76 HOH HOH . I 5 HOH A 59 559 58 HOH HOH . I 5 HOH A 60 560 30 HOH HOH . I 5 HOH A 61 561 102 HOH HOH . I 5 HOH A 62 562 34 HOH HOH . I 5 HOH A 63 563 67 HOH HOH . I 5 HOH A 64 564 103 HOH HOH . I 5 HOH A 65 565 69 HOH HOH . I 5 HOH A 66 566 49 HOH HOH . I 5 HOH A 67 567 63 HOH HOH . I 5 HOH A 68 568 114 HOH HOH . I 5 HOH A 69 569 8 HOH HOH . I 5 HOH A 70 570 124 HOH HOH . I 5 HOH A 71 571 98 HOH HOH . I 5 HOH A 72 572 89 HOH HOH . I 5 HOH A 73 573 32 HOH HOH . I 5 HOH A 74 574 5 HOH HOH . I 5 HOH A 75 575 48 HOH HOH . I 5 HOH A 76 576 77 HOH HOH . I 5 HOH A 77 577 21 HOH HOH . I 5 HOH A 78 578 113 HOH HOH . I 5 HOH A 79 579 107 HOH HOH . I 5 HOH A 80 580 18 HOH HOH . I 5 HOH A 81 581 73 HOH HOH . I 5 HOH A 82 582 99 HOH HOH . I 5 HOH A 83 583 22 HOH HOH . I 5 HOH A 84 584 39 HOH HOH . I 5 HOH A 85 585 7 HOH HOH . I 5 HOH A 86 586 120 HOH HOH . I 5 HOH A 87 587 20 HOH HOH . I 5 HOH A 88 588 37 HOH HOH . I 5 HOH A 89 589 11 HOH HOH . I 5 HOH A 90 590 35 HOH HOH . I 5 HOH A 91 591 110 HOH HOH . I 5 HOH A 92 592 47 HOH HOH . I 5 HOH A 93 593 44 HOH HOH . I 5 HOH A 94 594 118 HOH HOH . I 5 HOH A 95 595 6 HOH HOH . I 5 HOH A 96 596 29 HOH HOH . I 5 HOH A 97 597 116 HOH HOH . I 5 HOH A 98 598 123 HOH HOH . I 5 HOH A 99 599 92 HOH HOH . I 5 HOH A 100 600 61 HOH HOH . I 5 HOH A 101 601 90 HOH HOH . I 5 HOH A 102 602 16 HOH HOH . I 5 HOH A 103 603 105 HOH HOH . I 5 HOH A 104 604 51 HOH HOH . I 5 HOH A 105 605 96 HOH HOH . I 5 HOH A 106 606 112 HOH HOH . I 5 HOH A 107 607 85 HOH HOH . I 5 HOH A 108 608 57 HOH HOH . I 5 HOH A 109 609 41 HOH HOH . I 5 HOH A 110 610 38 HOH HOH . I 5 HOH A 111 611 74 HOH HOH . I 5 HOH A 112 612 115 HOH HOH . I 5 HOH A 113 613 46 HOH HOH . I 5 HOH A 114 614 45 HOH HOH . I 5 HOH A 115 615 36 HOH HOH . I 5 HOH A 116 616 55 HOH HOH . I 5 HOH A 117 617 56 HOH HOH . I 5 HOH A 118 618 65 HOH HOH . I 5 HOH A 119 619 64 HOH HOH . I 5 HOH A 120 620 66 HOH HOH . I 5 HOH A 121 621 72 HOH HOH . I 5 HOH A 122 622 62 HOH HOH . I 5 HOH A 123 623 121 HOH HOH . I 5 HOH A 124 624 42 HOH HOH . I 5 HOH A 125 625 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 19.991 -26.273 5.138 1 83.31 ? C1 GOL 407 A 1 HETATM 2 O O1 GOL . . . H 4 18.852 -27.072 5.446 1 85.26 ? O1 GOL 407 A 1 HETATM 3 C C2 GOL . . . H 4 20.04 -24.989 5.949 1 83.28 ? C2 GOL 407 A 1 HETATM 4 O O2 GOL . . . H 4 19.159 -24.028 5.376 1 78.23 ? O2 GOL 407 A 1 HETATM 5 C C3 GOL . . . H 4 19.703 -25.164 7.418 1 80.93 ? C3 GOL 407 A 1 HETATM 6 O O3 GOL . . . H 4 20.746 -24.692 8.271 1 80.51 ? O3 GOL 407 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #