data_7DPD
#
_model_server_result.job_id            T5XyWinPBG5o8KSFdVeSEQ 
_model_server_result.datetime_utc      '2024-11-22 22:40:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dpd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":300}' 
#
_entry.id    7DPD 
#
_exptl.entry_id    7DPD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DPD 
_cell.length_a            78.286 
_cell.length_b            85.9 
_cell.length_c            111.511 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DPD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,F 1 1 
B,E,G 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 161 A CYS 147 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc2 A SG CYS 164 A CYS 150 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc3 A SG CYS 186 A CYS 172 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc4 A SG CYS 192 A CYS 178 1_555 C ZN ZN . A ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc5 A O VAL 222 A VAL 208 1_555 D NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 A O ARG 224 A ARG 210 1_555 D NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? 
metalc ? metalc7 A O VAL 227 A VAL 213 1_555 D NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc8 D NA NA . A NA 301 1_555 F O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? 
metalc ? metalc9 D NA NA . A NA 301 4_556 B OE1 GLN 221 B GLN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc10 D NA NA . A NA 301 1_555 G O HOH . B HOH 433 4_456 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc11 B SG CYS 161 B CYS 147 1_555 E ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc12 B SG CYS 164 B CYS 150 1_555 E ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc13 B SG CYS 186 B CYS 172 1_555 E ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc14 B SG CYS 192 B CYS 178 1_555 E ZN ZN . B ZN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7DPD 
_atom_sites.fract_transf_matrix[1][1]    0.012774 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011641 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008968 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 300 300 ZN ZN . 
D 3 NA A 1 301 301 NA NA . 
E 2 ZN B 1 300 300 ZN ZN . 
F 4 HOH A 1 401 109 HOH HOH . 
F 4 HOH A 2 402 118 HOH HOH . 
F 4 HOH A 3 403 78 HOH HOH . 
F 4 HOH A 4 404 241 HOH HOH . 
F 4 HOH A 5 405 132 HOH HOH . 
F 4 HOH A 6 406 57 HOH HOH . 
F 4 HOH A 7 407 45 HOH HOH . 
F 4 HOH A 8 408 198 HOH HOH . 
F 4 HOH A 9 409 69 HOH HOH . 
F 4 HOH A 10 410 11 HOH HOH . 
F 4 HOH A 11 411 224 HOH HOH . 
F 4 HOH A 12 412 27 HOH HOH . 
F 4 HOH A 13 413 7 HOH HOH . 
F 4 HOH A 14 414 24 HOH HOH . 
F 4 HOH A 15 415 261 HOH HOH . 
F 4 HOH A 16 416 107 HOH HOH . 
F 4 HOH A 17 417 126 HOH HOH . 
F 4 HOH A 18 418 42 HOH HOH . 
F 4 HOH A 19 419 65 HOH HOH . 
F 4 HOH A 20 420 20 HOH HOH . 
F 4 HOH A 21 421 75 HOH HOH . 
F 4 HOH A 22 422 98 HOH HOH . 
F 4 HOH A 23 423 8 HOH HOH . 
F 4 HOH A 24 424 39 HOH HOH . 
F 4 HOH A 25 425 119 HOH HOH . 
F 4 HOH A 26 426 204 HOH HOH . 
F 4 HOH A 27 427 134 HOH HOH . 
F 4 HOH A 28 428 105 HOH HOH . 
F 4 HOH A 29 429 262 HOH HOH . 
F 4 HOH A 30 430 34 HOH HOH . 
F 4 HOH A 31 431 16 HOH HOH . 
F 4 HOH A 32 432 89 HOH HOH . 
F 4 HOH A 33 433 81 HOH HOH . 
F 4 HOH A 34 434 177 HOH HOH . 
F 4 HOH A 35 435 129 HOH HOH . 
F 4 HOH A 36 436 186 HOH HOH . 
F 4 HOH A 37 437 121 HOH HOH . 
F 4 HOH A 38 438 104 HOH HOH . 
F 4 HOH A 39 439 77 HOH HOH . 
F 4 HOH A 40 440 21 HOH HOH . 
F 4 HOH A 41 441 61 HOH HOH . 
F 4 HOH A 42 442 219 HOH HOH . 
F 4 HOH A 43 443 102 HOH HOH . 
F 4 HOH A 44 444 19 HOH HOH . 
F 4 HOH A 45 445 23 HOH HOH . 
F 4 HOH A 46 446 128 HOH HOH . 
F 4 HOH A 47 447 79 HOH HOH . 
F 4 HOH A 48 448 127 HOH HOH . 
F 4 HOH A 49 449 120 HOH HOH . 
F 4 HOH A 50 450 123 HOH HOH . 
F 4 HOH A 51 451 115 HOH HOH . 
F 4 HOH A 52 452 185 HOH HOH . 
F 4 HOH A 53 453 103 HOH HOH . 
F 4 HOH A 54 454 233 HOH HOH . 
F 4 HOH A 55 455 216 HOH HOH . 
F 4 HOH A 56 456 116 HOH HOH . 
F 4 HOH A 57 457 182 HOH HOH . 
F 4 HOH A 58 458 205 HOH HOH . 
F 4 HOH A 59 459 264 HOH HOH . 
F 4 HOH A 60 460 15 HOH HOH . 
F 4 HOH A 61 461 178 HOH HOH . 
F 4 HOH A 62 462 58 HOH HOH . 
F 4 HOH A 63 463 260 HOH HOH . 
F 4 HOH A 64 464 199 HOH HOH . 
F 4 HOH A 65 465 168 HOH HOH . 
F 4 HOH A 66 466 268 HOH HOH . 
F 4 HOH A 67 467 234 HOH HOH . 
F 4 HOH A 68 468 266 HOH HOH . 
F 4 HOH A 69 469 112 HOH HOH . 
F 4 HOH A 70 470 187 HOH HOH . 
F 4 HOH A 71 471 111 HOH HOH . 
F 4 HOH A 72 472 223 HOH HOH . 
F 4 HOH A 73 473 203 HOH HOH . 
F 4 HOH A 74 474 184 HOH HOH . 
F 4 HOH A 75 475 99 HOH HOH . 
F 4 HOH A 76 476 242 HOH HOH . 
F 4 HOH A 77 477 202 HOH HOH . 
F 4 HOH A 78 478 169 HOH HOH . 
F 4 HOH A 79 479 225 HOH HOH . 
F 4 HOH A 80 480 53 HOH HOH . 
F 4 HOH A 81 481 117 HOH HOH . 
F 4 HOH A 82 482 110 HOH HOH . 
F 4 HOH A 83 483 207 HOH HOH . 
F 4 HOH A 84 484 122 HOH HOH . 
F 4 HOH A 85 485 108 HOH HOH . 
F 4 HOH A 86 486 197 HOH HOH . 
F 4 HOH A 87 487 170 HOH HOH . 
F 4 HOH A 88 488 222 HOH HOH . 
F 4 HOH A 89 489 254 HOH HOH . 
F 4 HOH A 90 490 37 HOH HOH . 
F 4 HOH A 91 491 113 HOH HOH . 
F 4 HOH A 92 492 183 HOH HOH . 
F 4 HOH A 93 493 252 HOH HOH . 
F 4 HOH A 94 494 232 HOH HOH . 
F 4 HOH A 95 495 200 HOH HOH . 
F 4 HOH A 96 496 220 HOH HOH . 
F 4 HOH A 97 497 217 HOH HOH . 
G 4 HOH B 1 401 240 HOH HOH . 
G 4 HOH B 2 402 26 HOH HOH . 
G 4 HOH B 3 403 36 HOH HOH . 
G 4 HOH B 4 404 227 HOH HOH . 
G 4 HOH B 5 405 265 HOH HOH . 
G 4 HOH B 6 406 12 HOH HOH . 
G 4 HOH B 7 407 238 HOH HOH . 
G 4 HOH B 8 408 226 HOH HOH . 
G 4 HOH B 9 409 151 HOH HOH . 
G 4 HOH B 10 410 2 HOH HOH . 
G 4 HOH B 11 411 4 HOH HOH . 
G 4 HOH B 12 412 22 HOH HOH . 
G 4 HOH B 13 413 88 HOH HOH . 
G 4 HOH B 14 414 41 HOH HOH . 
G 4 HOH B 15 415 160 HOH HOH . 
G 4 HOH B 16 416 13 HOH HOH . 
G 4 HOH B 17 417 175 HOH HOH . 
G 4 HOH B 18 418 76 HOH HOH . 
G 4 HOH B 19 419 250 HOH HOH . 
G 4 HOH B 20 420 63 HOH HOH . 
G 4 HOH B 21 421 64 HOH HOH . 
G 4 HOH B 22 422 136 HOH HOH . 
G 4 HOH B 23 423 6 HOH HOH . 
G 4 HOH B 24 424 142 HOH HOH . 
G 4 HOH B 25 425 247 HOH HOH . 
G 4 HOH B 26 426 155 HOH HOH . 
G 4 HOH B 27 427 149 HOH HOH . 
G 4 HOH B 28 428 43 HOH HOH . 
G 4 HOH B 29 429 214 HOH HOH . 
G 4 HOH B 30 430 10 HOH HOH . 
G 4 HOH B 31 431 62 HOH HOH . 
G 4 HOH B 32 432 46 HOH HOH . 
G 4 HOH B 33 433 263 HOH HOH . 
G 4 HOH B 34 434 18 HOH HOH . 
G 4 HOH B 35 435 209 HOH HOH . 
G 4 HOH B 36 436 228 HOH HOH . 
G 4 HOH B 37 437 179 HOH HOH . 
G 4 HOH B 38 438 93 HOH HOH . 
G 4 HOH B 39 439 96 HOH HOH . 
G 4 HOH B 40 440 213 HOH HOH . 
G 4 HOH B 41 441 5 HOH HOH . 
G 4 HOH B 42 442 255 HOH HOH . 
G 4 HOH B 43 443 270 HOH HOH . 
G 4 HOH B 44 444 248 HOH HOH . 
G 4 HOH B 45 445 237 HOH HOH . 
G 4 HOH B 46 446 17 HOH HOH . 
G 4 HOH B 47 447 193 HOH HOH . 
G 4 HOH B 48 448 157 HOH HOH . 
G 4 HOH B 49 449 211 HOH HOH . 
G 4 HOH B 50 450 173 HOH HOH . 
G 4 HOH B 51 451 35 HOH HOH . 
G 4 HOH B 52 452 212 HOH HOH . 
G 4 HOH B 53 453 137 HOH HOH . 
G 4 HOH B 54 454 97 HOH HOH . 
G 4 HOH B 55 455 152 HOH HOH . 
G 4 HOH B 56 456 74 HOH HOH . 
G 4 HOH B 57 457 148 HOH HOH . 
G 4 HOH B 58 458 32 HOH HOH . 
G 4 HOH B 59 459 172 HOH HOH . 
G 4 HOH B 60 460 249 HOH HOH . 
G 4 HOH B 61 461 159 HOH HOH . 
G 4 HOH B 62 462 92 HOH HOH . 
G 4 HOH B 63 463 162 HOH HOH . 
G 4 HOH B 64 464 139 HOH HOH . 
G 4 HOH B 65 465 156 HOH HOH . 
G 4 HOH B 66 466 154 HOH HOH . 
G 4 HOH B 67 467 174 HOH HOH . 
G 4 HOH B 68 468 194 HOH HOH . 
G 4 HOH B 69 469 181 HOH HOH . 
G 4 HOH B 70 470 125 HOH HOH . 
G 4 HOH B 71 471 165 HOH HOH . 
G 4 HOH B 72 472 80 HOH HOH . 
G 4 HOH B 73 473 236 HOH HOH . 
G 4 HOH B 74 474 146 HOH HOH . 
G 4 HOH B 75 475 243 HOH HOH . 
G 4 HOH B 76 476 138 HOH HOH . 
G 4 HOH B 77 477 180 HOH HOH . 
G 4 HOH B 78 478 210 HOH HOH . 
G 4 HOH B 79 479 191 HOH HOH . 
G 4 HOH B 80 480 251 HOH HOH . 
G 4 HOH B 81 481 267 HOH HOH . 
G 4 HOH B 82 482 229 HOH HOH . 
G 4 HOH B 83 483 201 HOH HOH . 
G 4 HOH B 84 484 25 HOH HOH . 
G 4 HOH B 85 485 176 HOH HOH . 
G 4 HOH B 86 486 150 HOH HOH . 
G 4 HOH B 87 487 163 HOH HOH . 
G 4 HOH B 88 488 259 HOH HOH . 
G 4 HOH B 89 489 144 HOH HOH . 
G 4 HOH B 90 490 72 HOH HOH . 
G 4 HOH B 91 491 140 HOH HOH . 
G 4 HOH B 92 492 38 HOH HOH . 
G 4 HOH B 93 493 143 HOH HOH . 
G 4 HOH B 94 494 189 HOH HOH . 
G 4 HOH B 95 495 90 HOH HOH . 
G 4 HOH B 96 496 246 HOH HOH . 
G 4 HOH B 97 497 145 HOH HOH . 
G 4 HOH B 98 498 235 HOH HOH . 
G 4 HOH B 99 499 245 HOH HOH . 
G 4 HOH B 100 500 256 HOH HOH . 
G 4 HOH B 101 501 230 HOH HOH . 
G 4 HOH B 102 502 192 HOH HOH . 
G 4 HOH B 103 503 166 HOH HOH . 
G 4 HOH B 104 504 153 HOH HOH . 
G 4 HOH B 105 505 73 HOH HOH . 
G 4 HOH B 106 506 28 HOH HOH . 
G 4 HOH B 107 507 208 HOH HOH . 
G 4 HOH B 108 508 244 HOH HOH . 
G 4 HOH B 109 509 100 HOH HOH . 
G 4 HOH B 110 510 269 HOH HOH . 
G 4 HOH B 111 511 206 HOH HOH . 
G 4 HOH B 112 512 135 HOH HOH . 
G 4 HOH B 113 513 66 HOH HOH . 
G 4 HOH B 114 514 239 HOH HOH . 
G 4 HOH B 115 515 188 HOH HOH . 
G 4 HOH B 116 516 3 HOH HOH . 
G 4 HOH B 117 517 231 HOH HOH . 
G 4 HOH B 118 518 101 HOH HOH . 
G 4 HOH B 119 519 67 HOH HOH . 
G 4 HOH B 120 520 161 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               17.533 
_atom_site.Cartn_y               12.874 
_atom_site.Cartn_z               -13.93 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        142.98 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           300 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#