data_7DPK # _model_server_result.job_id 5mmzPWaMpBxmeCXUyEtJvg _model_server_result.datetime_utc '2024-11-15 15:22:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7DPK # _exptl.entry_id 7DPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DPK _cell.length_a 119.027 _cell.length_b 119.027 _cell.length_c 38.919 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 56 A HIS 80 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 A SG CYS 86 A CYS 110 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc3 A SG CYS 89 A CYS 113 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc4 C O2 4UO . A 4UO 201 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 B ND1 HIS 56 D HIS 80 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc6 B SG CYS 86 D CYS 110 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc7 B SG CYS 89 D CYS 113 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DPK _atom_sites.fract_transf_matrix[1][1] 0.008401 _atom_sites.fract_transf_matrix[1][2] 0.004851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025694 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4UO A 1 201 201 4UO 4UO . D 3 ZN A 1 202 2 ZN ZN . E 3 ZN D 1 201 1 ZN ZN . F 4 HOH A 1 301 1 HOH HOH . F 4 HOH A 2 302 164 HOH HOH . F 4 HOH A 3 303 61 HOH HOH . F 4 HOH A 4 304 188 HOH HOH . F 4 HOH A 5 305 55 HOH HOH . F 4 HOH A 6 306 79 HOH HOH . F 4 HOH A 7 307 112 HOH HOH . F 4 HOH A 8 308 40 HOH HOH . F 4 HOH A 9 309 166 HOH HOH . F 4 HOH A 10 310 7 HOH HOH . F 4 HOH A 11 311 53 HOH HOH . F 4 HOH A 12 312 23 HOH HOH . F 4 HOH A 13 313 4 HOH HOH . F 4 HOH A 14 314 43 HOH HOH . F 4 HOH A 15 315 27 HOH HOH . F 4 HOH A 16 316 186 HOH HOH . F 4 HOH A 17 317 11 HOH HOH . F 4 HOH A 18 318 149 HOH HOH . F 4 HOH A 19 319 34 HOH HOH . F 4 HOH A 20 320 178 HOH HOH . F 4 HOH A 21 321 113 HOH HOH . F 4 HOH A 22 322 111 HOH HOH . F 4 HOH A 23 323 106 HOH HOH . F 4 HOH A 24 324 63 HOH HOH . F 4 HOH A 25 325 62 HOH HOH . F 4 HOH A 26 326 10 HOH HOH . F 4 HOH A 27 327 15 HOH HOH . F 4 HOH A 28 328 130 HOH HOH . F 4 HOH A 29 329 88 HOH HOH . F 4 HOH A 30 330 48 HOH HOH . F 4 HOH A 31 331 81 HOH HOH . F 4 HOH A 32 332 56 HOH HOH . F 4 HOH A 33 333 51 HOH HOH . F 4 HOH A 34 334 50 HOH HOH . F 4 HOH A 35 335 12 HOH HOH . F 4 HOH A 36 336 52 HOH HOH . F 4 HOH A 37 337 89 HOH HOH . F 4 HOH A 38 338 68 HOH HOH . F 4 HOH A 39 339 14 HOH HOH . F 4 HOH A 40 340 33 HOH HOH . F 4 HOH A 41 341 70 HOH HOH . F 4 HOH A 42 342 122 HOH HOH . F 4 HOH A 43 343 83 HOH HOH . F 4 HOH A 44 344 147 HOH HOH . F 4 HOH A 45 345 31 HOH HOH . F 4 HOH A 46 346 9 HOH HOH . F 4 HOH A 47 347 24 HOH HOH . F 4 HOH A 48 348 169 HOH HOH . F 4 HOH A 49 349 16 HOH HOH . F 4 HOH A 50 350 139 HOH HOH . F 4 HOH A 51 351 142 HOH HOH . F 4 HOH A 52 352 66 HOH HOH . F 4 HOH A 53 353 126 HOH HOH . F 4 HOH A 54 354 146 HOH HOH . F 4 HOH A 55 355 20 HOH HOH . F 4 HOH A 56 356 82 HOH HOH . F 4 HOH A 57 357 157 HOH HOH . F 4 HOH A 58 358 35 HOH HOH . F 4 HOH A 59 359 76 HOH HOH . F 4 HOH A 60 360 73 HOH HOH . F 4 HOH A 61 361 117 HOH HOH . F 4 HOH A 62 362 45 HOH HOH . F 4 HOH A 63 363 17 HOH HOH . F 4 HOH A 64 364 84 HOH HOH . F 4 HOH A 65 365 78 HOH HOH . F 4 HOH A 66 366 170 HOH HOH . F 4 HOH A 67 367 141 HOH HOH . F 4 HOH A 68 368 30 HOH HOH . F 4 HOH A 69 369 29 HOH HOH . F 4 HOH A 70 370 109 HOH HOH . F 4 HOH A 71 371 136 HOH HOH . F 4 HOH A 72 372 98 HOH HOH . F 4 HOH A 73 373 114 HOH HOH . F 4 HOH A 74 374 120 HOH HOH . F 4 HOH A 75 375 185 HOH HOH . F 4 HOH A 76 376 104 HOH HOH . F 4 HOH A 77 377 77 HOH HOH . F 4 HOH A 78 378 145 HOH HOH . F 4 HOH A 79 379 177 HOH HOH . F 4 HOH A 80 380 123 HOH HOH . F 4 HOH A 81 381 172 HOH HOH . F 4 HOH A 82 382 108 HOH HOH . F 4 HOH A 83 383 150 HOH HOH . F 4 HOH A 84 384 67 HOH HOH . F 4 HOH A 85 385 134 HOH HOH . F 4 HOH A 86 386 72 HOH HOH . F 4 HOH A 87 387 92 HOH HOH . G 4 HOH D 1 301 158 HOH HOH . G 4 HOH D 2 302 171 HOH HOH . G 4 HOH D 3 303 187 HOH HOH . G 4 HOH D 4 304 179 HOH HOH . G 4 HOH D 5 305 42 HOH HOH . G 4 HOH D 6 306 115 HOH HOH . G 4 HOH D 7 307 105 HOH HOH . G 4 HOH D 8 308 71 HOH HOH . G 4 HOH D 9 309 175 HOH HOH . G 4 HOH D 10 310 160 HOH HOH . G 4 HOH D 11 311 182 HOH HOH . G 4 HOH D 12 312 2 HOH HOH . G 4 HOH D 13 313 21 HOH HOH . G 4 HOH D 14 314 137 HOH HOH . G 4 HOH D 15 315 118 HOH HOH . G 4 HOH D 16 316 6 HOH HOH . G 4 HOH D 17 317 25 HOH HOH . G 4 HOH D 18 318 5 HOH HOH . G 4 HOH D 19 319 44 HOH HOH . G 4 HOH D 20 320 128 HOH HOH . G 4 HOH D 21 321 99 HOH HOH . G 4 HOH D 22 322 49 HOH HOH . G 4 HOH D 23 323 173 HOH HOH . G 4 HOH D 24 324 13 HOH HOH . G 4 HOH D 25 325 64 HOH HOH . G 4 HOH D 26 326 38 HOH HOH . G 4 HOH D 27 327 39 HOH HOH . G 4 HOH D 28 328 127 HOH HOH . G 4 HOH D 29 329 181 HOH HOH . G 4 HOH D 30 330 168 HOH HOH . G 4 HOH D 31 331 91 HOH HOH . G 4 HOH D 32 332 22 HOH HOH . G 4 HOH D 33 333 132 HOH HOH . G 4 HOH D 34 334 85 HOH HOH . G 4 HOH D 35 335 97 HOH HOH . G 4 HOH D 36 336 65 HOH HOH . G 4 HOH D 37 337 90 HOH HOH . G 4 HOH D 38 338 87 HOH HOH . G 4 HOH D 39 339 8 HOH HOH . G 4 HOH D 40 340 46 HOH HOH . G 4 HOH D 41 341 152 HOH HOH . G 4 HOH D 42 342 18 HOH HOH . G 4 HOH D 43 343 57 HOH HOH . G 4 HOH D 44 344 80 HOH HOH . G 4 HOH D 45 345 159 HOH HOH . G 4 HOH D 46 346 138 HOH HOH . G 4 HOH D 47 347 3 HOH HOH . G 4 HOH D 48 348 37 HOH HOH . G 4 HOH D 49 349 116 HOH HOH . G 4 HOH D 50 350 135 HOH HOH . G 4 HOH D 51 351 41 HOH HOH . G 4 HOH D 52 352 124 HOH HOH . G 4 HOH D 53 353 183 HOH HOH . G 4 HOH D 54 354 32 HOH HOH . G 4 HOH D 55 355 36 HOH HOH . G 4 HOH D 56 356 94 HOH HOH . G 4 HOH D 57 357 133 HOH HOH . G 4 HOH D 58 358 121 HOH HOH . G 4 HOH D 59 359 165 HOH HOH . G 4 HOH D 60 360 47 HOH HOH . G 4 HOH D 61 361 60 HOH HOH . G 4 HOH D 62 362 95 HOH HOH . G 4 HOH D 63 363 96 HOH HOH . G 4 HOH D 64 364 103 HOH HOH . G 4 HOH D 65 365 151 HOH HOH . G 4 HOH D 66 366 19 HOH HOH . G 4 HOH D 67 367 54 HOH HOH . G 4 HOH D 68 368 75 HOH HOH . G 4 HOH D 69 369 110 HOH HOH . G 4 HOH D 70 370 154 HOH HOH . G 4 HOH D 71 371 26 HOH HOH . G 4 HOH D 72 372 74 HOH HOH . G 4 HOH D 73 373 140 HOH HOH . G 4 HOH D 74 374 86 HOH HOH . G 4 HOH D 75 375 129 HOH HOH . G 4 HOH D 76 376 125 HOH HOH . G 4 HOH D 77 377 189 HOH HOH . G 4 HOH D 78 378 101 HOH HOH . G 4 HOH D 79 379 93 HOH HOH . G 4 HOH D 80 380 155 HOH HOH . G 4 HOH D 81 381 143 HOH HOH . G 4 HOH D 82 382 102 HOH HOH . G 4 HOH D 83 383 107 HOH HOH . G 4 HOH D 84 384 184 HOH HOH . G 4 HOH D 85 385 180 HOH HOH . G 4 HOH D 86 386 153 HOH HOH . G 4 HOH D 87 387 131 HOH HOH . G 4 HOH D 88 388 144 HOH HOH . G 4 HOH D 89 389 176 HOH HOH . G 4 HOH D 90 390 119 HOH HOH . G 4 HOH D 91 391 59 HOH HOH . G 4 HOH D 92 392 156 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x 18.577 _atom_site.Cartn_y 36.34 _atom_site.Cartn_z 2.299 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #