data_7DPS # _model_server_result.job_id LhWVCQd3UoaxLtkkgwF3xQ _model_server_result.datetime_utc '2024-11-24 21:05:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dps # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DPS # _exptl.entry_id 7DPS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DPS _cell.length_a 60.862 _cell.length_b 67.568 _cell.length_c 102.648 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DPS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 7DPS _atom_sites.fract_transf_matrix[1][1] 0.016431 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009742 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX7 A 1 301 3 AX7 M68 . D 3 HF6 A 1 302 2 HF6 A62 . E 4 PO4 A 1 303 2 PO4 PO4 . F 3 HF6 B 1 301 1 HF6 A62 . G 4 PO4 B 1 302 1 PO4 PO4 . H 5 HOH A 1 401 32 HOH HOH . H 5 HOH A 2 402 40 HOH HOH . H 5 HOH A 3 403 43 HOH HOH . H 5 HOH A 4 404 14 HOH HOH . H 5 HOH A 5 405 25 HOH HOH . H 5 HOH A 6 406 6 HOH HOH . H 5 HOH A 7 407 35 HOH HOH . H 5 HOH A 8 408 4 HOH HOH . H 5 HOH A 9 409 19 HOH HOH . H 5 HOH A 10 410 113 HOH HOH . H 5 HOH A 11 411 31 HOH HOH . H 5 HOH A 12 412 90 HOH HOH . H 5 HOH A 13 413 18 HOH HOH . H 5 HOH A 14 414 12 HOH HOH . H 5 HOH A 15 415 44 HOH HOH . H 5 HOH A 16 416 42 HOH HOH . H 5 HOH A 17 417 34 HOH HOH . H 5 HOH A 18 418 37 HOH HOH . H 5 HOH A 19 419 38 HOH HOH . H 5 HOH A 20 420 23 HOH HOH . H 5 HOH A 21 421 49 HOH HOH . H 5 HOH A 22 422 21 HOH HOH . H 5 HOH A 23 423 22 HOH HOH . H 5 HOH A 24 424 7 HOH HOH . H 5 HOH A 25 425 112 HOH HOH . H 5 HOH A 26 426 93 HOH HOH . H 5 HOH A 27 427 26 HOH HOH . H 5 HOH A 28 428 55 HOH HOH . H 5 HOH A 29 429 56 HOH HOH . H 5 HOH A 30 430 95 HOH HOH . H 5 HOH A 31 431 29 HOH HOH . H 5 HOH A 32 432 100 HOH HOH . H 5 HOH A 33 433 48 HOH HOH . H 5 HOH A 34 434 117 HOH HOH . H 5 HOH A 35 435 46 HOH HOH . H 5 HOH A 36 436 36 HOH HOH . H 5 HOH A 37 437 114 HOH HOH . H 5 HOH A 38 438 98 HOH HOH . H 5 HOH A 39 439 92 HOH HOH . H 5 HOH A 40 440 118 HOH HOH . H 5 HOH A 41 441 50 HOH HOH . H 5 HOH A 42 442 96 HOH HOH . H 5 HOH A 43 443 116 HOH HOH . H 5 HOH A 44 444 91 HOH HOH . H 5 HOH A 45 445 47 HOH HOH . H 5 HOH A 46 446 101 HOH HOH . H 5 HOH A 47 447 41 HOH HOH . H 5 HOH A 48 448 83 HOH HOH . H 5 HOH A 49 449 94 HOH HOH . H 5 HOH A 50 450 39 HOH HOH . H 5 HOH A 51 451 51 HOH HOH . H 5 HOH A 52 452 54 HOH HOH . H 5 HOH A 53 453 97 HOH HOH . H 5 HOH A 54 454 52 HOH HOH . I 5 HOH B 1 401 103 HOH HOH . I 5 HOH B 2 402 81 HOH HOH . I 5 HOH B 3 403 24 HOH HOH . I 5 HOH B 4 404 28 HOH HOH . I 5 HOH B 5 405 77 HOH HOH . I 5 HOH B 6 406 30 HOH HOH . I 5 HOH B 7 407 63 HOH HOH . I 5 HOH B 8 408 5 HOH HOH . I 5 HOH B 9 409 80 HOH HOH . I 5 HOH B 10 410 13 HOH HOH . I 5 HOH B 11 411 65 HOH HOH . I 5 HOH B 12 412 45 HOH HOH . I 5 HOH B 13 413 75 HOH HOH . I 5 HOH B 14 414 9 HOH HOH . I 5 HOH B 15 415 76 HOH HOH . I 5 HOH B 16 416 73 HOH HOH . I 5 HOH B 17 417 20 HOH HOH . I 5 HOH B 18 418 68 HOH HOH . I 5 HOH B 19 419 58 HOH HOH . I 5 HOH B 20 420 64 HOH HOH . I 5 HOH B 21 421 69 HOH HOH . I 5 HOH B 22 422 10 HOH HOH . I 5 HOH B 23 423 57 HOH HOH . I 5 HOH B 24 424 27 HOH HOH . I 5 HOH B 25 425 8 HOH HOH . I 5 HOH B 26 426 59 HOH HOH . I 5 HOH B 27 427 60 HOH HOH . I 5 HOH B 28 428 11 HOH HOH . I 5 HOH B 29 429 2 HOH HOH . I 5 HOH B 30 430 108 HOH HOH . I 5 HOH B 31 431 120 HOH HOH . I 5 HOH B 32 432 15 HOH HOH . I 5 HOH B 33 433 109 HOH HOH . I 5 HOH B 34 434 82 HOH HOH . I 5 HOH B 35 435 17 HOH HOH . I 5 HOH B 36 436 3 HOH HOH . I 5 HOH B 37 437 66 HOH HOH . I 5 HOH B 38 438 86 HOH HOH . I 5 HOH B 39 439 16 HOH HOH . I 5 HOH B 40 440 87 HOH HOH . I 5 HOH B 41 441 84 HOH HOH . I 5 HOH B 42 442 99 HOH HOH . I 5 HOH B 43 443 33 HOH HOH . I 5 HOH B 44 444 72 HOH HOH . I 5 HOH B 45 445 79 HOH HOH . I 5 HOH B 46 446 74 HOH HOH . I 5 HOH B 47 447 111 HOH HOH . I 5 HOH B 48 448 105 HOH HOH . I 5 HOH B 49 449 123 HOH HOH . I 5 HOH B 50 450 67 HOH HOH . I 5 HOH B 51 451 121 HOH HOH . I 5 HOH B 52 452 88 HOH HOH . I 5 HOH B 53 453 110 HOH HOH . I 5 HOH B 54 454 70 HOH HOH . I 5 HOH B 55 455 78 HOH HOH . I 5 HOH B 56 456 122 HOH HOH . I 5 HOH B 57 457 89 HOH HOH . I 5 HOH B 58 458 104 HOH HOH . I 5 HOH B 59 459 106 HOH HOH . I 5 HOH B 60 460 85 HOH HOH . I 5 HOH B 61 461 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . C 2 15.713 1.97 12.568 1 36.78 ? NAF AX7 301 A 1 HETATM 2 C CAI AX7 . . . C 2 16.564 0.93 12.946 1 34.03 ? CAI AX7 301 A 1 HETATM 3 C CAD AX7 . . . C 2 17.555 0.269 12.23 1 34.58 ? CAD AX7 301 A 1 HETATM 4 C CAB AX7 . . . C 2 18.293 -0.72 12.871 1 33.45 ? CAB AX7 301 A 1 HETATM 5 C CAC AX7 . . . C 2 18.048 -1.049 14.184 1 33.14 ? CAC AX7 301 A 1 HETATM 6 C CAE AX7 . . . C 2 17.057 -0.404 14.906 1 32.99 ? CAE AX7 301 A 1 HETATM 7 C CAJ AX7 . . . C 2 16.335 0.587 14.277 1 33.43 ? CAJ AX7 301 A 1 HETATM 8 N NAG AX7 . . . C 2 15.339 1.433 14.728 1 33.12 ? NAG AX7 301 A 1 HETATM 9 C CAH AX7 . . . C 2 15.013 2.242 13.68 1 36.35 ? CAH AX7 301 A 1 HETATM 10 N NAA AX7 . . . C 2 14.176 3.262 13.813 1 42.15 ? NAA AX7 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 10 #