data_7DQ6 # _model_server_result.job_id v8YkaoIzHks7VhUp2VAk0g _model_server_result.datetime_utc '2024-10-18 15:24:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 7DQ6 # _exptl.entry_id 7DQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(3S)-3-azanyl-3-(3-bromophenyl)propanoyl]sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQ6 _cell.length_a 67.965 _cell.length_b 96.693 _cell.length_c 166.414 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 89 A ASP 73 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 A OD2 ASP 89 A ASP 73 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A O LEU 415 A LEU 399 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 D CA CA . A CA 602 1_555 B O LEU 415 B LEU 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 B OD1 ASP 89 B ASP 73 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 B OD2 ASP 89 B ASP 73 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula 'C19 H22 Br N7 O7 S' _chem_comp.formula_weight 572.39 _chem_comp.id HFR _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(3S)-3-azanyl-3-(3-bromophenyl)propanoyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 HFR doub 129 n n N3 C11 HFR sing 130 n n C11 C10 HFR sing 131 n n C11 C12 HFR sing 132 n n S1 N4 HFR sing 133 n n S1 O3 HFR doub 134 n n S1 O4 HFR sing 135 n n C5 C6 HFR doub 136 n y C5 C10 HFR sing 137 n y N4 C13 HFR sing 138 n n C6 C7 HFR sing 139 n y C10 C9 HFR doub 140 n y O6 C16 HFR sing 141 n n C7 C8 HFR doub 142 n y C9 C8 HFR sing 143 n y C8 BR HFR sing 144 n n C14 O4 HFR sing 145 n n C14 C15 HFR sing 146 n n C12 C13 HFR sing 147 n n C13 O1 HFR doub 148 n n C16 C15 HFR sing 149 n n C16 C17 HFR sing 150 n n C15 O5 HFR sing 151 n n C17 O7 HFR sing 152 n n C17 C18 HFR sing 153 n n O5 C18 HFR sing 154 n n C4 N5 HFR sing 155 n y C4 N6 HFR doub 156 n y C18 N5 HFR sing 157 n n N5 C1 HFR sing 158 n y N6 C2 HFR sing 159 n y C2 C1 HFR doub 160 n y C2 C3 HFR sing 161 n y C1 N2 HFR sing 162 n y N7 C3 HFR sing 163 n n N2 C19 HFR doub 164 n y C3 N1 HFR doub 165 n y N1 C19 HFR sing 166 n y C4 H1 HFR sing 167 n n C14 H2 HFR sing 168 n n C14 H3 HFR sing 169 n n C5 H4 HFR sing 170 n n C6 H5 HFR sing 171 n n C11 H6 HFR sing 172 n n C7 H7 HFR sing 173 n n C9 H8 HFR sing 174 n n C12 H9 HFR sing 175 n n C12 H10 HFR sing 176 n n N3 H11 HFR sing 177 n n N3 H12 HFR sing 178 n n N4 H14 HFR sing 179 n n C15 H15 HFR sing 180 n n C16 H16 HFR sing 181 n n O6 H17 HFR sing 182 n n C17 H18 HFR sing 183 n n O7 H19 HFR sing 184 n n C18 H20 HFR sing 185 n n C19 H21 HFR sing 186 n n N7 H22 HFR sing 187 n n N7 H23 HFR sing 188 n n # _atom_sites.entry_id 7DQ6 _atom_sites.fract_transf_matrix[1][1] 0.014713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HFR A 1 601 601 HFR DRG . D 3 CA A 1 602 602 CA CA . E 2 HFR B 1 601 601 HFR DRG . F 3 CA B 1 602 602 CA CA . G 4 HOH A 1 701 47 HOH HOH . G 4 HOH A 2 702 9 HOH HOH . G 4 HOH A 3 703 62 HOH HOH . G 4 HOH A 4 704 27 HOH HOH . G 4 HOH A 5 705 57 HOH HOH . G 4 HOH A 6 706 7 HOH HOH . G 4 HOH A 7 707 41 HOH HOH . G 4 HOH A 8 708 19 HOH HOH . G 4 HOH A 9 709 28 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 21 HOH HOH . G 4 HOH A 12 712 61 HOH HOH . G 4 HOH A 13 713 1 HOH HOH . G 4 HOH A 14 714 12 HOH HOH . G 4 HOH A 15 715 43 HOH HOH . G 4 HOH A 16 716 36 HOH HOH . G 4 HOH A 17 717 55 HOH HOH . G 4 HOH A 18 718 31 HOH HOH . G 4 HOH A 19 719 56 HOH HOH . G 4 HOH A 20 720 14 HOH HOH . G 4 HOH A 21 721 4 HOH HOH . G 4 HOH A 22 722 20 HOH HOH . G 4 HOH A 23 723 40 HOH HOH . G 4 HOH A 24 724 32 HOH HOH . G 4 HOH A 25 725 2 HOH HOH . G 4 HOH A 26 726 25 HOH HOH . G 4 HOH A 27 727 48 HOH HOH . G 4 HOH A 28 728 45 HOH HOH . G 4 HOH A 29 729 44 HOH HOH . G 4 HOH A 30 730 30 HOH HOH . G 4 HOH A 31 731 11 HOH HOH . G 4 HOH A 32 732 42 HOH HOH . G 4 HOH A 33 733 17 HOH HOH . G 4 HOH A 34 734 39 HOH HOH . G 4 HOH A 35 735 50 HOH HOH . G 4 HOH A 36 736 51 HOH HOH . G 4 HOH A 37 737 49 HOH HOH . G 4 HOH A 38 738 5 HOH HOH . G 4 HOH A 39 739 58 HOH HOH . G 4 HOH A 40 740 52 HOH HOH . G 4 HOH A 41 741 15 HOH HOH . H 4 HOH B 1 701 35 HOH HOH . H 4 HOH B 2 702 22 HOH HOH . H 4 HOH B 3 703 26 HOH HOH . H 4 HOH B 4 704 18 HOH HOH . H 4 HOH B 5 705 33 HOH HOH . H 4 HOH B 6 706 24 HOH HOH . H 4 HOH B 7 707 8 HOH HOH . H 4 HOH B 8 708 23 HOH HOH . H 4 HOH B 9 709 59 HOH HOH . H 4 HOH B 10 710 13 HOH HOH . H 4 HOH B 11 711 34 HOH HOH . H 4 HOH B 12 712 29 HOH HOH . H 4 HOH B 13 713 3 HOH HOH . H 4 HOH B 14 714 46 HOH HOH . H 4 HOH B 15 715 37 HOH HOH . H 4 HOH B 16 716 38 HOH HOH . H 4 HOH B 17 717 16 HOH HOH . H 4 HOH B 18 718 60 HOH HOH . H 4 HOH B 19 719 6 HOH HOH . H 4 HOH B 20 720 53 HOH HOH . H 4 HOH B 21 721 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HFR . . . C 2 1.082 -31.07 -11.561 1 44.41 ? C4 HFR 601 A 1 HETATM 2 C C14 HFR . . . C 2 3.853 -32.027 -14.207 1 41.86 ? C14 HFR 601 A 1 HETATM 3 C C5 HFR . . . C 2 2.396 -24.66 -14.974 1 50.85 ? C5 HFR 601 A 1 HETATM 4 C C6 HFR . . . C 2 1.548 -23.569 -14.808 1 51.88 ? C6 HFR 601 A 1 HETATM 5 C C11 HFR . . . C 2 2.825 -27.135 -15.011 1 48.01 ? C11 HFR 601 A 1 HETATM 6 C C7 HFR . . . C 2 0.24 -23.776 -14.41 1 53.51 ? C7 HFR 601 A 1 HETATM 7 C C8 HFR . . . C 2 -0.223 -25.073 -14.213 1 53.44 ? C8 HFR 601 A 1 HETATM 8 C C9 HFR . . . C 2 0.608 -26.167 -14.403 1 51.76 ? C9 HFR 601 A 1 HETATM 9 C C10 HFR . . . C 2 1.923 -25.954 -14.769 1 50.05 ? C10 HFR 601 A 1 HETATM 10 C C12 HFR . . . C 2 3.799 -27.264 -13.843 1 48.68 ? C12 HFR 601 A 1 HETATM 11 C C13 HFR . . . C 2 4.569 -28.627 -13.801 1 46.93 ? C13 HFR 601 A 1 HETATM 12 N N1 HFR . . . C 2 -1.573 -31.995 -8.154 1 43.74 ? N1 HFR 601 A 1 HETATM 13 N N2 HFR . . . C 2 0.229 -33.357 -9.084 1 44.02 ? N2 HFR 601 A 1 HETATM 14 C C3 HFR . . . C 2 -1.307 -31.069 -9.081 1 44.03 ? C3 HFR 601 A 1 HETATM 15 N N3 HFR . . . C 2 3.484 -26.898 -16.286 1 46.91 ? N3 HFR 601 A 1 HETATM 16 BR BR HFR . . . C 2 -1.976 -25.357 -13.704 1 60.53 ? BR HFR 601 A 1 HETATM 17 O O1 HFR . . . C 2 4.88 -29.127 -12.719 1 47.47 ? O1 HFR 601 A 1 HETATM 18 N N4 HFR . . . C 2 4.971 -29.137 -14.974 1 43.95 ? N4 HFR 601 A 1 HETATM 19 S S1 HFR . . . C 2 5.788 -30.543 -14.987 1 41.69 ? S1 HFR 601 A 1 HETATM 20 O O2 HFR . . . C 2 5.682 -31.006 -16.453 1 40.72 ? O2 HFR 601 A 1 HETATM 21 O O3 HFR . . . C 2 7.19 -30.305 -14.487 1 40.25 ? O3 HFR 601 A 1 HETATM 22 O O4 HFR . . . C 2 5.204 -31.635 -14.058 1 41.78 ? O4 HFR 601 A 1 HETATM 23 C C15 HFR . . . C 2 3.556 -33.168 -13.243 1 42.56 ? C15 HFR 601 A 1 HETATM 24 O O5 HFR . . . C 2 3.462 -32.678 -11.876 1 42.51 ? O5 HFR 601 A 1 HETATM 25 C C16 HFR . . . C 2 2.166 -33.743 -13.564 1 42.96 ? C16 HFR 601 A 1 HETATM 26 O O6 HFR . . . C 2 2.245 -34.744 -14.571 1 43.27 ? O6 HFR 601 A 1 HETATM 27 C C17 HFR . . . C 2 1.778 -34.358 -12.181 1 42.8 ? C17 HFR 601 A 1 HETATM 28 O O7 HFR . . . C 2 2.424 -35.603 -11.961 1 41.32 ? O7 HFR 601 A 1 HETATM 29 C C18 HFR . . . C 2 2.311 -33.315 -11.232 1 42.59 ? C18 HFR 601 A 1 HETATM 30 N N5 HFR . . . C 2 1.314 -32.248 -10.952 1 43.68 ? N5 HFR 601 A 1 HETATM 31 N N6 HFR . . . C 2 0.07 -30.446 -10.939 1 44.04 ? N6 HFR 601 A 1 HETATM 32 C C2 HFR . . . C 2 -0.336 -31.24 -9.96 1 43.99 ? C2 HFR 601 A 1 HETATM 33 C C1 HFR . . . C 2 0.433 -32.355 -9.96 1 44.48 ? C1 HFR 601 A 1 HETATM 34 C C19 HFR . . . C 2 -0.8 -33.17 -8.144 1 44.72 ? C19 HFR 601 A 1 HETATM 35 N N7 HFR . . . C 2 -1.975 -29.919 -9.204 1 44.6 ? N7 HFR 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #