data_7DQ6 # _model_server_result.job_id pVpDLF8LzZuAgwaB4Y3l4w _model_server_result.datetime_utc '2024-10-18 15:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 7DQ6 # _exptl.entry_id 7DQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 572.39 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(3S)-3-azanyl-3-(3-bromophenyl)propanoyl]sulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQ6 _cell.length_a 67.965 _cell.length_b 96.693 _cell.length_c 166.414 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 89 A ASP 73 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc2 A OD2 ASP 89 A ASP 73 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc3 A O LEU 415 A LEU 399 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? metalc ? metalc4 D CA CA . A CA 602 1_555 B O LEU 415 B LEU 399 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc5 B OD1 ASP 89 B ASP 73 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc6 B OD2 ASP 89 B ASP 73 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? # _chem_comp.formula 'C19 H22 Br N7 O7 S' _chem_comp.formula_weight 572.39 _chem_comp.id HFR _chem_comp.mon_nstd_flag . _chem_comp.name '[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-[(3S)-3-azanyl-3-(3-bromophenyl)propanoyl]sulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 HFR doub 129 n n N3 C11 HFR sing 130 n n C11 C10 HFR sing 131 n n C11 C12 HFR sing 132 n n S1 N4 HFR sing 133 n n S1 O3 HFR doub 134 n n S1 O4 HFR sing 135 n n C5 C6 HFR doub 136 n y C5 C10 HFR sing 137 n y N4 C13 HFR sing 138 n n C6 C7 HFR sing 139 n y C10 C9 HFR doub 140 n y O6 C16 HFR sing 141 n n C7 C8 HFR doub 142 n y C9 C8 HFR sing 143 n y C8 BR HFR sing 144 n n C14 O4 HFR sing 145 n n C14 C15 HFR sing 146 n n C12 C13 HFR sing 147 n n C13 O1 HFR doub 148 n n C16 C15 HFR sing 149 n n C16 C17 HFR sing 150 n n C15 O5 HFR sing 151 n n C17 O7 HFR sing 152 n n C17 C18 HFR sing 153 n n O5 C18 HFR sing 154 n n C4 N5 HFR sing 155 n y C4 N6 HFR doub 156 n y C18 N5 HFR sing 157 n n N5 C1 HFR sing 158 n y N6 C2 HFR sing 159 n y C2 C1 HFR doub 160 n y C2 C3 HFR sing 161 n y C1 N2 HFR sing 162 n y N7 C3 HFR sing 163 n n N2 C19 HFR doub 164 n y C3 N1 HFR doub 165 n y N1 C19 HFR sing 166 n y C4 H1 HFR sing 167 n n C14 H2 HFR sing 168 n n C14 H3 HFR sing 169 n n C5 H4 HFR sing 170 n n C6 H5 HFR sing 171 n n C11 H6 HFR sing 172 n n C7 H7 HFR sing 173 n n C9 H8 HFR sing 174 n n C12 H9 HFR sing 175 n n C12 H10 HFR sing 176 n n N3 H11 HFR sing 177 n n N3 H12 HFR sing 178 n n N4 H14 HFR sing 179 n n C15 H15 HFR sing 180 n n C16 H16 HFR sing 181 n n O6 H17 HFR sing 182 n n C17 H18 HFR sing 183 n n O7 H19 HFR sing 184 n n C18 H20 HFR sing 185 n n C19 H21 HFR sing 186 n n N7 H22 HFR sing 187 n n N7 H23 HFR sing 188 n n # _atom_sites.entry_id 7DQ6 _atom_sites.fract_transf_matrix[1][1] 0.014713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HFR A 1 601 601 HFR DRG . D 3 CA A 1 602 602 CA CA . E 2 HFR B 1 601 601 HFR DRG . F 3 CA B 1 602 602 CA CA . G 4 HOH A 1 701 47 HOH HOH . G 4 HOH A 2 702 9 HOH HOH . G 4 HOH A 3 703 62 HOH HOH . G 4 HOH A 4 704 27 HOH HOH . G 4 HOH A 5 705 57 HOH HOH . G 4 HOH A 6 706 7 HOH HOH . G 4 HOH A 7 707 41 HOH HOH . G 4 HOH A 8 708 19 HOH HOH . G 4 HOH A 9 709 28 HOH HOH . G 4 HOH A 10 710 10 HOH HOH . G 4 HOH A 11 711 21 HOH HOH . G 4 HOH A 12 712 61 HOH HOH . G 4 HOH A 13 713 1 HOH HOH . G 4 HOH A 14 714 12 HOH HOH . G 4 HOH A 15 715 43 HOH HOH . G 4 HOH A 16 716 36 HOH HOH . G 4 HOH A 17 717 55 HOH HOH . G 4 HOH A 18 718 31 HOH HOH . G 4 HOH A 19 719 56 HOH HOH . G 4 HOH A 20 720 14 HOH HOH . G 4 HOH A 21 721 4 HOH HOH . G 4 HOH A 22 722 20 HOH HOH . G 4 HOH A 23 723 40 HOH HOH . G 4 HOH A 24 724 32 HOH HOH . G 4 HOH A 25 725 2 HOH HOH . G 4 HOH A 26 726 25 HOH HOH . G 4 HOH A 27 727 48 HOH HOH . G 4 HOH A 28 728 45 HOH HOH . G 4 HOH A 29 729 44 HOH HOH . G 4 HOH A 30 730 30 HOH HOH . G 4 HOH A 31 731 11 HOH HOH . G 4 HOH A 32 732 42 HOH HOH . G 4 HOH A 33 733 17 HOH HOH . G 4 HOH A 34 734 39 HOH HOH . G 4 HOH A 35 735 50 HOH HOH . G 4 HOH A 36 736 51 HOH HOH . G 4 HOH A 37 737 49 HOH HOH . G 4 HOH A 38 738 5 HOH HOH . G 4 HOH A 39 739 58 HOH HOH . G 4 HOH A 40 740 52 HOH HOH . G 4 HOH A 41 741 15 HOH HOH . H 4 HOH B 1 701 35 HOH HOH . H 4 HOH B 2 702 22 HOH HOH . H 4 HOH B 3 703 26 HOH HOH . H 4 HOH B 4 704 18 HOH HOH . H 4 HOH B 5 705 33 HOH HOH . H 4 HOH B 6 706 24 HOH HOH . H 4 HOH B 7 707 8 HOH HOH . H 4 HOH B 8 708 23 HOH HOH . H 4 HOH B 9 709 59 HOH HOH . H 4 HOH B 10 710 13 HOH HOH . H 4 HOH B 11 711 34 HOH HOH . H 4 HOH B 12 712 29 HOH HOH . H 4 HOH B 13 713 3 HOH HOH . H 4 HOH B 14 714 46 HOH HOH . H 4 HOH B 15 715 37 HOH HOH . H 4 HOH B 16 716 38 HOH HOH . H 4 HOH B 17 717 16 HOH HOH . H 4 HOH B 18 718 60 HOH HOH . H 4 HOH B 19 719 6 HOH HOH . H 4 HOH B 20 720 53 HOH HOH . H 4 HOH B 21 721 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HFR . . . E 2 -4.601 -25.466 -56.89 1 56.64 ? C4 HFR 601 B 1 HETATM 2 C C14 HFR . . . E 2 -4.771 -28.932 -54.972 1 54.63 ? C14 HFR 601 B 1 HETATM 3 C C5 HFR . . . E 2 -9.928 -24.445 -52.063 1 54.71 ? C5 HFR 601 B 1 HETATM 4 C C6 HFR . . . E 2 -10.437 -23.162 -51.841 1 56.3 ? C6 HFR 601 B 1 HETATM 5 C C11 HFR . . . E 2 -8.088 -25.985 -52.724 1 53.94 ? C11 HFR 601 B 1 HETATM 6 C C7 HFR . . . E 2 -9.64 -22.043 -52.073 1 55.86 ? C7 HFR 601 B 1 HETATM 7 C C8 HFR . . . E 2 -8.334 -22.241 -52.503 1 55.81 ? C8 HFR 601 B 1 HETATM 8 C C9 HFR . . . E 2 -7.8 -23.5 -52.727 1 53.22 ? C9 HFR 601 B 1 HETATM 9 C C10 HFR . . . E 2 -8.614 -24.597 -52.505 1 53.3 ? C10 HFR 601 B 1 HETATM 10 C C12 HFR . . . E 2 -8.679 -26.421 -54.059 1 55.77 ? C12 HFR 601 B 1 HETATM 11 C C13 HFR . . . E 2 -8.024 -27.683 -54.689 1 56.47 ? C13 HFR 601 B 1 HETATM 12 N N1 HFR . . . E 2 -2.965 -22.687 -59.943 1 60.56 ? N1 HFR 601 B 1 HETATM 13 N N2 HFR . . . E 2 -2.732 -25.095 -59.751 1 59.51 ? N2 HFR 601 B 1 HETATM 14 C C3 HFR . . . E 2 -3.722 -22.713 -58.836 1 60.02 ? C3 HFR 601 B 1 HETATM 15 N N3 HFR . . . E 2 -8.436 -26.859 -51.576 1 53.94 ? N3 HFR 601 B 1 HETATM 16 BR BR HFR . . . E 2 -7.293 -20.769 -52.745 1 65.34 ? BR HFR 601 B 1 HETATM 17 O O1 HFR . . . E 2 -8.019 -27.815 -55.914 1 56.63 ? O1 HFR 601 B 1 HETATM 18 N N4 HFR . . . E 2 -7.521 -28.58 -53.812 1 56.52 ? N4 HFR 601 B 1 HETATM 19 S S1 HFR . . . E 2 -6.925 -29.98 -54.297 1 55.23 ? S1 HFR 601 B 1 HETATM 20 O O2 HFR . . . E 2 -6.394 -30.688 -53.022 1 55.13 ? O2 HFR 601 B 1 HETATM 21 O O3 HFR . . . E 2 -8.049 -30.775 -54.93 1 54.51 ? O3 HFR 601 B 1 HETATM 22 O O4 HFR . . . E 2 -5.824 -29.793 -55.293 1 54.4 ? O4 HFR 601 B 1 HETATM 23 C C15 HFR . . . E 2 -3.828 -28.989 -56.154 1 56.16 ? C15 HFR 601 B 1 HETATM 24 O O5 HFR . . . E 2 -4.492 -28.328 -57.299 1 54.34 ? O5 HFR 601 B 1 HETATM 25 C C16 HFR . . . E 2 -2.582 -28.178 -55.82 1 57.44 ? C16 HFR 601 B 1 HETATM 26 O O6 HFR . . . E 2 -1.586 -29.065 -55.328 1 56.83 ? O6 HFR 601 B 1 HETATM 27 C C17 HFR . . . E 2 -2.193 -27.679 -57.182 1 58 ? C17 HFR 601 B 1 HETATM 28 O O7 HFR . . . E 2 -1.441 -28.695 -57.83 1 60.23 ? O7 HFR 601 B 1 HETATM 29 C C18 HFR . . . E 2 -3.541 -27.447 -57.927 1 56.29 ? C18 HFR 601 B 1 HETATM 30 N N5 HFR . . . E 2 -3.874 -26.024 -57.831 1 55.16 ? N5 HFR 601 B 1 HETATM 31 N N6 HFR . . . E 2 -4.685 -24.15 -57.105 1 57.52 ? N6 HFR 601 B 1 HETATM 32 C C2 HFR . . . E 2 -3.969 -23.877 -58.191 1 59.14 ? C2 HFR 601 B 1 HETATM 33 C C1 HFR . . . E 2 -3.478 -25.052 -58.639 1 57.86 ? C1 HFR 601 B 1 HETATM 34 C C19 HFR . . . E 2 -2.445 -23.906 -60.415 1 60.4 ? C19 HFR 601 B 1 HETATM 35 N N7 HFR . . . E 2 -4.236 -21.593 -58.321 1 58.39 ? N7 HFR 601 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #