data_7DQA # _model_server_result.job_id ypNkOryTR37fsL0felctFA _model_server_result.datetime_utc '2024-11-21 10:24:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 7DQA # _exptl.entry_id 7DQA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 133 A CYS 133 1_555 A SG CYS 141 A CYS 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 344 A CYS 344 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 530 A CYS 530 1_555 A SG CYS 542 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf4 B SG CYS 4 C CYS 336 1_555 B SG CYS 29 C CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 B SG CYS 47 C CYS 379 1_555 B SG CYS 100 C CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf6 B SG CYS 59 C CYS 391 1_555 B SG CYS 193 C CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf7 B SG CYS 148 C CYS 480 1_555 B SG CYS 156 C CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 53 A ASN 53 1_555 H C1 NAG . A NAG 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 90 A ASN 90 1_555 F C1 NAG . A NAG 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 322 A ASN 322 1_555 G C1 NAG . A NAG 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 546 A ASN 546 1_555 E C1 NAG . A NAG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 11 C ASN 343 1_555 I C1 NAG . C NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? metalc ? metalc1 A NE2 HIS 374 A HIS 374 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A OE1 GLU 402 A GLU 402 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc3 A OE2 GLU 402 A GLU 402 1_555 C ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7DQA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 901 901 ZN ZN . D 4 CL A 1 902 902 CL CL . E 5 NAG A 1 903 903 NAG NAG . F 5 NAG A 1 904 904 NAG NAG . G 5 NAG A 1 905 905 NAG NAG . H 5 NAG A 1 906 906 NAG NAG . I 5 NAG C 1 601 601 NAG NAG . J 6 HOH A 1 1001 1012 HOH HOH . J 6 HOH A 2 1002 1021 HOH HOH . J 6 HOH A 3 1003 1034 HOH HOH . J 6 HOH A 4 1004 1029 HOH HOH . J 6 HOH A 5 1005 1004 HOH HOH . J 6 HOH A 6 1006 1014 HOH HOH . J 6 HOH A 7 1007 1048 HOH HOH . J 6 HOH A 8 1008 1058 HOH HOH . J 6 HOH A 9 1009 1010 HOH HOH . J 6 HOH A 10 1010 1023 HOH HOH . J 6 HOH A 11 1011 1027 HOH HOH . J 6 HOH A 12 1012 1001 HOH HOH . J 6 HOH A 13 1013 1024 HOH HOH . J 6 HOH A 14 1014 1003 HOH HOH . J 6 HOH A 15 1015 1043 HOH HOH . J 6 HOH A 16 1016 1051 HOH HOH . J 6 HOH A 17 1017 1018 HOH HOH . J 6 HOH A 18 1018 1054 HOH HOH . J 6 HOH A 19 1019 1013 HOH HOH . J 6 HOH A 20 1020 1017 HOH HOH . J 6 HOH A 21 1021 1002 HOH HOH . J 6 HOH A 22 1022 1007 HOH HOH . J 6 HOH A 23 1023 1044 HOH HOH . J 6 HOH A 24 1024 1020 HOH HOH . J 6 HOH A 25 1025 1019 HOH HOH . J 6 HOH A 26 1026 1005 HOH HOH . J 6 HOH A 27 1027 1028 HOH HOH . J 6 HOH A 28 1028 1037 HOH HOH . J 6 HOH A 29 1029 1061 HOH HOH . J 6 HOH A 30 1030 1047 HOH HOH . J 6 HOH A 31 1031 1035 HOH HOH . J 6 HOH A 32 1032 1008 HOH HOH . J 6 HOH A 33 1033 1059 HOH HOH . J 6 HOH A 34 1034 1036 HOH HOH . J 6 HOH A 35 1035 1040 HOH HOH . J 6 HOH A 36 1036 1062 HOH HOH . J 6 HOH A 37 1037 1016 HOH HOH . J 6 HOH A 38 1038 1050 HOH HOH . J 6 HOH A 39 1039 1053 HOH HOH . J 6 HOH A 40 1040 1046 HOH HOH . J 6 HOH A 41 1041 1032 HOH HOH . J 6 HOH A 42 1042 1039 HOH HOH . J 6 HOH A 43 1043 1042 HOH HOH . J 6 HOH A 44 1044 1033 HOH HOH . J 6 HOH A 45 1045 1030 HOH HOH . J 6 HOH A 46 1046 1006 HOH HOH . J 6 HOH A 47 1047 1057 HOH HOH . J 6 HOH A 48 1048 1045 HOH HOH . J 6 HOH A 49 1049 1026 HOH HOH . J 6 HOH A 50 1050 1064 HOH HOH . J 6 HOH A 51 1051 1049 HOH HOH . J 6 HOH A 52 1052 1067 HOH HOH . J 6 HOH A 53 1053 1052 HOH HOH . J 6 HOH A 54 1054 1022 HOH HOH . J 6 HOH A 55 1055 1060 HOH HOH . J 6 HOH A 56 1056 1056 HOH HOH . J 6 HOH A 57 1057 1055 HOH HOH . J 6 HOH A 58 1058 1068 HOH HOH . J 6 HOH A 59 1059 1009 HOH HOH . J 6 HOH A 60 1060 1063 HOH HOH . J 6 HOH A 61 1061 1069 HOH HOH . J 6 HOH A 62 1062 1011 HOH HOH . J 6 HOH A 63 1063 1038 HOH HOH . J 6 HOH A 64 1064 1015 HOH HOH . J 6 HOH A 65 1065 1031 HOH HOH . J 6 HOH A 66 1066 1025 HOH HOH . J 6 HOH A 67 1067 1065 HOH HOH . J 6 HOH A 68 1068 1041 HOH HOH . J 6 HOH A 69 1069 1066 HOH HOH . J 6 HOH A 70 1070 1071 HOH HOH . J 6 HOH A 71 1071 1070 HOH HOH . K 6 HOH C 1 701 703 HOH HOH . K 6 HOH C 2 702 704 HOH HOH . K 6 HOH C 3 703 702 HOH HOH . K 6 HOH C 4 704 701 HOH HOH . K 6 HOH C 5 705 707 HOH HOH . K 6 HOH C 6 706 705 HOH HOH . K 6 HOH C 7 707 708 HOH HOH . K 6 HOH C 8 708 706 HOH HOH . K 6 HOH C 9 709 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 5 94.402 73.057 37.847 1 112.7 ? C1 NAG 601 C 1 HETATM 2 C C2 NAG . . . I 5 95.798 73.405 37.331 1 112.7 ? C2 NAG 601 C 1 HETATM 3 C C3 NAG . . . I 5 95.956 74.921 37.219 1 112.7 ? C3 NAG 601 C 1 HETATM 4 C C4 NAG . . . I 5 94.829 75.518 36.388 1 112.7 ? C4 NAG 601 C 1 HETATM 5 C C5 NAG . . . I 5 93.478 75.083 36.947 1 112.7 ? C5 NAG 601 C 1 HETATM 6 C C6 NAG . . . I 5 92.315 75.537 36.096 1 112.7 ? C6 NAG 601 C 1 HETATM 7 C C7 NAG . . . I 5 98.098 72.691 37.81 1 112.7 ? C7 NAG 601 C 1 HETATM 8 C C8 NAG . . . I 5 99.027 72.113 38.833 1 112.7 ? C8 NAG 601 C 1 HETATM 9 N N2 NAG . . . I 5 96.828 72.851 38.196 1 112.7 ? N2 NAG 601 C 1 HETATM 10 O O3 NAG . . . I 5 97.21 75.234 36.624 1 112.7 ? O3 NAG 601 C 1 HETATM 11 O O4 NAG . . . I 5 94.911 76.938 36.409 1 112.7 ? O4 NAG 601 C 1 HETATM 12 O O5 NAG . . . I 5 93.415 73.652 37.002 1 112.7 ? O5 NAG 601 C 1 HETATM 13 O O6 NAG . . . I 5 92.728 75.813 34.764 1 112.7 ? O6 NAG 601 C 1 HETATM 14 O O7 NAG . . . I 5 98.48 72.998 36.685 1 112.7 ? O7 NAG 601 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #