data_7DQD # _model_server_result.job_id x0tR93CrC5BgQomzj7HAkQ _model_server_result.datetime_utc '2025-03-21 11:05:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":602}' # _entry.id 7DQD # _exptl.entry_id 7DQD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.07 _cell.angle_gamma 90 _cell.entry_id 7DQD _cell.length_a 117.57 _cell.length_b 123.38 _cell.length_c 230.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,M,N,O,P,Q,V,W,X,Y 1 1 G,H,I,J,K,L,R,S,T,U,Z,AA,BA,CA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 Q N N ? 5 S N N ? 5 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 23 1_555 E SG CYS 71 E CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 30 B CYS 23 1_555 F SG CYS 71 F CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 30 C CYS 23 1_555 D SG CYS 71 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 H SG CYS 30 J CYS 23 1_555 L SG CYS 71 N CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 I SG CYS 30 K CYS 23 1_555 J SG CYS 71 L CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc1 B OG1 THR 246 B THR 239 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 N O2G ANP . B ANP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc3 N O1B ANP . B ANP 601 1_555 O MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc4 C OG1 THR 246 C THR 239 1_555 Q MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc5 C OE2 GLU 268 C GLU 261 1_555 Q MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc6 C OE1 GLU 272 C GLU 265 1_555 Q MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 P O2G ANP . C ANP 601 1_555 Q MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc8 H OG1 THR 246 J THR 239 1_555 S MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.833 ? metalc ? metalc9 R O1G ANP . J ANP 601 1_555 S MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? metalc ? metalc10 R O1B ANP . J ANP 601 1_555 S MG MG . J MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc11 I OG1 THR 246 K THR 239 1_555 U MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc12 I OE2 GLU 268 K GLU 261 1_555 U MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? metalc ? metalc13 T O1G ANP . K ANP 601 1_555 U MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc14 T O2G ANP . K ANP 601 1_555 U MG MG . K MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DQD _atom_sites.fract_transf_matrix[1][1] 0.008506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00001 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008105 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004343 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 GOL A 1 601 1 GOL GOL . N 4 ANP B 1 601 601 ANP ANP . O 5 MG B 1 602 701 MG MG . P 4 ANP C 1 601 602 ANP ANP . Q 5 MG C 1 602 702 MG MG . R 4 ANP J 1 601 603 ANP ANP . S 5 MG J 1 602 703 MG MG . T 4 ANP K 1 601 604 ANP ANP . U 5 MG K 1 602 704 MG MG . V 6 HOH A 1 701 38 HOH HOH . W 6 HOH B 1 701 4 HOH HOH . X 6 HOH C 1 701 9 HOH HOH . Y 6 HOH E 1 501 10 HOH HOH . Z 6 HOH I 1 601 17 HOH HOH . Z 6 HOH I 2 602 40 HOH HOH . AA 6 HOH L 1 501 45 HOH HOH . BA 6 HOH M 1 501 43 HOH HOH . CA 6 HOH N 1 501 44 HOH HOH . CA 6 HOH N 2 502 30 HOH HOH . CA 6 HOH N 3 503 15 HOH HOH . CA 6 HOH N 4 504 16 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id Q _atom_site.label_entity_id 5 _atom_site.Cartn_x 21.853 _atom_site.Cartn_y -29.321 _atom_site.Cartn_z 38.046 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 602 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 91 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #