data_7DQF # _model_server_result.job_id BlCN9OmpFZfkBrhxiq39KQ _model_server_result.datetime_utc '2024-11-24 06:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DQF # _exptl.entry_id 7DQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQF _cell.length_a 61.096 _cell.length_b 68.159 _cell.length_c 102.397 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 7DQF _atom_sites.fract_transf_matrix[1][1] 0.016368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX7 A 1 301 1 AX7 M68 . D 3 HF9 A 1 302 2 HF9 B59 . E 4 PO4 A 1 303 5 PO4 PO4 . F 3 HF9 B 1 301 1 HF9 B59 . G 4 PO4 B 1 302 3 PO4 PO4 . H 5 HOH A 1 401 5 HOH HOH . H 5 HOH A 2 402 99 HOH HOH . H 5 HOH A 3 403 41 HOH HOH . H 5 HOH A 4 404 93 HOH HOH . H 5 HOH A 5 405 86 HOH HOH . H 5 HOH A 6 406 29 HOH HOH . H 5 HOH A 7 407 38 HOH HOH . H 5 HOH A 8 408 2 HOH HOH . H 5 HOH A 9 409 11 HOH HOH . H 5 HOH A 10 410 19 HOH HOH . H 5 HOH A 11 411 66 HOH HOH . H 5 HOH A 12 412 43 HOH HOH . H 5 HOH A 13 413 6 HOH HOH . H 5 HOH A 14 414 80 HOH HOH . H 5 HOH A 15 415 92 HOH HOH . H 5 HOH A 16 416 20 HOH HOH . H 5 HOH A 17 417 13 HOH HOH . H 5 HOH A 18 418 98 HOH HOH . H 5 HOH A 19 419 17 HOH HOH . H 5 HOH A 20 420 26 HOH HOH . H 5 HOH A 21 421 16 HOH HOH . H 5 HOH A 22 422 79 HOH HOH . H 5 HOH A 23 423 78 HOH HOH . H 5 HOH A 24 424 94 HOH HOH . H 5 HOH A 25 425 69 HOH HOH . H 5 HOH A 26 426 81 HOH HOH . H 5 HOH A 27 427 54 HOH HOH . H 5 HOH A 28 428 71 HOH HOH . H 5 HOH A 29 429 72 HOH HOH . H 5 HOH A 30 430 44 HOH HOH . H 5 HOH A 31 431 51 HOH HOH . H 5 HOH A 32 432 31 HOH HOH . H 5 HOH A 33 433 77 HOH HOH . H 5 HOH A 34 434 33 HOH HOH . H 5 HOH A 35 435 60 HOH HOH . H 5 HOH A 36 436 47 HOH HOH . H 5 HOH A 37 437 24 HOH HOH . H 5 HOH A 38 438 32 HOH HOH . H 5 HOH A 39 439 42 HOH HOH . H 5 HOH A 40 440 14 HOH HOH . H 5 HOH A 41 441 67 HOH HOH . H 5 HOH A 42 442 100 HOH HOH . H 5 HOH A 43 443 30 HOH HOH . H 5 HOH A 44 444 83 HOH HOH . H 5 HOH A 45 445 9 HOH HOH . H 5 HOH A 46 446 56 HOH HOH . H 5 HOH A 47 447 75 HOH HOH . H 5 HOH A 48 448 82 HOH HOH . H 5 HOH A 49 449 95 HOH HOH . I 5 HOH B 1 401 108 HOH HOH . I 5 HOH B 2 402 106 HOH HOH . I 5 HOH B 3 403 89 HOH HOH . I 5 HOH B 4 404 68 HOH HOH . I 5 HOH B 5 405 91 HOH HOH . I 5 HOH B 6 406 36 HOH HOH . I 5 HOH B 7 407 87 HOH HOH . I 5 HOH B 8 408 105 HOH HOH . I 5 HOH B 9 409 53 HOH HOH . I 5 HOH B 10 410 57 HOH HOH . I 5 HOH B 11 411 18 HOH HOH . I 5 HOH B 12 412 7 HOH HOH . I 5 HOH B 13 413 88 HOH HOH . I 5 HOH B 14 414 21 HOH HOH . I 5 HOH B 15 415 48 HOH HOH . I 5 HOH B 16 416 22 HOH HOH . I 5 HOH B 17 417 3 HOH HOH . I 5 HOH B 18 418 49 HOH HOH . I 5 HOH B 19 419 52 HOH HOH . I 5 HOH B 20 420 50 HOH HOH . I 5 HOH B 21 421 65 HOH HOH . I 5 HOH B 22 422 70 HOH HOH . I 5 HOH B 23 423 55 HOH HOH . I 5 HOH B 24 424 84 HOH HOH . I 5 HOH B 25 425 8 HOH HOH . I 5 HOH B 26 426 61 HOH HOH . I 5 HOH B 27 427 28 HOH HOH . I 5 HOH B 28 428 73 HOH HOH . I 5 HOH B 29 429 39 HOH HOH . I 5 HOH B 30 430 62 HOH HOH . I 5 HOH B 31 431 97 HOH HOH . I 5 HOH B 32 432 40 HOH HOH . I 5 HOH B 33 433 59 HOH HOH . I 5 HOH B 34 434 1 HOH HOH . I 5 HOH B 35 435 10 HOH HOH . I 5 HOH B 36 436 58 HOH HOH . I 5 HOH B 37 437 74 HOH HOH . I 5 HOH B 38 438 25 HOH HOH . I 5 HOH B 39 439 46 HOH HOH . I 5 HOH B 40 440 4 HOH HOH . I 5 HOH B 41 441 23 HOH HOH . I 5 HOH B 42 442 45 HOH HOH . I 5 HOH B 43 443 15 HOH HOH . I 5 HOH B 44 444 64 HOH HOH . I 5 HOH B 45 445 34 HOH HOH . I 5 HOH B 46 446 35 HOH HOH . I 5 HOH B 47 447 107 HOH HOH . I 5 HOH B 48 448 96 HOH HOH . I 5 HOH B 49 449 27 HOH HOH . I 5 HOH B 50 450 37 HOH HOH . I 5 HOH B 51 451 12 HOH HOH . I 5 HOH B 52 452 63 HOH HOH . I 5 HOH B 53 453 85 HOH HOH . I 5 HOH B 54 454 90 HOH HOH . I 5 HOH B 55 455 102 HOH HOH . I 5 HOH B 56 456 103 HOH HOH . I 5 HOH B 57 457 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . C 2 17.296 -0.392 14.51 1 23.17 ? NAF AX7 301 A 1 HETATM 2 C CAI AX7 . . . C 2 16.45 0.625 14.07 1 21.72 ? CAI AX7 301 A 1 HETATM 3 C CAD AX7 . . . C 2 15.429 1.3 14.738 1 21.52 ? CAD AX7 301 A 1 HETATM 4 C CAB AX7 . . . C 2 14.723 2.283 14.054 1 21.56 ? CAB AX7 301 A 1 HETATM 5 C CAC AX7 . . . C 2 15.017 2.582 12.727 1 21.76 ? CAC AX7 301 A 1 HETATM 6 C CAE AX7 . . . C 2 16.042 1.928 12.061 1 21.8 ? CAE AX7 301 A 1 HETATM 7 C CAJ AX7 . . . C 2 16.748 0.957 12.749 1 21.2 ? CAJ AX7 301 A 1 HETATM 8 N NAG AX7 . . . C 2 17.799 0.143 12.383 1 23.42 ? NAG AX7 301 A 1 HETATM 9 C CAH AX7 . . . C 2 18.088 -0.643 13.463 1 23.47 ? CAH AX7 301 A 1 HETATM 10 N NAA AX7 . . . C 2 19.063 -1.548 13.446 1 26.23 ? NAA AX7 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #