data_7DQI # _model_server_result.job_id Je3xI_Wgg9Nt06nMMh3H3g _model_server_result.datetime_utc '2024-11-24 03:50:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DQI # _exptl.entry_id 7DQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQI _cell.length_a 61.862 _cell.length_b 67.601 _cell.length_c 102.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 7DQI _atom_sites.fract_transf_matrix[1][1] 0.016165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014793 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX7 A 1 301 2 AX7 M68 . D 3 HFC A 1 302 2 HFC B76 . E 3 HFC B 1 301 3 HFC B76 . F 4 PO4 B 1 302 1 PO4 PO4 . G 4 PO4 B 1 303 2 PO4 PO4 . H 5 HOH A 1 401 111 HOH HOH . H 5 HOH A 2 402 69 HOH HOH . H 5 HOH A 3 403 48 HOH HOH . H 5 HOH A 4 404 114 HOH HOH . H 5 HOH A 5 405 56 HOH HOH . H 5 HOH A 6 406 24 HOH HOH . H 5 HOH A 7 407 67 HOH HOH . H 5 HOH A 8 408 9 HOH HOH . H 5 HOH A 9 409 46 HOH HOH . H 5 HOH A 10 410 116 HOH HOH . H 5 HOH A 11 411 39 HOH HOH . H 5 HOH A 12 412 28 HOH HOH . H 5 HOH A 13 413 32 HOH HOH . H 5 HOH A 14 414 115 HOH HOH . H 5 HOH A 15 415 35 HOH HOH . H 5 HOH A 16 416 60 HOH HOH . H 5 HOH A 17 417 63 HOH HOH . H 5 HOH A 18 418 42 HOH HOH . H 5 HOH A 19 419 14 HOH HOH . H 5 HOH A 20 420 49 HOH HOH . H 5 HOH A 21 421 68 HOH HOH . H 5 HOH A 22 422 11 HOH HOH . H 5 HOH A 23 423 74 HOH HOH . H 5 HOH A 24 424 7 HOH HOH . H 5 HOH A 25 425 75 HOH HOH . H 5 HOH A 26 426 72 HOH HOH . H 5 HOH A 27 427 6 HOH HOH . H 5 HOH A 28 428 4 HOH HOH . H 5 HOH A 29 429 83 HOH HOH . H 5 HOH A 30 430 70 HOH HOH . H 5 HOH A 31 431 38 HOH HOH . H 5 HOH A 32 432 45 HOH HOH . H 5 HOH A 33 433 57 HOH HOH . H 5 HOH A 34 434 8 HOH HOH . H 5 HOH A 35 435 27 HOH HOH . H 5 HOH A 36 436 58 HOH HOH . H 5 HOH A 37 437 13 HOH HOH . H 5 HOH A 38 438 55 HOH HOH . H 5 HOH A 39 439 51 HOH HOH . H 5 HOH A 40 440 59 HOH HOH . H 5 HOH A 41 441 139 HOH HOH . H 5 HOH A 42 442 64 HOH HOH . H 5 HOH A 43 443 65 HOH HOH . H 5 HOH A 44 444 53 HOH HOH . H 5 HOH A 45 445 73 HOH HOH . H 5 HOH A 46 446 37 HOH HOH . H 5 HOH A 47 447 41 HOH HOH . H 5 HOH A 48 448 88 HOH HOH . H 5 HOH A 49 449 66 HOH HOH . H 5 HOH A 50 450 71 HOH HOH . H 5 HOH A 51 451 47 HOH HOH . H 5 HOH A 52 452 52 HOH HOH . H 5 HOH A 53 453 84 HOH HOH . H 5 HOH A 54 454 85 HOH HOH . H 5 HOH A 55 455 142 HOH HOH . H 5 HOH A 56 456 81 HOH HOH . H 5 HOH A 57 457 135 HOH HOH . H 5 HOH A 58 458 140 HOH HOH . H 5 HOH A 59 459 50 HOH HOH . H 5 HOH A 60 460 113 HOH HOH . H 5 HOH A 61 461 54 HOH HOH . I 5 HOH B 1 401 89 HOH HOH . I 5 HOH B 2 402 78 HOH HOH . I 5 HOH B 3 403 44 HOH HOH . I 5 HOH B 4 404 23 HOH HOH . I 5 HOH B 5 405 105 HOH HOH . I 5 HOH B 6 406 121 HOH HOH . I 5 HOH B 7 407 5 HOH HOH . I 5 HOH B 8 408 17 HOH HOH . I 5 HOH B 9 409 25 HOH HOH . I 5 HOH B 10 410 77 HOH HOH . I 5 HOH B 11 411 82 HOH HOH . I 5 HOH B 12 412 33 HOH HOH . I 5 HOH B 13 413 22 HOH HOH . I 5 HOH B 14 414 86 HOH HOH . I 5 HOH B 15 415 40 HOH HOH . I 5 HOH B 16 416 3 HOH HOH . I 5 HOH B 17 417 80 HOH HOH . I 5 HOH B 18 418 122 HOH HOH . I 5 HOH B 19 419 87 HOH HOH . I 5 HOH B 20 420 102 HOH HOH . I 5 HOH B 21 421 20 HOH HOH . I 5 HOH B 22 422 26 HOH HOH . I 5 HOH B 23 423 124 HOH HOH . I 5 HOH B 24 424 100 HOH HOH . I 5 HOH B 25 425 99 HOH HOH . I 5 HOH B 26 426 106 HOH HOH . I 5 HOH B 27 427 79 HOH HOH . I 5 HOH B 28 428 137 HOH HOH . I 5 HOH B 29 429 131 HOH HOH . I 5 HOH B 30 430 112 HOH HOH . I 5 HOH B 31 431 95 HOH HOH . I 5 HOH B 32 432 136 HOH HOH . I 5 HOH B 33 433 15 HOH HOH . I 5 HOH B 34 434 97 HOH HOH . I 5 HOH B 35 435 43 HOH HOH . I 5 HOH B 36 436 93 HOH HOH . I 5 HOH B 37 437 1 HOH HOH . I 5 HOH B 38 438 10 HOH HOH . I 5 HOH B 39 439 21 HOH HOH . I 5 HOH B 40 440 19 HOH HOH . I 5 HOH B 41 441 128 HOH HOH . I 5 HOH B 42 442 98 HOH HOH . I 5 HOH B 43 443 12 HOH HOH . I 5 HOH B 44 444 118 HOH HOH . I 5 HOH B 45 445 2 HOH HOH . I 5 HOH B 46 446 61 HOH HOH . I 5 HOH B 47 447 34 HOH HOH . I 5 HOH B 48 448 29 HOH HOH . I 5 HOH B 49 449 18 HOH HOH . I 5 HOH B 50 450 36 HOH HOH . I 5 HOH B 51 451 30 HOH HOH . I 5 HOH B 52 452 16 HOH HOH . I 5 HOH B 53 453 101 HOH HOH . I 5 HOH B 54 454 91 HOH HOH . I 5 HOH B 55 455 103 HOH HOH . I 5 HOH B 56 456 125 HOH HOH . I 5 HOH B 57 457 31 HOH HOH . I 5 HOH B 58 458 138 HOH HOH . I 5 HOH B 59 459 107 HOH HOH . I 5 HOH B 60 460 94 HOH HOH . I 5 HOH B 61 461 109 HOH HOH . I 5 HOH B 62 462 120 HOH HOH . I 5 HOH B 63 463 110 HOH HOH . I 5 HOH B 64 464 108 HOH HOH . I 5 HOH B 65 465 141 HOH HOH . I 5 HOH B 66 466 90 HOH HOH . I 5 HOH B 67 467 104 HOH HOH . I 5 HOH B 68 468 127 HOH HOH . I 5 HOH B 69 469 123 HOH HOH . I 5 HOH B 70 470 126 HOH HOH . I 5 HOH B 71 471 117 HOH HOH . I 5 HOH B 72 472 92 HOH HOH . I 5 HOH B 73 473 62 HOH HOH . I 5 HOH B 74 474 96 HOH HOH . I 5 HOH B 75 475 76 HOH HOH . I 5 HOH B 76 476 134 HOH HOH . I 5 HOH B 77 477 129 HOH HOH . I 5 HOH B 78 478 119 HOH HOH . I 5 HOH B 79 479 130 HOH HOH . I 5 HOH B 80 480 132 HOH HOH . I 5 HOH B 81 481 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . C 2 17.475 -0.603 14.75 1 29.86 ? NAF AX7 301 A 1 HETATM 2 C CAI AX7 . . . C 2 16.654 0.433 14.3 1 29.89 ? CAI AX7 301 A 1 HETATM 3 C CAD AX7 . . . C 2 15.668 1.157 14.969 1 29.71 ? CAD AX7 301 A 1 HETATM 4 C CAB AX7 . . . C 2 15.003 2.169 14.288 1 29.95 ? CAB AX7 301 A 1 HETATM 5 C CAC AX7 . . . C 2 15.296 2.448 12.957 1 29.76 ? CAC AX7 301 A 1 HETATM 6 C CAE AX7 . . . C 2 16.274 1.733 12.279 1 29.8 ? CAE AX7 301 A 1 HETATM 7 C CAJ AX7 . . . C 2 16.947 0.733 12.97 1 29.86 ? CAJ AX7 301 A 1 HETATM 8 N NAG AX7 . . . C 2 17.966 -0.124 12.604 1 30.1 ? NAG AX7 301 A 1 HETATM 9 C CAH AX7 . . . C 2 18.247 -0.898 13.695 1 30.14 ? CAH AX7 301 A 1 HETATM 10 N NAA AX7 . . . C 2 19.198 -1.835 13.681 1 30.4 ? NAA AX7 301 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #