data_7DQM # _model_server_result.job_id IJaQcosaPSCQfghbflmsTA _model_server_result.datetime_utc '2024-11-22 01:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DQM # _exptl.entry_id 7DQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQM _cell.length_a 61.584 _cell.length_b 67.499 _cell.length_c 103.752 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 70 n y NAF CAH AX7 sing 71 n y CAI CAD AX7 doub 72 n y CAI CAJ AX7 sing 73 n y CAD CAB AX7 sing 74 n y CAB CAC AX7 doub 75 n y CAC CAE AX7 sing 76 n y CAE CAJ AX7 doub 77 n y CAJ NAG AX7 sing 78 n y NAG CAH AX7 doub 79 n y CAH NAA AX7 sing 80 n n NAF HNAF AX7 sing 81 n n CAD HAD AX7 sing 82 n n CAB HAB AX7 sing 83 n n CAC HAC AX7 sing 84 n n CAE HAE AX7 sing 85 n n NAA HNAA AX7 sing 86 n n NAA HNAB AX7 sing 87 n n # _atom_sites.entry_id 7DQM _atom_sites.fract_transf_matrix[1][1] 0.016238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009638 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX7 A 1 301 1 AX7 M68 . D 3 PO4 A 1 302 2 PO4 PO4 . E 4 CWE B 1 301 1 CWE 107 . F 3 PO4 B 1 302 1 PO4 PO4 . G 3 PO4 B 1 303 3 PO4 PO4 . H 5 HOH A 1 401 4 HOH HOH . H 5 HOH A 2 402 7 HOH HOH . H 5 HOH A 3 403 64 HOH HOH . H 5 HOH A 4 404 75 HOH HOH . H 5 HOH A 5 405 119 HOH HOH . H 5 HOH A 6 406 95 HOH HOH . H 5 HOH A 7 407 74 HOH HOH . H 5 HOH A 8 408 90 HOH HOH . H 5 HOH A 9 409 151 HOH HOH . H 5 HOH A 10 410 116 HOH HOH . H 5 HOH A 11 411 37 HOH HOH . H 5 HOH A 12 412 211 HOH HOH . H 5 HOH A 13 413 9 HOH HOH . H 5 HOH A 14 414 124 HOH HOH . H 5 HOH A 15 415 200 HOH HOH . H 5 HOH A 16 416 22 HOH HOH . H 5 HOH A 17 417 144 HOH HOH . H 5 HOH A 18 418 19 HOH HOH . H 5 HOH A 19 419 135 HOH HOH . H 5 HOH A 20 420 114 HOH HOH . H 5 HOH A 21 421 150 HOH HOH . H 5 HOH A 22 422 58 HOH HOH . H 5 HOH A 23 423 26 HOH HOH . H 5 HOH A 24 424 111 HOH HOH . H 5 HOH A 25 425 133 HOH HOH . H 5 HOH A 26 426 112 HOH HOH . H 5 HOH A 27 427 32 HOH HOH . H 5 HOH A 28 428 38 HOH HOH . H 5 HOH A 29 429 123 HOH HOH . H 5 HOH A 30 430 137 HOH HOH . H 5 HOH A 31 431 73 HOH HOH . H 5 HOH A 32 432 45 HOH HOH . H 5 HOH A 33 433 113 HOH HOH . H 5 HOH A 34 434 53 HOH HOH . H 5 HOH A 35 435 51 HOH HOH . H 5 HOH A 36 436 98 HOH HOH . H 5 HOH A 37 437 13 HOH HOH . H 5 HOH A 38 438 210 HOH HOH . H 5 HOH A 39 439 100 HOH HOH . H 5 HOH A 40 440 56 HOH HOH . H 5 HOH A 41 441 71 HOH HOH . H 5 HOH A 42 442 91 HOH HOH . H 5 HOH A 43 443 94 HOH HOH . H 5 HOH A 44 444 126 HOH HOH . H 5 HOH A 45 445 60 HOH HOH . H 5 HOH A 46 446 68 HOH HOH . H 5 HOH A 47 447 17 HOH HOH . H 5 HOH A 48 448 63 HOH HOH . H 5 HOH A 49 449 142 HOH HOH . H 5 HOH A 50 450 55 HOH HOH . H 5 HOH A 51 451 127 HOH HOH . H 5 HOH A 52 452 40 HOH HOH . H 5 HOH A 53 453 47 HOH HOH . H 5 HOH A 54 454 138 HOH HOH . H 5 HOH A 55 455 54 HOH HOH . H 5 HOH A 56 456 25 HOH HOH . H 5 HOH A 57 457 145 HOH HOH . H 5 HOH A 58 458 69 HOH HOH . H 5 HOH A 59 459 44 HOH HOH . H 5 HOH A 60 460 102 HOH HOH . H 5 HOH A 61 461 101 HOH HOH . H 5 HOH A 62 462 62 HOH HOH . H 5 HOH A 63 463 20 HOH HOH . H 5 HOH A 64 464 136 HOH HOH . H 5 HOH A 65 465 153 HOH HOH . H 5 HOH A 66 466 205 HOH HOH . H 5 HOH A 67 467 78 HOH HOH . H 5 HOH A 68 468 18 HOH HOH . H 5 HOH A 69 469 208 HOH HOH . H 5 HOH A 70 470 128 HOH HOH . H 5 HOH A 71 471 147 HOH HOH . H 5 HOH A 72 472 131 HOH HOH . H 5 HOH A 73 473 77 HOH HOH . H 5 HOH A 74 474 108 HOH HOH . H 5 HOH A 75 475 85 HOH HOH . H 5 HOH A 76 476 196 HOH HOH . H 5 HOH A 77 477 130 HOH HOH . H 5 HOH A 78 478 132 HOH HOH . H 5 HOH A 79 479 125 HOH HOH . H 5 HOH A 80 480 84 HOH HOH . H 5 HOH A 81 481 83 HOH HOH . H 5 HOH A 82 482 141 HOH HOH . H 5 HOH A 83 483 140 HOH HOH . H 5 HOH A 84 484 92 HOH HOH . H 5 HOH A 85 485 59 HOH HOH . H 5 HOH A 86 486 57 HOH HOH . H 5 HOH A 87 487 209 HOH HOH . H 5 HOH A 88 488 86 HOH HOH . H 5 HOH A 89 489 109 HOH HOH . I 5 HOH B 1 401 87 HOH HOH . I 5 HOH B 2 402 8 HOH HOH . I 5 HOH B 3 403 105 HOH HOH . I 5 HOH B 4 404 66 HOH HOH . I 5 HOH B 5 405 2 HOH HOH . I 5 HOH B 6 406 6 HOH HOH . I 5 HOH B 7 407 1 HOH HOH . I 5 HOH B 8 408 195 HOH HOH . I 5 HOH B 9 409 28 HOH HOH . I 5 HOH B 10 410 166 HOH HOH . I 5 HOH B 11 411 157 HOH HOH . I 5 HOH B 12 412 31 HOH HOH . I 5 HOH B 13 413 199 HOH HOH . I 5 HOH B 14 414 27 HOH HOH . I 5 HOH B 15 415 3 HOH HOH . I 5 HOH B 16 416 169 HOH HOH . I 5 HOH B 17 417 65 HOH HOH . I 5 HOH B 18 418 177 HOH HOH . I 5 HOH B 19 419 48 HOH HOH . I 5 HOH B 20 420 46 HOH HOH . I 5 HOH B 21 421 192 HOH HOH . I 5 HOH B 22 422 39 HOH HOH . I 5 HOH B 23 423 118 HOH HOH . I 5 HOH B 24 424 29 HOH HOH . I 5 HOH B 25 425 184 HOH HOH . I 5 HOH B 26 426 182 HOH HOH . I 5 HOH B 27 427 36 HOH HOH . I 5 HOH B 28 428 61 HOH HOH . I 5 HOH B 29 429 201 HOH HOH . I 5 HOH B 30 430 35 HOH HOH . I 5 HOH B 31 431 42 HOH HOH . I 5 HOH B 32 432 72 HOH HOH . I 5 HOH B 33 433 41 HOH HOH . I 5 HOH B 34 434 107 HOH HOH . I 5 HOH B 35 435 30 HOH HOH . I 5 HOH B 36 436 82 HOH HOH . I 5 HOH B 37 437 76 HOH HOH . I 5 HOH B 38 438 202 HOH HOH . I 5 HOH B 39 439 24 HOH HOH . I 5 HOH B 40 440 198 HOH HOH . I 5 HOH B 41 441 165 HOH HOH . I 5 HOH B 42 442 49 HOH HOH . I 5 HOH B 43 443 33 HOH HOH . I 5 HOH B 44 444 172 HOH HOH . I 5 HOH B 45 445 160 HOH HOH . I 5 HOH B 46 446 117 HOH HOH . I 5 HOH B 47 447 15 HOH HOH . I 5 HOH B 48 448 11 HOH HOH . I 5 HOH B 49 449 104 HOH HOH . I 5 HOH B 50 450 43 HOH HOH . I 5 HOH B 51 451 34 HOH HOH . I 5 HOH B 52 452 191 HOH HOH . I 5 HOH B 53 453 5 HOH HOH . I 5 HOH B 54 454 97 HOH HOH . I 5 HOH B 55 455 186 HOH HOH . I 5 HOH B 56 456 161 HOH HOH . I 5 HOH B 57 457 96 HOH HOH . I 5 HOH B 58 458 187 HOH HOH . I 5 HOH B 59 459 203 HOH HOH . I 5 HOH B 60 460 156 HOH HOH . I 5 HOH B 61 461 70 HOH HOH . I 5 HOH B 62 462 14 HOH HOH . I 5 HOH B 63 463 152 HOH HOH . I 5 HOH B 64 464 50 HOH HOH . I 5 HOH B 65 465 23 HOH HOH . I 5 HOH B 66 466 193 HOH HOH . I 5 HOH B 67 467 79 HOH HOH . I 5 HOH B 68 468 99 HOH HOH . I 5 HOH B 69 469 10 HOH HOH . I 5 HOH B 70 470 21 HOH HOH . I 5 HOH B 71 471 188 HOH HOH . I 5 HOH B 72 472 16 HOH HOH . I 5 HOH B 73 473 181 HOH HOH . I 5 HOH B 74 474 120 HOH HOH . I 5 HOH B 75 475 207 HOH HOH . I 5 HOH B 76 476 183 HOH HOH . I 5 HOH B 77 477 67 HOH HOH . I 5 HOH B 78 478 173 HOH HOH . I 5 HOH B 79 479 194 HOH HOH . I 5 HOH B 80 480 80 HOH HOH . I 5 HOH B 81 481 174 HOH HOH . I 5 HOH B 82 482 170 HOH HOH . I 5 HOH B 83 483 163 HOH HOH . I 5 HOH B 84 484 164 HOH HOH . I 5 HOH B 85 485 158 HOH HOH . I 5 HOH B 86 486 175 HOH HOH . I 5 HOH B 87 487 52 HOH HOH . I 5 HOH B 88 488 103 HOH HOH . I 5 HOH B 89 489 122 HOH HOH . I 5 HOH B 90 490 81 HOH HOH . I 5 HOH B 91 491 179 HOH HOH . I 5 HOH B 92 492 178 HOH HOH . I 5 HOH B 93 493 155 HOH HOH . I 5 HOH B 94 494 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . C 2 -17.921 0.034 -12.748 1 29.32 ? NAF AX7 301 A 1 HETATM 2 C CAI AX7 . . . C 2 -16.886 0.881 -13.145 1 28.92 ? CAI AX7 301 A 1 HETATM 3 C CAD AX7 . . . C 2 -16.252 1.915 -12.459 1 29.02 ? CAD AX7 301 A 1 HETATM 4 C CAB AX7 . . . C 2 -15.237 2.619 -13.094 1 29.07 ? CAB AX7 301 A 1 HETATM 5 C CAC AX7 . . . C 2 -14.857 2.305 -14.396 1 29 ? CAC AX7 301 A 1 HETATM 6 C CAE AX7 . . . C 2 -15.478 1.275 -15.09 1 28.91 ? CAE AX7 301 A 1 HETATM 7 C CAJ AX7 . . . C 2 -16.492 0.575 -14.448 1 29.05 ? CAJ AX7 301 A 1 HETATM 8 N NAG AX7 . . . C 2 -17.298 -0.473 -14.852 1 29.06 ? NAG AX7 301 A 1 HETATM 9 C CAH AX7 . . . C 2 -18.133 -0.758 -13.806 1 29.3 ? CAH AX7 301 A 1 HETATM 10 N NAA AX7 . . . C 2 -19.058 -1.718 -13.869 1 30.14 ? NAA AX7 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #