data_7DQN # _model_server_result.job_id H12qnFuf9dPvAZ6fmA2cUg _model_server_result.datetime_utc '2024-11-15 13:26:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7DQN # _exptl.entry_id 7DQN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 283.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GUANOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DQN _cell.length_a 119.171 _cell.length_b 119.171 _cell.length_c 39.476 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQN _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall 'P 61' _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 56 A HIS 80 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 A SG CYS 86 A CYS 110 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc3 A SG CYS 89 A CYS 113 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc4 B ND1 HIS 56 D HIS 80 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc5 B SG CYS 86 D CYS 110 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc6 B SG CYS 89 D CYS 113 1_555 E ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C10 H13 N5 O5' _chem_comp.formula_weight 283.241 _chem_comp.id GMP _chem_comp.mon_nstd_flag . _chem_comp.name GUANOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' GMP sing 129 n n O5' HO5' GMP sing 130 n n C5' C4' GMP sing 131 n n C5' "H5'1" GMP sing 132 n n C5' "H5'2" GMP sing 133 n n C4' O4' GMP sing 134 n n C4' C3' GMP sing 135 n n C4' H4' GMP sing 136 n n O4' C1' GMP sing 137 n n C3' O3' GMP sing 138 n n C3' C2' GMP sing 139 n n C3' H3' GMP sing 140 n n O3' HO3' GMP sing 141 n n C2' O2' GMP sing 142 n n C2' C1' GMP sing 143 n n C2' H2' GMP sing 144 n n O2' HO2' GMP sing 145 n n C1' N9 GMP sing 146 n n C1' H1' GMP sing 147 n n N9 C8 GMP sing 148 n y N9 C4 GMP sing 149 n y C8 N7 GMP doub 150 n y C8 H8 GMP sing 151 n n N7 C5 GMP sing 152 n y C5 C6 GMP sing 153 n n C5 C4 GMP doub 154 n y C6 O6 GMP doub 155 n n C6 N1 GMP sing 156 n n N1 C2 GMP sing 157 n n N1 HN1 GMP sing 158 n n C2 N2 GMP sing 159 n n C2 N3 GMP doub 160 n n N2 HN21 GMP sing 161 n n N2 HN22 GMP sing 162 n n N3 C4 GMP sing 163 n n # _atom_sites.entry_id 7DQN _atom_sites.fract_transf_matrix[1][1] 0.008391 _atom_sites.fract_transf_matrix[1][2] 0.004845 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GMP A 1 201 201 GMP GMP . D 3 ZN A 1 202 2 ZN ZN . E 3 ZN D 1 201 1 ZN ZN . F 4 HOH A 1 301 5 HOH HOH . F 4 HOH A 2 302 26 HOH HOH . F 4 HOH A 3 303 7 HOH HOH . F 4 HOH A 4 304 77 HOH HOH . F 4 HOH A 5 305 49 HOH HOH . F 4 HOH A 6 306 27 HOH HOH . F 4 HOH A 7 307 80 HOH HOH . F 4 HOH A 8 308 37 HOH HOH . F 4 HOH A 9 309 15 HOH HOH . F 4 HOH A 10 310 16 HOH HOH . F 4 HOH A 11 311 94 HOH HOH . F 4 HOH A 12 312 19 HOH HOH . F 4 HOH A 13 313 4 HOH HOH . F 4 HOH A 14 314 12 HOH HOH . F 4 HOH A 15 315 24 HOH HOH . F 4 HOH A 16 316 13 HOH HOH . F 4 HOH A 17 317 83 HOH HOH . F 4 HOH A 18 318 10 HOH HOH . F 4 HOH A 19 319 22 HOH HOH . F 4 HOH A 20 320 69 HOH HOH . F 4 HOH A 21 321 65 HOH HOH . F 4 HOH A 22 322 75 HOH HOH . F 4 HOH A 23 323 87 HOH HOH . F 4 HOH A 24 324 14 HOH HOH . F 4 HOH A 25 325 89 HOH HOH . F 4 HOH A 26 326 51 HOH HOH . F 4 HOH A 27 327 70 HOH HOH . F 4 HOH A 28 328 44 HOH HOH . F 4 HOH A 29 329 47 HOH HOH . F 4 HOH A 30 330 46 HOH HOH . F 4 HOH A 31 331 38 HOH HOH . F 4 HOH A 32 332 18 HOH HOH . F 4 HOH A 33 333 86 HOH HOH . F 4 HOH A 34 334 93 HOH HOH . F 4 HOH A 35 335 90 HOH HOH . F 4 HOH A 36 336 92 HOH HOH . F 4 HOH A 37 337 73 HOH HOH . G 4 HOH D 1 301 28 HOH HOH . G 4 HOH D 2 302 78 HOH HOH . G 4 HOH D 3 303 45 HOH HOH . G 4 HOH D 4 304 59 HOH HOH . G 4 HOH D 5 305 58 HOH HOH . G 4 HOH D 6 306 36 HOH HOH . G 4 HOH D 7 307 17 HOH HOH . G 4 HOH D 8 308 91 HOH HOH . G 4 HOH D 9 309 35 HOH HOH . G 4 HOH D 10 310 6 HOH HOH . G 4 HOH D 11 311 82 HOH HOH . G 4 HOH D 12 312 40 HOH HOH . G 4 HOH D 13 313 1 HOH HOH . G 4 HOH D 14 314 34 HOH HOH . G 4 HOH D 15 315 9 HOH HOH . G 4 HOH D 16 316 39 HOH HOH . G 4 HOH D 17 317 52 HOH HOH . G 4 HOH D 18 318 53 HOH HOH . G 4 HOH D 19 319 67 HOH HOH . G 4 HOH D 20 320 31 HOH HOH . G 4 HOH D 21 321 48 HOH HOH . G 4 HOH D 22 322 43 HOH HOH . G 4 HOH D 23 323 95 HOH HOH . G 4 HOH D 24 324 20 HOH HOH . G 4 HOH D 25 325 2 HOH HOH . G 4 HOH D 26 326 56 HOH HOH . G 4 HOH D 27 327 61 HOH HOH . G 4 HOH D 28 328 42 HOH HOH . G 4 HOH D 29 329 21 HOH HOH . G 4 HOH D 30 330 3 HOH HOH . G 4 HOH D 31 331 30 HOH HOH . G 4 HOH D 32 332 62 HOH HOH . G 4 HOH D 33 333 72 HOH HOH . G 4 HOH D 34 334 74 HOH HOH . G 4 HOH D 35 335 76 HOH HOH . G 4 HOH D 36 336 66 HOH HOH . G 4 HOH D 37 337 54 HOH HOH . G 4 HOH D 38 338 41 HOH HOH . G 4 HOH D 39 339 50 HOH HOH . G 4 HOH D 40 340 33 HOH HOH . G 4 HOH D 41 341 29 HOH HOH . G 4 HOH D 42 342 25 HOH HOH . G 4 HOH D 43 343 23 HOH HOH . G 4 HOH D 44 344 71 HOH HOH . G 4 HOH D 45 345 32 HOH HOH . G 4 HOH D 46 346 57 HOH HOH . G 4 HOH D 47 347 11 HOH HOH . G 4 HOH D 48 348 79 HOH HOH . G 4 HOH D 49 349 60 HOH HOH . G 4 HOH D 50 350 8 HOH HOH . G 4 HOH D 51 351 88 HOH HOH . G 4 HOH D 52 352 55 HOH HOH . G 4 HOH D 53 353 84 HOH HOH . G 4 HOH D 54 354 68 HOH HOH . G 4 HOH D 55 355 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' GMP . . . C 2 -18.814 30.692 5.109 1 37.42 ? O5' GMP 201 A 1 HETATM 2 C C5' GMP . . . C 2 -18.045 30.568 6.3 1 40.26 ? C5' GMP 201 A 1 HETATM 3 C C4' GMP . . . C 2 -18.341 31.677 7.281 0.94 38.78 ? C4' GMP 201 A 1 HETATM 4 O O4' GMP . . . C 2 -17.935 32.95 6.712 0.76 28.65 ? O4' GMP 201 A 1 HETATM 5 C C3' GMP . . . C 2 -19.814 31.831 7.681 1 43.32 ? C3' GMP 201 A 1 HETATM 6 O O3' GMP . . . C 2 -19.904 32.011 9.095 0.63 35.2 ? O3' GMP 201 A 1 HETATM 7 C C2' GMP . . . C 2 -20.24 33.121 6.976 1 28.89 ? C2' GMP 201 A 1 HETATM 8 O O2' GMP . . . C 2 -21.27 33.834 7.627 0.8 34.03 ? O2' GMP 201 A 1 HETATM 9 C C1' GMP . . . C 2 -18.937 33.906 6.963 0.94 39.55 ? C1' GMP 201 A 1 HETATM 10 N N9 GMP . . . C 2 -18.873 34.937 5.926 0.79 28.75 ? N9 GMP 201 A 1 HETATM 11 C C8 GMP . . . C 2 -18.949 36.261 6.148 1 23.08 ? C8 GMP 201 A 1 HETATM 12 N N7 GMP . . . C 2 -18.858 36.887 4.957 0.47 21.82 ? N7 GMP 201 A 1 HETATM 13 C C5 GMP . . . C 2 -18.728 35.959 4.015 1 18.11 ? C5 GMP 201 A 1 HETATM 14 C C6 GMP . . . C 2 -18.588 36.06 2.492 0.59 24.01 ? C6 GMP 201 A 1 HETATM 15 O O6 GMP . . . C 2 -18.578 37.126 1.975 1 26.88 ? O6 GMP 201 A 1 HETATM 16 N N1 GMP . . . C 2 -18.464 34.869 1.705 0.9 30.02 ? N1 GMP 201 A 1 HETATM 17 C C2 GMP . . . C 2 -18.473 33.58 2.359 0.5 31.72 ? C2 GMP 201 A 1 HETATM 18 N N2 GMP . . . C 2 -18.348 32.362 1.583 1 38.04 ? N2 GMP 201 A 1 HETATM 19 N N3 GMP . . . C 2 -18.614 33.491 3.81 1 34.89 ? N3 GMP 201 A 1 HETATM 20 C C4 GMP . . . C 2 -18.74 34.738 4.62 0.53 26.29 ? C4 GMP 201 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #