data_7DQW # _model_server_result.job_id 2nGDXaqm8RQvnABOBGez3Q _model_server_result.datetime_utc '2024-11-08 03:46:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 7DQW # _exptl.entry_id 7DQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 133.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1H-benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQW _cell.length_a 61.666 _cell.length_b 67.492 _cell.length_c 103.214 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N3' _chem_comp.formula_weight 133.151 _chem_comp.id AX7 _chem_comp.mon_nstd_flag . _chem_comp.name 1H-benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAF CAI AX7 sing 83 n y NAF CAH AX7 sing 84 n y CAI CAD AX7 doub 85 n y CAI CAJ AX7 sing 86 n y CAD CAB AX7 sing 87 n y CAB CAC AX7 doub 88 n y CAC CAE AX7 sing 89 n y CAE CAJ AX7 doub 90 n y CAJ NAG AX7 sing 91 n y NAG CAH AX7 doub 92 n y CAH NAA AX7 sing 93 n n NAF HNAF AX7 sing 94 n n CAD HAD AX7 sing 95 n n CAB HAB AX7 sing 96 n n CAC HAC AX7 sing 97 n n CAE HAE AX7 sing 98 n n NAA HNAA AX7 sing 99 n n NAA HNAB AX7 sing 100 n n # _atom_sites.entry_id 7DQW _atom_sites.fract_transf_matrix[1][1] 0.016216 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014817 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AX7 A 1 301 1 AX7 M68 . D 3 4CH A 1 302 1 4CH A21 . E 4 PO4 A 1 303 2 PO4 PO4 . F 4 PO4 A 1 304 3 PO4 PO4 . G 3 4CH B 1 301 2 4CH A21 . H 4 PO4 B 1 302 1 PO4 PO4 . I 5 HOH A 1 401 39 HOH HOH . I 5 HOH A 2 402 48 HOH HOH . I 5 HOH A 3 403 46 HOH HOH . I 5 HOH A 4 404 17 HOH HOH . I 5 HOH A 5 405 38 HOH HOH . I 5 HOH A 6 406 28 HOH HOH . I 5 HOH A 7 407 34 HOH HOH . I 5 HOH A 8 408 7 HOH HOH . I 5 HOH A 9 409 43 HOH HOH . I 5 HOH A 10 410 11 HOH HOH . I 5 HOH A 11 411 13 HOH HOH . I 5 HOH A 12 412 12 HOH HOH . I 5 HOH A 13 413 26 HOH HOH . I 5 HOH A 14 414 18 HOH HOH . I 5 HOH A 15 415 24 HOH HOH . I 5 HOH A 16 416 29 HOH HOH . I 5 HOH A 17 417 23 HOH HOH . I 5 HOH A 18 418 14 HOH HOH . I 5 HOH A 19 419 32 HOH HOH . I 5 HOH A 20 420 27 HOH HOH . I 5 HOH A 21 421 37 HOH HOH . I 5 HOH A 22 422 2 HOH HOH . I 5 HOH A 23 423 41 HOH HOH . I 5 HOH A 24 424 50 HOH HOH . J 5 HOH B 1 401 44 HOH HOH . J 5 HOH B 2 402 49 HOH HOH . J 5 HOH B 3 403 30 HOH HOH . J 5 HOH B 4 404 33 HOH HOH . J 5 HOH B 5 405 19 HOH HOH . J 5 HOH B 6 406 25 HOH HOH . J 5 HOH B 7 407 5 HOH HOH . J 5 HOH B 8 408 22 HOH HOH . J 5 HOH B 9 409 20 HOH HOH . J 5 HOH B 10 410 9 HOH HOH . J 5 HOH B 11 411 31 HOH HOH . J 5 HOH B 12 412 8 HOH HOH . J 5 HOH B 13 413 3 HOH HOH . J 5 HOH B 14 414 47 HOH HOH . J 5 HOH B 15 415 40 HOH HOH . J 5 HOH B 16 416 36 HOH HOH . J 5 HOH B 17 417 45 HOH HOH . J 5 HOH B 18 418 10 HOH HOH . J 5 HOH B 19 419 15 HOH HOH . J 5 HOH B 20 420 16 HOH HOH . J 5 HOH B 21 421 6 HOH HOH . J 5 HOH B 22 422 35 HOH HOH . J 5 HOH B 23 423 4 HOH HOH . J 5 HOH B 24 424 21 HOH HOH . J 5 HOH B 25 425 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAF AX7 . . . C 2 17.297 -0.575 14.783 1 33.15 ? NAF AX7 301 A 1 HETATM 2 C CAI AX7 . . . C 2 16.497 0.479 14.337 1 33.65 ? CAI AX7 301 A 1 HETATM 3 C CAD AX7 . . . C 2 15.476 1.173 14.984 1 33.61 ? CAD AX7 301 A 1 HETATM 4 C CAB AX7 . . . C 2 14.842 2.21 14.313 1 34.13 ? CAB AX7 301 A 1 HETATM 5 C CAC AX7 . . . C 2 15.202 2.547 13.012 1 33.57 ? CAC AX7 301 A 1 HETATM 6 C CAE AX7 . . . C 2 16.218 1.865 12.355 1 33.69 ? CAE AX7 301 A 1 HETATM 7 C CAJ AX7 . . . C 2 16.858 0.837 13.037 1 33.61 ? CAJ AX7 301 A 1 HETATM 8 N NAG AX7 . . . C 2 17.895 -0.005 12.687 1 33.72 ? NAG AX7 301 A 1 HETATM 9 C CAH AX7 . . . C 2 18.123 -0.825 13.757 1 33.68 ? CAH AX7 301 A 1 HETATM 10 N NAA AX7 . . . C 2 19.084 -1.751 13.755 1 33.97 ? NAA AX7 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 42 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #