data_7DQX # _model_server_result.job_id Jb9sm_nhxiVliWPZJ-4oCg _model_server_result.datetime_utc '2025-08-04 08:57:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dqx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":801}' # _entry.id 7DQX # _exptl.entry_id 7DQX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 696.501 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PTERIN CYTOSINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DQX _cell.length_a 112.86 _cell.length_b 126.792 _cell.length_c 294.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DQX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 G S8' MCN . A MCN 801 1_555 H MO MO . A MO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 G S7' MCN . A MCN 801 1_555 H MO MO . A MO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc3 C SG CYS 42 C CYS 42 1_555 J FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc4 C SG CYS 47 C CYS 47 1_555 J FE2 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc5 C SG CYS 50 C CYS 50 1_555 J FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc6 C SG CYS 62 C CYS 62 1_555 J FE1 FES . C FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 C SG CYS 101 C CYS 101 1_555 K FE2 FES . C FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc8 C SG CYS 104 C CYS 104 1_555 K FE1 FES . C FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc9 C SG CYS 137 C CYS 137 1_555 K FE1 FES . C FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc10 C SG CYS 139 C CYS 139 1_555 K FE2 FES . C FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc11 E SG CYS 42 F CYS 42 1_555 M FE2 FES . F FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 E SG CYS 47 F CYS 47 1_555 M FE2 FES . F FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc13 E SG CYS 50 F CYS 50 1_555 M FE1 FES . F FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 E SG CYS 62 F CYS 62 1_555 M FE1 FES . F FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc15 E SG CYS 101 F CYS 101 1_555 N FE2 FES . F FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc16 E SG CYS 104 F CYS 104 1_555 N FE1 FES . F FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc17 E SG CYS 137 F CYS 137 1_555 N FE1 FES . F FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc18 E SG CYS 139 F CYS 139 1_555 N FE2 FES . F FES 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc19 O S8' MCN . D MCN 801 1_555 P MO MO . D MO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc20 O S7' MCN . D MCN 801 1_555 P MO MO . D MO 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'C19 H22 N8 O13 P2 S2' _chem_comp.formula_weight 696.501 _chem_comp.id MCN _chem_comp.mon_nstd_flag . _chem_comp.name 'PTERIN CYTOSINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 MCN sing 311 n n N1 C6 MCN sing 312 n n N1 C1' MCN sing 313 n n C2 N3 MCN sing 314 n n C2 O2 MCN doub 315 n n N3 C4 MCN doub 316 n n C4 C5 MCN sing 317 n n C4 N4 MCN sing 318 n n C5 C6 MCN doub 319 n n C5 H5 MCN sing 320 n n C6 H6 MCN sing 321 n n N4 HN41 MCN sing 322 n n N4 HN42 MCN sing 323 n n C1' C2D MCN sing 324 n n C1' O4D MCN sing 325 n n C1' H1' MCN sing 326 n n C2D O2' MCN sing 327 n n C2D C3' MCN sing 328 n n C2D H2' MCN sing 329 n n O2' HO2' MCN sing 330 n n C3' C4D MCN sing 331 n n C3' O3' MCN sing 332 n n C3' H3' MCN sing 333 n n C4D O4D MCN sing 334 n n C4D C5' MCN sing 335 n n C4D H4' MCN sing 336 n n O3' HO3' MCN sing 337 n n C5' O5' MCN sing 338 n n C5' "H5'1" MCN sing 339 n n C5' "H5'2" MCN sing 340 n n O5' PA MCN sing 341 n n PA O1A MCN doub 342 n n PA O2A MCN sing 343 n n PA O3A MCN sing 344 n n O2A HOA2 MCN sing 345 n n O3A PB MCN sing 346 n n PB O1B MCN doub 347 n n PB O2B MCN sing 348 n n PB O3B MCN sing 349 n n O2B HOB2 MCN sing 350 n n O3B C10 MCN sing 351 n n C10 C9' MCN sing 352 n n C10 H101 MCN sing 353 n n C10 H102 MCN sing 354 n n C9' C8' MCN sing 355 n n C9' O9' MCN sing 356 n n C9' H9' MCN sing 357 n n C8' S8' MCN sing 358 n n C8' C7' MCN doub 359 n n S8' HS8 MCN sing 360 n n C7' S7' MCN sing 361 n n C7' C6' MCN sing 362 n n S7' HS7 MCN sing 363 n n C6' C7 MCN sing 364 n y C6' N5' MCN doub 365 n y C7 O9' MCN sing 366 n n C7 N8' MCN doub 367 n y N5' C4A MCN sing 368 n y C4A C4B MCN sing 369 n y C4A C4' MCN doub 370 n y N8' C4B MCN sing 371 n y C4B N1' MCN doub 372 n y N1' C2' MCN sing 373 n y C2' N2' MCN sing 374 n n C2' N3' MCN doub 375 n y N2' HN21 MCN sing 376 n n N2' HN22 MCN sing 377 n n N3' C4' MCN sing 378 n y C4' O4' MCN sing 379 n n O4' HO4 MCN sing 380 n n # _atom_sites.entry_id 7DQX _atom_sites.fract_transf_matrix[1][1] 0.008861 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007887 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003396 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 MCN A 1 801 801 MCN MCN . H 6 MO A 1 802 802 MO MO . I 7 FAD B 1 301 301 FAD FAD . J 8 FES C 1 201 201 FES FES . K 8 FES C 1 202 202 FES FES . L 7 FAD E 1 301 301 FAD FAD . M 8 FES F 1 201 201 FES FES . N 8 FES F 1 202 202 FES FES . O 5 MCN D 1 801 801 MCN MCN . P 6 MO D 1 802 802 MO MO . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MCN . . . G 5 162.546 144.549 24.879 1 61.46 ? N1 MCN 801 A 1 HETATM 2 C C2 MCN . . . G 5 162.988 143.734 23.805 1 59.09 ? C2 MCN 801 A 1 HETATM 3 N N3 MCN . . . G 5 162.08 143.137 23.002 1 57.91 ? N3 MCN 801 A 1 HETATM 4 C C4 MCN . . . G 5 160.757 143.314 23.225 1 56.47 ? C4 MCN 801 A 1 HETATM 5 C C5 MCN . . . G 5 160.31 144.101 24.275 1 57.47 ? C5 MCN 801 A 1 HETATM 6 C C6 MCN . . . G 5 161.234 144.714 25.099 1 59.59 ? C6 MCN 801 A 1 HETATM 7 O O2 MCN . . . G 5 164.206 143.556 23.582 1 58.27 ? O2 MCN 801 A 1 HETATM 8 N N4 MCN . . . G 5 159.845 142.718 22.432 1 53.18 ? N4 MCN 801 A 1 HETATM 9 C C1' MCN . . . G 5 163.508 145.193 25.773 1 64.06 ? C1' MCN 801 A 1 HETATM 10 C C2D MCN . . . G 5 162.969 146.489 26.346 1 64.33 ? C2D MCN 801 A 1 HETATM 11 O O2' MCN . . . G 5 163.788 147.565 25.932 1 61.43 ? O2' MCN 801 A 1 HETATM 12 C C3' MCN . . . G 5 163.102 146.348 27.84 1 65.29 ? C3' MCN 801 A 1 HETATM 13 C C4D MCN . . . G 5 163.186 144.862 28.096 1 65.7 ? C4D MCN 801 A 1 HETATM 14 O O4D MCN . . . G 5 163.699 144.307 26.88 1 64.63 ? O4D MCN 801 A 1 HETATM 15 O O3' MCN . . . G 5 164.323 146.946 28.267 1 62.79 ? O3' MCN 801 A 1 HETATM 16 C C5' MCN . . . G 5 161.827 144.244 28.443 1 66.16 ? C5' MCN 801 A 1 HETATM 17 O O5' MCN . . . G 5 160.832 145.258 28.587 1 67.66 ? O5' MCN 801 A 1 HETATM 18 P PA MCN . . . G 5 160.594 145.964 30.014 1 69.71 ? PA MCN 801 A 1 HETATM 19 O O1A MCN . . . G 5 161.509 145.36 31.047 1 66.91 ? O1A MCN 801 A 1 HETATM 20 O O2A MCN . . . G 5 159.101 146.007 30.249 1 70.39 ? O2A MCN 801 A 1 HETATM 21 O O3A MCN . . . G 5 161.159 147.454 29.794 1 75.67 ? O3A MCN 801 A 1 HETATM 22 P PB MCN . . . G 5 160.492 148.649 30.629 1 80.86 ? PB MCN 801 A 1 HETATM 23 O O1B MCN . . . G 5 160.104 148.11 31.977 1 72.86 ? O1B MCN 801 A 1 HETATM 24 O O2B MCN . . . G 5 161.358 149.877 30.532 1 77.48 ? O2B MCN 801 A 1 HETATM 25 O O3B MCN . . . G 5 159.169 148.857 29.751 1 82.08 ? O3B MCN 801 A 1 HETATM 26 C C10 MCN . . . G 5 159.327 148.85 28.335 1 81.52 ? C10 MCN 801 A 1 HETATM 27 C C9' MCN . . . G 5 159.592 150.275 27.851 1 81.35 ? C9' MCN 801 A 1 HETATM 28 C C8' MCN . . . G 5 159.062 151.274 28.849 1 84.65 ? C8' MCN 801 A 1 HETATM 29 S S8' MCN . . . G 5 160.079 152.256 29.718 1 87.84 ? S8' MCN 801 A 1 HETATM 30 C C7' MCN . . . G 5 157.758 151.378 29.057 1 82.61 ? C7' MCN 801 A 1 HETATM 31 S S7' MCN . . . G 5 157.222 151.99 30.54 1 86.77 ? S7' MCN 801 A 1 HETATM 32 C C6' MCN . . . G 5 156.855 150.894 27.962 1 79.99 ? C6' MCN 801 A 1 HETATM 33 C C7 MCN . . . G 5 157.51 150.404 26.712 1 78.31 ? C7 MCN 801 A 1 HETATM 34 O O9' MCN . . . G 5 158.875 150.437 26.634 1 79.92 ? O9' MCN 801 A 1 HETATM 35 N N5' MCN . . . G 5 155.516 150.863 28.081 1 76.49 ? N5' MCN 801 A 1 HETATM 36 C C4A MCN . . . G 5 154.804 150.391 27.038 1 72.59 ? C4A MCN 801 A 1 HETATM 37 N N8' MCN . . . G 5 156.79 149.929 25.679 1 76.81 ? N8' MCN 801 A 1 HETATM 38 C C4B MCN . . . G 5 155.452 149.906 25.792 1 74.83 ? C4B MCN 801 A 1 HETATM 39 N N1' MCN . . . G 5 154.677 149.448 24.788 1 74.52 ? N1' MCN 801 A 1 HETATM 40 C C2' MCN . . . G 5 153.325 149.426 24.904 1 71.34 ? C2' MCN 801 A 1 HETATM 41 N N2' MCN . . . G 5 152.591 148.959 23.875 1 66.7 ? N2' MCN 801 A 1 HETATM 42 N N3' MCN . . . G 5 152.668 149.854 26.011 1 71.14 ? N3' MCN 801 A 1 HETATM 43 C C4' MCN . . . G 5 153.333 150.332 27.082 1 69.24 ? C4' MCN 801 A 1 HETATM 44 O O4' MCN . . . G 5 152.685 150.761 28.187 1 66 ? O4' MCN 801 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #