data_7DRJ # _model_server_result.job_id obrDxp5sy-oNoJTqfw_4ZQ _model_server_result.datetime_utc '2024-10-18 05:23:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7drj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":207}' # _entry.id 7DRJ # _exptl.entry_id 7DRJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.18 _cell.angle_gamma 90 _cell.entry_id 7DRJ _cell.length_a 127.54 _cell.length_b 59.376 _cell.length_c 72.985 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DRJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 X N N ? 3 Y N N ? 3 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 77 A ASP 57 1_555 N ZN ZN . A ZN 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 A OD1 ASP 77 A ASP 57 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc3 A OD2 ASP 77 A ASP 57 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A OD1 ASP 80 A ASP 60 1_555 N ZN ZN . A ZN 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc5 A OD2 ASP 98 A ASP 78 1_555 N ZN ZN . A ZN 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc6 A OD1 ASP 98 A ASP 78 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc7 A OD1 ASP 102 A ASP 82 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc8 A OD2 ASP 102 A ASP 82 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc9 C O44 PO9 . A PO9 201 1_555 O ZN ZN . A ZN 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc10 N ZN ZN . A ZN 212 1_555 EA O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc11 B OD1 ASP 77 B ASP 57 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc12 B OD2 ASP 77 B ASP 57 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc13 B O ASP 77 B ASP 57 1_555 CA ZN ZN . B ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc14 B OD1 ASP 77 B ASP 57 1_555 CA ZN ZN . B ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc15 B OD1 ASP 80 B ASP 60 1_555 CA ZN ZN . B ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc16 B OD1 ASP 98 B ASP 78 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc17 B OD2 ASP 98 B ASP 78 1_555 CA ZN ZN . B ZN 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc18 B OD1 ASP 102 B ASP 82 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc19 B OD2 ASP 102 B ASP 82 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc20 S O44 PO9 . B PO9 702 1_555 BA ZN ZN . B ZN 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc21 CA ZN ZN . B ZN 712 1_555 FA O HOH . B HOH 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 77 n n C1 O5 BU1 sing 78 n n C1 H11 BU1 sing 79 n n C1 H12 BU1 sing 80 n n C2 C3 BU1 sing 81 n n C2 H21 BU1 sing 82 n n C2 H22 BU1 sing 83 n n C3 C4 BU1 sing 84 n n C3 H31 BU1 sing 85 n n C3 H32 BU1 sing 86 n n C4 O6 BU1 sing 87 n n C4 H41 BU1 sing 88 n n C4 H42 BU1 sing 89 n n O5 HO5 BU1 sing 90 n n O6 HO6 BU1 sing 91 n n # _atom_sites.entry_id 7DRJ _atom_sites.fract_transf_matrix[1][1] 0.007841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002274 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO9 A 1 201 201 PO9 PO9 . D 3 BU1 A 1 202 401 BU1 BU1 . E 3 BU1 A 1 203 501 BU1 BU1 . F 4 OLC A 1 204 601 OLC OLC . G 4 OLC A 1 205 702 OLC OLC . H 3 BU1 A 1 206 801 BU1 BU1 . I 3 BU1 A 1 207 1001 BU1 BU1 . J 3 BU1 A 1 208 1003 BU1 BU1 . K 3 BU1 A 1 209 1201 BU1 BU1 . L 3 BU1 A 1 210 1301 BU1 BU1 . M 3 BU1 A 1 211 1401 BU1 BU1 . N 5 ZN A 1 212 3 ZN ZN . O 5 ZN A 1 213 4 ZN ZN . P 6 ACY A 1 214 1 ACY ACY . Q 6 ACY A 1 215 3 ACY ACY . R 4 OLC B 1 701 701 OLC OLC . S 2 PO9 B 1 702 201 PO9 PO9 . T 4 OLC B 1 703 301 OLC OLC . U 3 BU1 B 1 704 401 BU1 BU1 . V 3 BU1 B 1 705 501 BU1 BU1 . W 3 BU1 B 1 706 701 BU1 BU1 . X 3 BU1 B 1 707 801 BU1 BU1 . Y 3 BU1 B 1 708 901 BU1 BU1 . Z 4 OLC B 1 709 902 OLC OLC . AA 3 BU1 B 1 710 1001 BU1 BU1 . BA 5 ZN B 1 711 1 ZN ZN . CA 5 ZN B 1 712 2 ZN ZN . DA 6 ACY B 1 713 2 ACY ACY . EA 7 HOH A 1 301 112 HOH HOH . EA 7 HOH A 2 302 61 HOH HOH . EA 7 HOH A 3 303 111 HOH HOH . EA 7 HOH A 4 304 132 HOH HOH . EA 7 HOH A 5 305 131 HOH HOH . EA 7 HOH A 6 306 55 HOH HOH . EA 7 HOH A 7 307 144 HOH HOH . EA 7 HOH A 8 308 83 HOH HOH . EA 7 HOH A 9 309 54 HOH HOH . EA 7 HOH A 10 310 59 HOH HOH . EA 7 HOH A 11 311 39 HOH HOH . EA 7 HOH A 12 312 3 HOH HOH . EA 7 HOH A 13 313 103 HOH HOH . EA 7 HOH A 14 314 52 HOH HOH . EA 7 HOH A 15 315 10 HOH HOH . EA 7 HOH A 16 316 25 HOH HOH . EA 7 HOH A 17 317 125 HOH HOH . EA 7 HOH A 18 318 30 HOH HOH . EA 7 HOH A 19 319 50 HOH HOH . EA 7 HOH A 20 320 145 HOH HOH . EA 7 HOH A 21 321 22 HOH HOH . EA 7 HOH A 22 322 113 HOH HOH . EA 7 HOH A 23 323 38 HOH HOH . EA 7 HOH A 24 324 45 HOH HOH . EA 7 HOH A 25 325 11 HOH HOH . EA 7 HOH A 26 326 116 HOH HOH . EA 7 HOH A 27 327 74 HOH HOH . EA 7 HOH A 28 328 101 HOH HOH . EA 7 HOH A 29 329 97 HOH HOH . EA 7 HOH A 30 330 126 HOH HOH . EA 7 HOH A 31 331 32 HOH HOH . EA 7 HOH A 32 332 100 HOH HOH . EA 7 HOH A 33 333 5 HOH HOH . EA 7 HOH A 34 334 107 HOH HOH . EA 7 HOH A 35 335 43 HOH HOH . EA 7 HOH A 36 336 106 HOH HOH . EA 7 HOH A 37 337 40 HOH HOH . EA 7 HOH A 38 338 7 HOH HOH . EA 7 HOH A 39 339 137 HOH HOH . EA 7 HOH A 40 340 143 HOH HOH . EA 7 HOH A 41 341 122 HOH HOH . EA 7 HOH A 42 342 76 HOH HOH . EA 7 HOH A 43 343 31 HOH HOH . EA 7 HOH A 44 344 141 HOH HOH . EA 7 HOH A 45 345 62 HOH HOH . EA 7 HOH A 46 346 78 HOH HOH . EA 7 HOH A 47 347 65 HOH HOH . EA 7 HOH A 48 348 79 HOH HOH . EA 7 HOH A 49 349 75 HOH HOH . EA 7 HOH A 50 350 19 HOH HOH . EA 7 HOH A 51 351 20 HOH HOH . EA 7 HOH A 52 352 104 HOH HOH . EA 7 HOH A 53 353 127 HOH HOH . EA 7 HOH A 54 354 36 HOH HOH . EA 7 HOH A 55 355 121 HOH HOH . EA 7 HOH A 56 356 64 HOH HOH . EA 7 HOH A 57 357 29 HOH HOH . EA 7 HOH A 58 358 80 HOH HOH . EA 7 HOH A 59 359 84 HOH HOH . EA 7 HOH A 60 360 68 HOH HOH . FA 7 HOH B 1 801 58 HOH HOH . FA 7 HOH B 2 802 60 HOH HOH . FA 7 HOH B 3 803 147 HOH HOH . FA 7 HOH B 4 804 51 HOH HOH . FA 7 HOH B 5 805 1 HOH HOH . FA 7 HOH B 6 806 53 HOH HOH . FA 7 HOH B 7 807 87 HOH HOH . FA 7 HOH B 8 808 73 HOH HOH . FA 7 HOH B 9 809 115 HOH HOH . FA 7 HOH B 10 810 99 HOH HOH . FA 7 HOH B 11 811 2 HOH HOH . FA 7 HOH B 12 812 146 HOH HOH . FA 7 HOH B 13 813 67 HOH HOH . FA 7 HOH B 14 814 89 HOH HOH . FA 7 HOH B 15 815 90 HOH HOH . FA 7 HOH B 16 816 114 HOH HOH . FA 7 HOH B 17 817 81 HOH HOH . FA 7 HOH B 18 818 94 HOH HOH . FA 7 HOH B 19 819 18 HOH HOH . FA 7 HOH B 20 820 124 HOH HOH . FA 7 HOH B 21 821 17 HOH HOH . FA 7 HOH B 22 822 26 HOH HOH . FA 7 HOH B 23 823 117 HOH HOH . FA 7 HOH B 24 824 42 HOH HOH . FA 7 HOH B 25 825 86 HOH HOH . FA 7 HOH B 26 826 108 HOH HOH . FA 7 HOH B 27 827 14 HOH HOH . FA 7 HOH B 28 828 135 HOH HOH . FA 7 HOH B 29 829 110 HOH HOH . FA 7 HOH B 30 830 72 HOH HOH . FA 7 HOH B 31 831 142 HOH HOH . FA 7 HOH B 32 832 34 HOH HOH . FA 7 HOH B 33 833 47 HOH HOH . FA 7 HOH B 34 834 57 HOH HOH . FA 7 HOH B 35 835 133 HOH HOH . FA 7 HOH B 36 836 109 HOH HOH . FA 7 HOH B 37 837 46 HOH HOH . FA 7 HOH B 38 838 37 HOH HOH . FA 7 HOH B 39 839 98 HOH HOH . FA 7 HOH B 40 840 91 HOH HOH . FA 7 HOH B 41 841 119 HOH HOH . FA 7 HOH B 42 842 69 HOH HOH . FA 7 HOH B 43 843 48 HOH HOH . FA 7 HOH B 44 844 35 HOH HOH . FA 7 HOH B 45 845 27 HOH HOH . FA 7 HOH B 46 846 140 HOH HOH . FA 7 HOH B 47 847 21 HOH HOH . FA 7 HOH B 48 848 66 HOH HOH . FA 7 HOH B 49 849 92 HOH HOH . FA 7 HOH B 50 850 44 HOH HOH . FA 7 HOH B 51 851 118 HOH HOH . FA 7 HOH B 52 852 138 HOH HOH . FA 7 HOH B 53 853 8 HOH HOH . FA 7 HOH B 54 854 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . I 3 -5.274 40.806 71.974 1 65.18 ? C1 BU1 207 A 1 HETATM 2 C C2 BU1 . . . I 3 -3.998 41.644 71.962 1 63.91 ? C2 BU1 207 A 1 HETATM 3 C C3 BU1 . . . I 3 -3.027 41.105 73.01 1 67.1 ? C3 BU1 207 A 1 HETATM 4 C C4 BU1 . . . I 3 -1.79 41.998 73.062 1 64.88 ? C4 BU1 207 A 1 HETATM 5 O O5 BU1 . . . I 3 -6.173 41.31 71.026 1 69.77 ? O5 BU1 207 A 1 HETATM 6 O O6 BU1 . . . I 3 -1.265 41.993 74.361 1 80.99 ? O6 BU1 207 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #