data_7DRK
#
_model_server_result.job_id            NjfEFL8qiXho5sByiSttkQ 
_model_server_result.datetime_utc      '2024-11-08 03:12:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7drk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Y","auth_seq_id":212}' 
#
_entry.id    7DRK 
#
_exptl.entry_id    7DRK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,4-BUTANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.66 
_cell.angle_gamma         90 
_cell.entry_id            7DRK 
_cell.length_a            127.781 
_cell.length_b            59.432 
_cell.length_c            73.027 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DRK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 Q N N 
? 6 T N N 
? 6 U N N 
? 6 V N N 
? 6 W N N 
? 6 X N N 
? 6 Y N N 
? 6 Z N N 
? 6 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASP 77 A ASP 57 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? 
metalc ? metalc2 A OD1 ASP 77 A ASP 57 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
metalc ? metalc3 A OD1 ASP 77 A ASP 57 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc4 A OD2 ASP 77 A ASP 57 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
metalc ? metalc5 A OD1 ASP 80 A ASP 60 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? 
metalc ? metalc6 A OD2 ASP 80 A ASP 60 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc7 A OD2 ASP 98 A ASP 78 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc8 A OD1 ASP 98 A ASP 78 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc9 A OD1 ASP 102 A ASP 82 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc10 A OD2 ASP 102 A ASP 82 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? 
metalc ? metalc11 C ZN ZN . A ZN 201 1_555 E OAT 58A . A 58A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc12 D ZN ZN . A ZN 202 1_555 E OAX 58A . A 58A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc13 B O ASP 77 B ASP 57 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc14 B OD1 ASP 77 B ASP 57 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc15 B OD1 ASP 77 B ASP 57 1_555 O ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc16 B OD2 ASP 77 B ASP 57 1_555 O ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc17 B OD1 ASP 80 B ASP 60 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc18 B OD2 ASP 80 B ASP 60 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? 
metalc ? metalc19 B OD2 ASP 98 B ASP 78 1_555 N ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc20 B OD1 ASP 98 B ASP 78 1_555 O ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc21 B OD2 ASP 102 B ASP 82 1_555 O ZN ZN . B ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc22 N ZN ZN . B ZN 201 1_555 P OAS 58A . B 58A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc23 O ZN ZN . B ZN 202 1_555 P OAX 58A . B 58A 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,4-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 BU1 sing 231 n n 
C1 O5 BU1 sing 232 n n 
C1 H11 BU1 sing 233 n n 
C1 H12 BU1 sing 234 n n 
C2 C3 BU1 sing 235 n n 
C2 H21 BU1 sing 236 n n 
C2 H22 BU1 sing 237 n n 
C3 C4 BU1 sing 238 n n 
C3 H31 BU1 sing 239 n n 
C3 H32 BU1 sing 240 n n 
C4 O6 BU1 sing 241 n n 
C4 H41 BU1 sing 242 n n 
C4 H42 BU1 sing 243 n n 
O5 HO5 BU1 sing 244 n n 
O6 HO6 BU1 sing 245 n n 
#
_atom_sites.entry_id                     7DRK 
_atom_sites.fract_transf_matrix[1][1]    0.007826 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002341 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016826 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014293 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 201 201 ZN ZN . 
D 2 ZN A 1 202 301 ZN ZN . 
E 3 58A A 1 203 401 58A 58A . 
F 4 G3P A 1 204 1401 G3P G3P . 
G 5 OLC A 1 205 1601 OLC OLC . 
H 6 BU1 A 1 206 34 BU1 BU1 . 
I 4 G3P A 1 207 1 G3P G3P . 
J 4 G3P A 1 208 4 G3P G3P . 
K 4 G3P A 1 209 6 G3P G3P . 
L 7 ACY A 1 210 1 ACY ACY . 
M 7 ACY A 1 211 2 ACY ACY . 
N 2 ZN B 1 201 201 ZN ZN . 
O 2 ZN B 1 202 301 ZN ZN . 
P 3 58A B 1 203 501 58A 58A . 
Q 6 BU1 B 1 204 1101 BU1 BU1 . 
R 5 OLC B 1 205 1301 OLC OLC . 
S 5 OLC B 1 206 1901 OLC OLC . 
T 6 BU1 B 1 207 18 BU1 BU1 . 
U 6 BU1 B 1 208 24 BU1 BU1 . 
V 6 BU1 B 1 209 35 BU1 BU1 . 
W 6 BU1 B 1 210 36 BU1 BU1 . 
X 6 BU1 B 1 211 37 BU1 BU1 . 
Y 6 BU1 B 1 212 2 BU1 BU1 . 
Z 6 BU1 B 1 213 6 BU1 BU1 . 
AA 6 BU1 B 1 214 10 BU1 BU1 . 
BA 4 G3P B 1 215 2 G3P G3P . 
CA 8 HOH A 1 301 117 HOH HOH . 
CA 8 HOH A 2 302 29 HOH HOH . 
CA 8 HOH A 3 303 33 HOH HOH . 
CA 8 HOH A 4 304 77 HOH HOH . 
CA 8 HOH A 5 305 133 HOH HOH . 
CA 8 HOH A 6 306 18 HOH HOH . 
CA 8 HOH A 7 307 86 HOH HOH . 
CA 8 HOH A 8 308 10 HOH HOH . 
CA 8 HOH A 9 309 109 HOH HOH . 
CA 8 HOH A 10 310 80 HOH HOH . 
CA 8 HOH A 11 311 47 HOH HOH . 
CA 8 HOH A 12 312 85 HOH HOH . 
CA 8 HOH A 13 313 123 HOH HOH . 
CA 8 HOH A 14 314 16 HOH HOH . 
CA 8 HOH A 15 315 67 HOH HOH . 
CA 8 HOH A 16 316 38 HOH HOH . 
CA 8 HOH A 17 317 27 HOH HOH . 
CA 8 HOH A 18 318 118 HOH HOH . 
CA 8 HOH A 19 319 14 HOH HOH . 
CA 8 HOH A 20 320 130 HOH HOH . 
CA 8 HOH A 21 321 101 HOH HOH . 
CA 8 HOH A 22 322 5 HOH HOH . 
CA 8 HOH A 23 323 2 HOH HOH . 
CA 8 HOH A 24 324 145 HOH HOH . 
CA 8 HOH A 25 325 74 HOH HOH . 
CA 8 HOH A 26 326 58 HOH HOH . 
CA 8 HOH A 27 327 114 HOH HOH . 
CA 8 HOH A 28 328 140 HOH HOH . 
CA 8 HOH A 29 329 71 HOH HOH . 
CA 8 HOH A 30 330 136 HOH HOH . 
CA 8 HOH A 31 331 108 HOH HOH . 
CA 8 HOH A 32 332 65 HOH HOH . 
CA 8 HOH A 33 333 94 HOH HOH . 
CA 8 HOH A 34 334 113 HOH HOH . 
CA 8 HOH A 35 335 31 HOH HOH . 
CA 8 HOH A 36 336 35 HOH HOH . 
CA 8 HOH A 37 337 11 HOH HOH . 
CA 8 HOH A 38 338 23 HOH HOH . 
CA 8 HOH A 39 339 9 HOH HOH . 
CA 8 HOH A 40 340 41 HOH HOH . 
CA 8 HOH A 41 341 87 HOH HOH . 
CA 8 HOH A 42 342 69 HOH HOH . 
CA 8 HOH A 43 343 83 HOH HOH . 
CA 8 HOH A 44 344 88 HOH HOH . 
CA 8 HOH A 45 345 32 HOH HOH . 
CA 8 HOH A 46 346 84 HOH HOH . 
CA 8 HOH A 47 347 50 HOH HOH . 
CA 8 HOH A 48 348 95 HOH HOH . 
CA 8 HOH A 49 349 44 HOH HOH . 
CA 8 HOH A 50 350 59 HOH HOH . 
CA 8 HOH A 51 351 21 HOH HOH . 
CA 8 HOH A 52 352 53 HOH HOH . 
DA 8 HOH B 1 301 124 HOH HOH . 
DA 8 HOH B 2 302 112 HOH HOH . 
DA 8 HOH B 3 303 134 HOH HOH . 
DA 8 HOH B 4 304 12 HOH HOH . 
DA 8 HOH B 5 305 66 HOH HOH . 
DA 8 HOH B 6 306 4 HOH HOH . 
DA 8 HOH B 7 307 56 HOH HOH . 
DA 8 HOH B 8 308 81 HOH HOH . 
DA 8 HOH B 9 309 129 HOH HOH . 
DA 8 HOH B 10 310 111 HOH HOH . 
DA 8 HOH B 11 311 128 HOH HOH . 
DA 8 HOH B 12 312 25 HOH HOH . 
DA 8 HOH B 13 313 62 HOH HOH . 
DA 8 HOH B 14 314 43 HOH HOH . 
DA 8 HOH B 15 315 110 HOH HOH . 
DA 8 HOH B 16 316 100 HOH HOH . 
DA 8 HOH B 17 317 91 HOH HOH . 
DA 8 HOH B 18 318 8 HOH HOH . 
DA 8 HOH B 19 319 131 HOH HOH . 
DA 8 HOH B 20 320 60 HOH HOH . 
DA 8 HOH B 21 321 98 HOH HOH . 
DA 8 HOH B 22 322 19 HOH HOH . 
DA 8 HOH B 23 323 115 HOH HOH . 
DA 8 HOH B 24 324 51 HOH HOH . 
DA 8 HOH B 25 325 137 HOH HOH . 
DA 8 HOH B 26 326 36 HOH HOH . 
DA 8 HOH B 27 327 119 HOH HOH . 
DA 8 HOH B 28 328 13 HOH HOH . 
DA 8 HOH B 29 329 73 HOH HOH . 
DA 8 HOH B 30 330 116 HOH HOH . 
DA 8 HOH B 31 331 125 HOH HOH . 
DA 8 HOH B 32 332 82 HOH HOH . 
DA 8 HOH B 33 333 106 HOH HOH . 
DA 8 HOH B 34 334 63 HOH HOH . 
DA 8 HOH B 35 335 48 HOH HOH . 
DA 8 HOH B 36 336 54 HOH HOH . 
DA 8 HOH B 37 337 57 HOH HOH . 
DA 8 HOH B 38 338 72 HOH HOH . 
DA 8 HOH B 39 339 141 HOH HOH . 
DA 8 HOH B 40 340 102 HOH HOH . 
DA 8 HOH B 41 341 6 HOH HOH . 
DA 8 HOH B 42 342 79 HOH HOH . 
DA 8 HOH B 43 343 20 HOH HOH . 
DA 8 HOH B 44 344 97 HOH HOH . 
DA 8 HOH B 45 345 99 HOH HOH . 
DA 8 HOH B 46 346 103 HOH HOH . 
DA 8 HOH B 47 347 42 HOH HOH . 
DA 8 HOH B 48 348 105 HOH HOH . 
DA 8 HOH B 49 349 22 HOH HOH . 
DA 8 HOH B 50 350 90 HOH HOH . 
DA 8 HOH B 51 351 17 HOH HOH . 
DA 8 HOH B 52 352 138 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 BU1 . . . Y 6 -29.174 0.778 -23.73 1 59.92 ? C1 BU1 212 B 1 
HETATM 2 C C2 BU1 . . . Y 6 -27.874 0.222 -23.154 1 68.1 ? C2 BU1 212 B 1 
HETATM 3 C C3 BU1 . . . Y 6 -27.897 0.339 -21.632 1 57.61 ? C3 BU1 212 B 1 
HETATM 4 C C4 BU1 . . . Y 6 -26.463 0.374 -21.108 1 63.41 ? C4 BU1 212 B 1 
HETATM 5 O O5 BU1 . . . Y 6 -28.946 1.221 -25.039 1 64.11 ? O5 BU1 212 B 1 
HETATM 6 O O6 BU1 . . . Y 6 -26.474 0.523 -19.715 1 65.18 ? O6 BU1 212 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#