data_7DRN # _model_server_result.job_id KbAx96Q6v4R_6zFEck8kjA _model_server_result.datetime_utc '2024-11-30 16:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7drn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 7DRN # _exptl.entry_id 7DRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.9 _cell.angle_gamma 90 _cell.entry_id 7DRN _cell.length_a 92.294 _cell.length_b 92.647 _cell.length_c 99.571 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G 1 1 C,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7DRN _atom_sites.fract_transf_matrix[1][1] 0.010835 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002086 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ANP A 1 401 402 ANP ANP . H 3 ANP C 1 401 401 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 3 5.387 -3.131 -27.953 1 79.2 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . G 3 6.336 -3.163 -29.118 1 77.83 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . G 3 5.452 -4.351 -27.067 1 78.1 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . G 3 4.003 -2.767 -28.405 1 78.72 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . G 3 5.046 -1.539 -25.428 1 79.2 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . G 3 5.89 -2.098 -24.317 1 80.46 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . G 3 4.651 -0.087 -25.371 1 78.32 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . G 3 5.904 -1.815 -26.924 1 79.31 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . G 3 2.764 -2.753 -24.263 1 72.9 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . G 3 1.397 -3.083 -24.789 1 74.44 -1 O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . G 3 2.945 -1.666 -23.25 1 70.61 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . G 3 3.692 -2.403 -25.519 1 76.6 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . G 3 3.424 -4.084 -23.68 1 71.52 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . G 3 2.721 -4.903 -22.759 1 71.91 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . G 3 3.521 -4.979 -21.473 1 71.33 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . G 3 3.523 -3.723 -20.797 1 71.71 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . G 3 2.932 -6.004 -20.529 1 70.41 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . G 3 3.822 -7.104 -20.395 1 71.02 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . G 3 2.763 -5.304 -19.211 1 70.93 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . G 3 3.731 -5.777 -18.283 1 72.65 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . G 3 2.996 -3.832 -19.473 1 70.94 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . G 3 1.722 -3.088 -19.32 1 70.22 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . G 3 1.021 -2.476 -20.291 1 70.21 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . G 3 -0.097 -1.903 -19.796 1 68.87 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . G 3 -0.125 -2.145 -18.485 1 68.46 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . G 3 -1.033 -1.816 -17.382 1 66.42 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . G 3 -2.147 -1.099 -17.624 1 66.1 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . G 3 -0.706 -2.252 -16.156 1 65.56 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . G 3 0.407 -2.967 -15.938 1 66.51 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . G 3 1.276 -3.296 -16.901 1 68.22 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . G 3 1.07 -2.917 -18.173 1 69.4 ? C4 ANP 401 A 1 HETATM 32 H HNB1 ANP . . . G 3 6.681 -1.225 -27.189 1 99.79 ? HNB1 ANP 401 A 1 HETATM 33 H "H5'1" ANP . . . G 3 2.604 -5.9 -23.19 1 54.96 ? "H5'1" ANP 401 A 1 HETATM 34 H "H5'2" ANP . . . G 3 1.727 -4.505 -22.551 1 54.96 ? "H5'2" ANP 401 A 1 HETATM 35 H H4' ANP . . . G 3 4.551 -5.273 -21.713 1 52.96 ? H4' ANP 401 A 1 HETATM 36 H H3' ANP . . . G 3 1.947 -6.341 -20.876 1 55.53 ? H3' ANP 401 A 1 HETATM 37 H HO3' ANP . . . G 3 3.506 -7.83 -20.947 1 64.06 ? HO3' ANP 401 A 1 HETATM 38 H H2' ANP . . . G 3 1.744 -5.492 -18.851 1 65.41 ? H2' ANP 401 A 1 HETATM 39 H HO2' ANP . . . G 3 3.651 -6.735 -18.206 1 80.29 ? HO2' ANP 401 A 1 HETATM 40 H H1' ANP . . . G 3 3.729 -3.484 -18.739 1 60.84 ? H1' ANP 401 A 1 HETATM 41 H H8 ANP . . . G 3 1.287 -2.436 -21.333 1 59.12 ? H8 ANP 401 A 1 HETATM 42 H HN61 ANP . . . G 3 -2.778 -0.867 -16.874 1 45.61 ? HN61 ANP 401 A 1 HETATM 43 H HN62 ANP . . . G 3 -2.347 -0.794 -18.565 1 45.61 ? HN62 ANP 401 A 1 HETATM 44 H H2 ANP . . . G 3 0.622 -3.295 -14.934 1 44.61 ? H2 ANP 401 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #