data_7DRP # _model_server_result.job_id 10mmz50o44mzQ9vYiCwqHg _model_server_result.datetime_utc '2025-02-05 16:56:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7drp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":402}' # _entry.id 7DRP # _exptl.entry_id 7DRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.31 _cell.angle_gamma 90 _cell.entry_id 7DRP _cell.length_a 89.587 _cell.length_b 91.656 _cell.length_c 98.198 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,S,T 1 1 C,D,E,M,N,O,P,Q,R,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 N N N ? 4 O N N ? 4 Q N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 E C GLY 23 F GLY 23 1_555 E N DV9 24 F DV9 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 E C DV9 24 F DV9 24 1_555 E N GLU 25 F GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.311 ? covale ? covale3 F C GLY 23 E GLY 23 1_555 F N DV9 24 E DV9 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale4 F C DV9 24 E DV9 24 1_555 F N GLU 25 E GLU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.296 ? metalc ? metalc1 A OD2 ASP 289 A ASP 269 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc2 A OE2 GLU 302 A GLU 282 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc3 A OE1 GLU 302 A GLU 282 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 A OE2 GLU 302 A GLU 282 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.813 ? metalc ? metalc5 A OD1 ASN 304 A ASN 284 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc6 G O2B ADP . A ADP 401 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc7 G O1A ADP . A ADP 401 1_555 H MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc8 G O1B ADP . A ADP 401 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc9 B OD2 ASP 289 B ASP 269 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc10 B OE2 GLU 302 B GLU 282 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc11 B OE1 GLU 302 B GLU 282 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc12 B OE2 GLU 302 B GLU 282 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc13 B OD1 ASN 304 B ASN 284 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc14 J O3B ADP . B ADP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.882 ? metalc ? metalc15 J O2A ADP . B ADP 401 1_555 K MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc16 J O2B ADP . B ADP 401 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc17 C OD2 ASP 289 C ASP 269 1_555 N MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc18 C OE1 GLU 302 C GLU 282 1_555 N MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc19 C OE2 GLU 302 C GLU 282 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc20 C OD1 ASN 304 C ASN 284 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc21 M O3B ADP . C ADP 401 1_555 N MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc22 M O2A ADP . C ADP 401 1_555 N MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc23 M O1B ADP . C ADP 401 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc24 D OD2 ASP 289 D ASP 269 1_555 Q MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc25 D OE2 GLU 302 D GLU 282 1_555 Q MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc26 D OE1 GLU 302 D GLU 282 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc27 D OE2 GLU 302 D GLU 282 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc28 P O1B ADP . D ADP 401 1_555 Q MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc29 P O1A ADP . D ADP 401 1_555 Q MG MG . D MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc30 P O3B ADP . D ADP 401 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DRP _atom_sites.fract_transf_matrix[1][1] 0.011162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01091 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 ADP A 1 401 401 ADP ADP . H 4 MG A 1 402 402 MG MG . I 4 MG A 1 403 403 MG MG . J 3 ADP B 1 401 401 ADP ADP . K 4 MG B 1 402 402 MG MG . L 4 MG B 1 403 403 MG MG . M 3 ADP C 1 401 401 ADP ADP . N 4 MG C 1 402 402 MG MG . O 4 MG C 1 403 403 MG MG . P 3 ADP D 1 401 401 ADP ADP . Q 4 MG D 1 402 402 MG MG . R 4 MG D 1 403 403 MG MG . S 5 HOH A 1 501 9 HOH HOH . S 5 HOH A 2 502 5 HOH HOH . S 5 HOH A 3 503 3 HOH HOH . S 5 HOH A 4 504 1 HOH HOH . S 5 HOH A 5 505 8 HOH HOH . S 5 HOH A 6 506 2 HOH HOH . T 5 HOH B 1 501 10 HOH HOH . U 5 HOH C 1 501 11 HOH HOH . U 5 HOH C 2 502 12 HOH HOH . V 5 HOH D 1 501 7 HOH HOH . V 5 HOH D 2 502 14 HOH HOH . V 5 HOH D 3 503 6 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 4 _atom_site.Cartn_x -0.478 _atom_site.Cartn_y 17.941 _atom_site.Cartn_z -59.445 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 68.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 45 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 872 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #