data_7DRT # _model_server_result.job_id LUuMJPHHRRiCQ3Zjpi4Yzg _model_server_result.datetime_utc '2025-03-06 03:41:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7drt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":603}' # _entry.id 7DRT # _exptl.entry_id 7DRT _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 787.121 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 H N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 H 1 NAG H 1 NAG 3 n C NAG 2 H 2 NAG H 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 42 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf2 A SG CYS 77 A CYS 77 1_555 A SG CYS 88 A CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 138 A CYS 138 1_555 A SG CYS 155 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? disulf ? disulf4 A SG CYS 203 A CYS 203 1_555 A SG CYS 217 A CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 A SG CYS 205 A CYS 205 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 A SG CYS 281 A CYS 281 1_555 A SG CYS 312 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf7 A SG CYS 297 A CYS 297 1_555 A SG CYS 307 A CYS 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf8 A SG CYS 311 A CYS 311 1_555 A SG CYS 351 A CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf9 A SG CYS 327 A CYS 327 1_555 A SG CYS 342 A CYS 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 A SG CYS 329 A CYS 329 1_555 A SG CYS 339 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf11 A SG CYS 334 A CYS 334 1_555 A SG CYS 335 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? disulf ? disulf12 B SG CYS 50 B CYS 50 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf13 B SG CYS 162 B CYS 162 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? covale ? covale1 C O4 NAG . H NAG 1 1_555 C C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.463 ? # _chem_comp.formula 'C44 H85 N O8 P 1' _chem_comp.formula_weight 787.121 _chem_comp.id PCW _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (Z,Z)-4-HYDROXY-N,N,N-TRIMETHYL-10-OXO-7-[(1-OXO-9-OCTADECENYL)OXY]-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-18-EN-1-AMINIUM-4-OXIDE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PCW sing 481 n n C1 O3P PCW sing 482 n n C1 H11 PCW sing 483 n n C1 H12 PCW sing 484 n n C2 C3 PCW sing 485 n n C2 O2 PCW sing 486 n n C2 H2 PCW sing 487 n n C3 O3 PCW sing 488 n n C3 H31 PCW sing 489 n n C3 H32 PCW sing 490 n n C4 C5 PCW sing 491 n n C4 O4P PCW sing 492 n n C4 H41 PCW sing 493 n n C4 H42 PCW sing 494 n n C5 N PCW sing 495 n n C5 H51 PCW sing 496 n n C5 H52 PCW sing 497 n n C6 N PCW sing 498 n n C6 H61 PCW sing 499 n n C6 H62 PCW sing 500 n n C6 H63 PCW sing 501 n n C7 N PCW sing 502 n n C7 H71 PCW sing 503 n n C7 H72 PCW sing 504 n n C7 H73 PCW sing 505 n n C8 N PCW sing 506 n n C8 H81 PCW sing 507 n n C8 H82 PCW sing 508 n n C8 H83 PCW sing 509 n n C11 C12 PCW sing 510 n n C11 O3 PCW sing 511 n n C11 O11 PCW doub 512 n n C12 C13 PCW sing 513 n n C12 H121 PCW sing 514 n n C12 H122 PCW sing 515 n n C13 C14 PCW sing 516 n n C13 H131 PCW sing 517 n n C13 H132 PCW sing 518 n n C14 C15 PCW sing 519 n n C14 H141 PCW sing 520 n n C14 H142 PCW sing 521 n n C15 C16 PCW sing 522 n n C15 H151 PCW sing 523 n n C15 H152 PCW sing 524 n n C16 C17 PCW sing 525 n n C16 H161 PCW sing 526 n n C16 H162 PCW sing 527 n n C17 C18 PCW sing 528 n n C17 H171 PCW sing 529 n n C17 H172 PCW sing 530 n n C18 C19 PCW sing 531 n n C18 H181 PCW sing 532 n n C18 H182 PCW sing 533 n n C19 C20 PCW doub 534 z n C19 H19 PCW sing 535 n n C20 C21 PCW sing 536 n n C20 H20 PCW sing 537 n n C21 C22 PCW sing 538 n n C21 H211 PCW sing 539 n n C21 H212 PCW sing 540 n n C22 C23 PCW sing 541 n n C22 H221 PCW sing 542 n n C22 H222 PCW sing 543 n n C23 C24 PCW sing 544 n n C23 H231 PCW sing 545 n n C23 H232 PCW sing 546 n n C24 C25 PCW sing 547 n n C24 H241 PCW sing 548 n n C24 H242 PCW sing 549 n n C25 C26 PCW sing 550 n n C25 H251 PCW sing 551 n n C25 H252 PCW sing 552 n n C26 C27 PCW sing 553 n n C26 H261 PCW sing 554 n n C26 H262 PCW sing 555 n n C27 C28 PCW sing 556 n n C27 H271 PCW sing 557 n n C27 H272 PCW sing 558 n n C28 H281 PCW sing 559 n n C28 H282 PCW sing 560 n n C28 H283 PCW sing 561 n n C31 C32 PCW sing 562 n n C31 O2 PCW sing 563 n n C31 O31 PCW doub 564 n n C32 C33 PCW sing 565 n n C32 H321 PCW sing 566 n n C32 H322 PCW sing 567 n n C33 C34 PCW sing 568 n n C33 H331 PCW sing 569 n n C33 H332 PCW sing 570 n n C34 C35 PCW sing 571 n n C34 H341 PCW sing 572 n n C34 H342 PCW sing 573 n n C35 C36 PCW sing 574 n n C35 H351 PCW sing 575 n n C35 H352 PCW sing 576 n n C36 C37 PCW sing 577 n n C36 H361 PCW sing 578 n n C36 H362 PCW sing 579 n n C37 C38 PCW sing 580 n n C37 H371 PCW sing 581 n n C37 H372 PCW sing 582 n n C38 C39 PCW sing 583 n n C38 H381 PCW sing 584 n n C38 H382 PCW sing 585 n n C39 C40 PCW doub 586 z n C39 H39 PCW sing 587 n n C40 C41 PCW sing 588 n n C40 H40 PCW sing 589 n n C41 C42 PCW sing 590 n n C41 H411 PCW sing 591 n n C41 H412 PCW sing 592 n n C42 C43 PCW sing 593 n n C42 H421 PCW sing 594 n n C42 H422 PCW sing 595 n n C43 C44 PCW sing 596 n n C43 H431 PCW sing 597 n n C43 H432 PCW sing 598 n n C44 C45 PCW sing 599 n n C44 H441 PCW sing 600 n n C44 H442 PCW sing 601 n n C45 C46 PCW sing 602 n n C45 H451 PCW sing 603 n n C45 H452 PCW sing 604 n n C46 C47 PCW sing 605 n n C46 H461 PCW sing 606 n n C46 H462 PCW sing 607 n n C47 C48 PCW sing 608 n n C47 H471 PCW sing 609 n n C47 H472 PCW sing 610 n n C48 H481 PCW sing 611 n n C48 H482 PCW sing 612 n n C48 H483 PCW sing 613 n n O1P P PCW sing 614 n n O1P H1P PCW sing 615 n n O2P P PCW doub 616 n n O3P P PCW sing 617 n n O4P P PCW sing 618 n n # _atom_sites.entry_id 7DRT _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PAM A 1 501 501 PAM PAM . E 5 PCW A 1 502 503 PCW PCW . F 6 CLR B 1 601 502 CLR CLR . G 7 LPE B 1 602 504 LPE LPE . H 5 PCW B 1 603 505 PCW PCW . I 8 HOH A 1 601 7 HOH HOH . I 8 HOH A 2 602 9 HOH HOH . I 8 HOH A 3 603 5 HOH HOH . I 8 HOH A 4 604 3 HOH HOH . I 8 HOH A 5 605 11 HOH HOH . J 8 HOH B 1 701 10 HOH HOH . J 8 HOH B 2 702 12 HOH HOH . J 8 HOH B 3 703 2 HOH HOH . J 8 HOH B 4 704 8 HOH HOH . J 8 HOH B 5 705 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PCW . . . H 5 145.965 137.897 129.941 1 20 ? C1 PCW 603 B 1 HETATM 2 C C2 PCW . . . H 5 147.215 138.293 130.692 1 20 ? C2 PCW 603 B 1 HETATM 3 C C3 PCW . . . H 5 146.845 139.179 131.864 1 20 ? C3 PCW 603 B 1 HETATM 4 C C4 PCW . . . H 5 141.869 139.259 129.925 1 20 ? C4 PCW 603 B 1 HETATM 5 C C5 PCW . . . H 5 141.316 139.025 131.327 1 20 ? C5 PCW 603 B 1 HETATM 6 C C6 PCW . . . H 5 140.875 141.372 131.346 1 20 ? C6 PCW 603 B 1 HETATM 7 C C7 PCW . . . H 5 140.345 140.093 133.219 1 20 ? C7 PCW 603 B 1 HETATM 8 C C8 PCW . . . H 5 142.616 140.464 132.732 1 20 ? C8 PCW 603 B 1 HETATM 9 C C11 PCW . . . H 5 146.546 138.441 134.186 1 20 ? C11 PCW 603 B 1 HETATM 10 C C12 PCW . . . H 5 145.983 137.425 135.137 1 20 ? C12 PCW 603 B 1 HETATM 11 C C13 PCW . . . H 5 146.99 137.106 136.229 1 20 ? C13 PCW 603 B 1 HETATM 12 C C14 PCW . . . H 5 146.697 135.729 136.795 1 20 ? C14 PCW 603 B 1 HETATM 13 C C15 PCW . . . H 5 147.883 135.277 137.616 1 20 ? C15 PCW 603 B 1 HETATM 14 C C16 PCW . . . H 5 147.744 133.836 138.061 1 20 ? C16 PCW 603 B 1 HETATM 15 C C17 PCW . . . H 5 148.707 133.61 139.211 1 20 ? C17 PCW 603 B 1 HETATM 16 C C18 PCW . . . H 5 148.755 132.146 139.592 1 20 ? C18 PCW 603 B 1 HETATM 17 C C19 PCW . . . H 5 149.324 132.059 140.979 1 20 ? C19 PCW 603 B 1 HETATM 18 C C20 PCW . . . H 5 150.028 130.993 141.333 1 20 ? C20 PCW 603 B 1 HETATM 19 C C21 PCW . . . H 5 150.264 129.872 140.353 1 20 ? C21 PCW 603 B 1 HETATM 20 C C31 PCW . . . H 5 148.988 136.719 130.425 1 20 ? C31 PCW 603 B 1 HETATM 21 C C32 PCW . . . H 5 149.932 135.695 130.973 1 20 ? C32 PCW 603 B 1 HETATM 22 C C33 PCW . . . H 5 150.349 136.043 132.385 1 20 ? C33 PCW 603 B 1 HETATM 23 C C34 PCW . . . H 5 151.346 134.976 132.783 1 20 ? C34 PCW 603 B 1 HETATM 24 C C35 PCW . . . H 5 151.28 134.663 134.26 1 20 ? C35 PCW 603 B 1 HETATM 25 C C36 PCW . . . H 5 152.206 133.5 134.576 1 20 ? C36 PCW 603 B 1 HETATM 26 C C37 PCW . . . H 5 152.354 133.402 136.077 1 20 ? C37 PCW 603 B 1 HETATM 27 C C38 PCW . . . H 5 153.451 132.428 136.448 1 20 ? C38 PCW 603 B 1 HETATM 28 C C39 PCW . . . H 5 153.849 132.744 137.861 1 20 ? C39 PCW 603 B 1 HETATM 29 C C40 PCW . . . H 5 154.152 131.773 138.705 1 20 ? C40 PCW 603 B 1 HETATM 30 C C41 PCW . . . H 5 154.106 130.337 138.264 1 20 ? C41 PCW 603 B 1 HETATM 31 C C42 PCW . . . H 5 154.653 129.473 139.391 1 20 ? C42 PCW 603 B 1 HETATM 32 N N PCW . . . H 5 141.308 140.237 132.143 1 20 ? N PCW 603 B 1 HETATM 33 O O2 PCW . . . H 5 147.838 137.127 131.196 1 20 ? O2 PCW 603 B 1 HETATM 34 O O3 PCW . . . H 5 146.107 138.44 132.814 1 20 ? O3 PCW 603 B 1 HETATM 35 O O11 PCW . . . H 5 147.354 139.26 134.551 1 20 ? O11 PCW 603 B 1 HETATM 36 O O31 PCW . . . H 5 149.18 137.18 129.323 1 20 ? O31 PCW 603 B 1 HETATM 37 O O1P PCW . . . H 5 143.979 137.825 127.621 1 20 ? O1P PCW 603 B 1 HETATM 38 O O2P PCW . . . H 5 143.842 140.37 127.995 1 20 ? O2P PCW 603 B 1 HETATM 39 O O3P PCW . . . H 5 145.56 139.007 129.17 1 20 ? O3P PCW 603 B 1 HETATM 40 O O4P PCW . . . H 5 143.201 138.771 129.827 1 20 ? O4P PCW 603 B 1 HETATM 41 P P PCW . . . H 5 144.106 139.005 128.531 1 20 ? P PCW 603 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 41 #