data_7DS7 # _model_server_result.job_id wi1lNXbFaTiZ4wfqq0CG-A _model_server_result.datetime_utc '2024-12-04 18:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ds7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7DS7 # _exptl.entry_id 7DS7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7DS7 _cell.length_a 109.412 _cell.length_b 109.412 _cell.length_c 35.137 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DS7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 222 A CYS 238 1_555 A SG CYS 267 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 259 A CYS 275 1_555 A SG CYS 276 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 7DS7 _atom_sites.fract_transf_matrix[1][1] 0.00914 _atom_sites.fract_transf_matrix[1][2] 0.005277 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010554 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 301 1 IMD IMD . C 3 GOL A 1 302 2 GOL GOL . D 4 CIT A 1 303 3 CIT CIT . E 5 HOH A 1 401 110 HOH HOH . E 5 HOH A 2 402 72 HOH HOH . E 5 HOH A 3 403 7 HOH HOH . E 5 HOH A 4 404 64 HOH HOH . E 5 HOH A 5 405 28 HOH HOH . E 5 HOH A 6 406 101 HOH HOH . E 5 HOH A 7 407 26 HOH HOH . E 5 HOH A 8 408 85 HOH HOH . E 5 HOH A 9 409 16 HOH HOH . E 5 HOH A 10 410 100 HOH HOH . E 5 HOH A 11 411 34 HOH HOH . E 5 HOH A 12 412 23 HOH HOH . E 5 HOH A 13 413 39 HOH HOH . E 5 HOH A 14 414 22 HOH HOH . E 5 HOH A 15 415 74 HOH HOH . E 5 HOH A 16 416 86 HOH HOH . E 5 HOH A 17 417 79 HOH HOH . E 5 HOH A 18 418 89 HOH HOH . E 5 HOH A 19 419 69 HOH HOH . E 5 HOH A 20 420 98 HOH HOH . E 5 HOH A 21 421 29 HOH HOH . E 5 HOH A 22 422 14 HOH HOH . E 5 HOH A 23 423 63 HOH HOH . E 5 HOH A 24 424 58 HOH HOH . E 5 HOH A 25 425 53 HOH HOH . E 5 HOH A 26 426 76 HOH HOH . E 5 HOH A 27 427 102 HOH HOH . E 5 HOH A 28 428 36 HOH HOH . E 5 HOH A 29 429 3 HOH HOH . E 5 HOH A 30 430 55 HOH HOH . E 5 HOH A 31 431 52 HOH HOH . E 5 HOH A 32 432 35 HOH HOH . E 5 HOH A 33 433 13 HOH HOH . E 5 HOH A 34 434 68 HOH HOH . E 5 HOH A 35 435 59 HOH HOH . E 5 HOH A 36 436 8 HOH HOH . E 5 HOH A 37 437 32 HOH HOH . E 5 HOH A 38 438 33 HOH HOH . E 5 HOH A 39 439 15 HOH HOH . E 5 HOH A 40 440 104 HOH HOH . E 5 HOH A 41 441 95 HOH HOH . E 5 HOH A 42 442 19 HOH HOH . E 5 HOH A 43 443 17 HOH HOH . E 5 HOH A 44 444 56 HOH HOH . E 5 HOH A 45 445 106 HOH HOH . E 5 HOH A 46 446 75 HOH HOH . E 5 HOH A 47 447 80 HOH HOH . E 5 HOH A 48 448 54 HOH HOH . E 5 HOH A 49 449 1 HOH HOH . E 5 HOH A 50 450 50 HOH HOH . E 5 HOH A 51 451 30 HOH HOH . E 5 HOH A 52 452 103 HOH HOH . E 5 HOH A 53 453 11 HOH HOH . E 5 HOH A 54 454 21 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 25 HOH HOH . E 5 HOH A 57 457 73 HOH HOH . E 5 HOH A 58 458 77 HOH HOH . E 5 HOH A 59 459 9 HOH HOH . E 5 HOH A 60 460 6 HOH HOH . E 5 HOH A 61 461 42 HOH HOH . E 5 HOH A 62 462 84 HOH HOH . E 5 HOH A 63 463 47 HOH HOH . E 5 HOH A 64 464 67 HOH HOH . E 5 HOH A 65 465 4 HOH HOH . E 5 HOH A 66 466 113 HOH HOH . E 5 HOH A 67 467 20 HOH HOH . E 5 HOH A 68 468 2 HOH HOH . E 5 HOH A 69 469 87 HOH HOH . E 5 HOH A 70 470 65 HOH HOH . E 5 HOH A 71 471 18 HOH HOH . E 5 HOH A 72 472 46 HOH HOH . E 5 HOH A 73 473 38 HOH HOH . E 5 HOH A 74 474 91 HOH HOH . E 5 HOH A 75 475 24 HOH HOH . E 5 HOH A 76 476 43 HOH HOH . E 5 HOH A 77 477 37 HOH HOH . E 5 HOH A 78 478 83 HOH HOH . E 5 HOH A 79 479 111 HOH HOH . E 5 HOH A 80 480 5 HOH HOH . E 5 HOH A 81 481 78 HOH HOH . E 5 HOH A 82 482 45 HOH HOH . E 5 HOH A 83 483 107 HOH HOH . E 5 HOH A 84 484 81 HOH HOH . E 5 HOH A 85 485 108 HOH HOH . E 5 HOH A 86 486 60 HOH HOH . E 5 HOH A 87 487 57 HOH HOH . E 5 HOH A 88 488 41 HOH HOH . E 5 HOH A 89 489 40 HOH HOH . E 5 HOH A 90 490 27 HOH HOH . E 5 HOH A 91 491 71 HOH HOH . E 5 HOH A 92 492 62 HOH HOH . E 5 HOH A 93 493 10 HOH HOH . E 5 HOH A 94 494 82 HOH HOH . E 5 HOH A 95 495 44 HOH HOH . E 5 HOH A 96 496 61 HOH HOH . E 5 HOH A 97 497 51 HOH HOH . E 5 HOH A 98 498 31 HOH HOH . E 5 HOH A 99 499 12 HOH HOH . E 5 HOH A 100 500 105 HOH HOH . E 5 HOH A 101 501 48 HOH HOH . E 5 HOH A 102 502 66 HOH HOH . E 5 HOH A 103 503 97 HOH HOH . E 5 HOH A 104 504 96 HOH HOH . E 5 HOH A 105 505 109 HOH HOH . E 5 HOH A 106 506 49 HOH HOH . E 5 HOH A 107 507 94 HOH HOH . E 5 HOH A 108 508 92 HOH HOH . E 5 HOH A 109 509 114 HOH HOH . E 5 HOH A 110 510 70 HOH HOH . E 5 HOH A 111 511 90 HOH HOH . E 5 HOH A 112 512 93 HOH HOH . E 5 HOH A 113 513 99 HOH HOH . E 5 HOH A 114 514 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 4 -26.232 8.716 5.439 1 36.46 ? C1 CIT 303 A 1 HETATM 2 O O1 CIT . . . D 4 -26.939 9.743 5.412 1 37.18 ? O1 CIT 303 A 1 HETATM 3 O O2 CIT . . . D 4 -24.985 8.731 5.482 1 36.66 ? O2 CIT 303 A 1 HETATM 4 C C2 CIT . . . D 4 -26.933 7.369 5.43 1 35.83 ? C2 CIT 303 A 1 HETATM 5 C C3 CIT . . . D 4 -27.024 6.666 6.791 1 35.32 ? C3 CIT 303 A 1 HETATM 6 O O7 CIT . . . D 4 -25.728 6.596 7.362 1 35.35 ? O7 CIT 303 A 1 HETATM 7 C C4 CIT . . . D 4 -27.948 7.477 7.714 1 35.82 ? C4 CIT 303 A 1 HETATM 8 C C5 CIT . . . D 4 -27.981 7.051 9.174 1 36.12 ? C5 CIT 303 A 1 HETATM 9 O O3 CIT . . . D 4 -26.946 6.563 9.678 1 36.46 ? O3 CIT 303 A 1 HETATM 10 O O4 CIT . . . D 4 -29.042 7.221 9.808 1 36.94 ? O4 CIT 303 A 1 HETATM 11 C C6 CIT . . . D 4 -27.599 5.237 6.587 1 33.94 ? C6 CIT 303 A 1 HETATM 12 O O5 CIT . . . D 4 -28.799 5.144 6.259 1 33.3 ? O5 CIT 303 A 1 HETATM 13 O O6 CIT . . . D 4 -26.823 4.274 6.753 1 32.42 ? O6 CIT 303 A 1 # _model_server_stats.io_time_ms 134 _model_server_stats.parse_time_ms 394 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 1051 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #