data_7DS7
#
_model_server_result.job_id            2xzGxaA7DYQ0mBF5PCDT2w 
_model_server_result.datetime_utc      '2024-11-07 12:45:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7ds7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":303}' 
#
_entry.id    7DS7 
#
_exptl.entry_id    7DS7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.124 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CITRIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7DS7 
_cell.length_a            109.412 
_cell.length_b            109.412 
_cell.length_c            35.137 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DS7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 222 A CYS 238 1_555 A SG CYS 267 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 259 A CYS 275 1_555 A SG CYS 276 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C6 H8 O7' 
_chem_comp.formula_weight    192.124 
_chem_comp.id                CIT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CITRIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 CIT doub 70 n n 
C1 O2 CIT sing 71 n n 
C1 C2 CIT sing 72 n n 
O2 HO2 CIT sing 73 n n 
C2 C3 CIT sing 74 n n 
C2 H21 CIT sing 75 n n 
C2 H22 CIT sing 76 n n 
C3 O7 CIT sing 77 n n 
C3 C4 CIT sing 78 n n 
C3 C6 CIT sing 79 n n 
O7 HO7 CIT sing 80 n n 
C4 C5 CIT sing 81 n n 
C4 H41 CIT sing 82 n n 
C4 H42 CIT sing 83 n n 
C5 O3 CIT doub 84 n n 
C5 O4 CIT sing 85 n n 
O4 HO4 CIT sing 86 n n 
C6 O5 CIT doub 87 n n 
C6 O6 CIT sing 88 n n 
O6 HO6 CIT sing 89 n n 
#
_atom_sites.entry_id                     7DS7 
_atom_sites.fract_transf_matrix[1][1]    0.00914 
_atom_sites.fract_transf_matrix[1][2]    0.005277 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010554 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.02846 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 IMD A 1 301 1 IMD IMD . 
C 3 GOL A 1 302 2 GOL GOL . 
D 4 CIT A 1 303 3 CIT CIT . 
E 5 HOH A 1 401 110 HOH HOH . 
E 5 HOH A 2 402 72 HOH HOH . 
E 5 HOH A 3 403 7 HOH HOH . 
E 5 HOH A 4 404 64 HOH HOH . 
E 5 HOH A 5 405 28 HOH HOH . 
E 5 HOH A 6 406 101 HOH HOH . 
E 5 HOH A 7 407 26 HOH HOH . 
E 5 HOH A 8 408 85 HOH HOH . 
E 5 HOH A 9 409 16 HOH HOH . 
E 5 HOH A 10 410 100 HOH HOH . 
E 5 HOH A 11 411 34 HOH HOH . 
E 5 HOH A 12 412 23 HOH HOH . 
E 5 HOH A 13 413 39 HOH HOH . 
E 5 HOH A 14 414 22 HOH HOH . 
E 5 HOH A 15 415 74 HOH HOH . 
E 5 HOH A 16 416 86 HOH HOH . 
E 5 HOH A 17 417 79 HOH HOH . 
E 5 HOH A 18 418 89 HOH HOH . 
E 5 HOH A 19 419 69 HOH HOH . 
E 5 HOH A 20 420 98 HOH HOH . 
E 5 HOH A 21 421 29 HOH HOH . 
E 5 HOH A 22 422 14 HOH HOH . 
E 5 HOH A 23 423 63 HOH HOH . 
E 5 HOH A 24 424 58 HOH HOH . 
E 5 HOH A 25 425 53 HOH HOH . 
E 5 HOH A 26 426 76 HOH HOH . 
E 5 HOH A 27 427 102 HOH HOH . 
E 5 HOH A 28 428 36 HOH HOH . 
E 5 HOH A 29 429 3 HOH HOH . 
E 5 HOH A 30 430 55 HOH HOH . 
E 5 HOH A 31 431 52 HOH HOH . 
E 5 HOH A 32 432 35 HOH HOH . 
E 5 HOH A 33 433 13 HOH HOH . 
E 5 HOH A 34 434 68 HOH HOH . 
E 5 HOH A 35 435 59 HOH HOH . 
E 5 HOH A 36 436 8 HOH HOH . 
E 5 HOH A 37 437 32 HOH HOH . 
E 5 HOH A 38 438 33 HOH HOH . 
E 5 HOH A 39 439 15 HOH HOH . 
E 5 HOH A 40 440 104 HOH HOH . 
E 5 HOH A 41 441 95 HOH HOH . 
E 5 HOH A 42 442 19 HOH HOH . 
E 5 HOH A 43 443 17 HOH HOH . 
E 5 HOH A 44 444 56 HOH HOH . 
E 5 HOH A 45 445 106 HOH HOH . 
E 5 HOH A 46 446 75 HOH HOH . 
E 5 HOH A 47 447 80 HOH HOH . 
E 5 HOH A 48 448 54 HOH HOH . 
E 5 HOH A 49 449 1 HOH HOH . 
E 5 HOH A 50 450 50 HOH HOH . 
E 5 HOH A 51 451 30 HOH HOH . 
E 5 HOH A 52 452 103 HOH HOH . 
E 5 HOH A 53 453 11 HOH HOH . 
E 5 HOH A 54 454 21 HOH HOH . 
E 5 HOH A 55 455 88 HOH HOH . 
E 5 HOH A 56 456 25 HOH HOH . 
E 5 HOH A 57 457 73 HOH HOH . 
E 5 HOH A 58 458 77 HOH HOH . 
E 5 HOH A 59 459 9 HOH HOH . 
E 5 HOH A 60 460 6 HOH HOH . 
E 5 HOH A 61 461 42 HOH HOH . 
E 5 HOH A 62 462 84 HOH HOH . 
E 5 HOH A 63 463 47 HOH HOH . 
E 5 HOH A 64 464 67 HOH HOH . 
E 5 HOH A 65 465 4 HOH HOH . 
E 5 HOH A 66 466 113 HOH HOH . 
E 5 HOH A 67 467 20 HOH HOH . 
E 5 HOH A 68 468 2 HOH HOH . 
E 5 HOH A 69 469 87 HOH HOH . 
E 5 HOH A 70 470 65 HOH HOH . 
E 5 HOH A 71 471 18 HOH HOH . 
E 5 HOH A 72 472 46 HOH HOH . 
E 5 HOH A 73 473 38 HOH HOH . 
E 5 HOH A 74 474 91 HOH HOH . 
E 5 HOH A 75 475 24 HOH HOH . 
E 5 HOH A 76 476 43 HOH HOH . 
E 5 HOH A 77 477 37 HOH HOH . 
E 5 HOH A 78 478 83 HOH HOH . 
E 5 HOH A 79 479 111 HOH HOH . 
E 5 HOH A 80 480 5 HOH HOH . 
E 5 HOH A 81 481 78 HOH HOH . 
E 5 HOH A 82 482 45 HOH HOH . 
E 5 HOH A 83 483 107 HOH HOH . 
E 5 HOH A 84 484 81 HOH HOH . 
E 5 HOH A 85 485 108 HOH HOH . 
E 5 HOH A 86 486 60 HOH HOH . 
E 5 HOH A 87 487 57 HOH HOH . 
E 5 HOH A 88 488 41 HOH HOH . 
E 5 HOH A 89 489 40 HOH HOH . 
E 5 HOH A 90 490 27 HOH HOH . 
E 5 HOH A 91 491 71 HOH HOH . 
E 5 HOH A 92 492 62 HOH HOH . 
E 5 HOH A 93 493 10 HOH HOH . 
E 5 HOH A 94 494 82 HOH HOH . 
E 5 HOH A 95 495 44 HOH HOH . 
E 5 HOH A 96 496 61 HOH HOH . 
E 5 HOH A 97 497 51 HOH HOH . 
E 5 HOH A 98 498 31 HOH HOH . 
E 5 HOH A 99 499 12 HOH HOH . 
E 5 HOH A 100 500 105 HOH HOH . 
E 5 HOH A 101 501 48 HOH HOH . 
E 5 HOH A 102 502 66 HOH HOH . 
E 5 HOH A 103 503 97 HOH HOH . 
E 5 HOH A 104 504 96 HOH HOH . 
E 5 HOH A 105 505 109 HOH HOH . 
E 5 HOH A 106 506 49 HOH HOH . 
E 5 HOH A 107 507 94 HOH HOH . 
E 5 HOH A 108 508 92 HOH HOH . 
E 5 HOH A 109 509 114 HOH HOH . 
E 5 HOH A 110 510 70 HOH HOH . 
E 5 HOH A 111 511 90 HOH HOH . 
E 5 HOH A 112 512 93 HOH HOH . 
E 5 HOH A 113 513 99 HOH HOH . 
E 5 HOH A 114 514 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CIT . . . D 4 -26.232 8.716 5.439 1 36.46 ? C1 CIT 303 A 1 
HETATM 2 O O1 CIT . . . D 4 -26.939 9.743 5.412 1 37.18 ? O1 CIT 303 A 1 
HETATM 3 O O2 CIT . . . D 4 -24.985 8.731 5.482 1 36.66 ? O2 CIT 303 A 1 
HETATM 4 C C2 CIT . . . D 4 -26.933 7.369 5.43 1 35.83 ? C2 CIT 303 A 1 
HETATM 5 C C3 CIT . . . D 4 -27.024 6.666 6.791 1 35.32 ? C3 CIT 303 A 1 
HETATM 6 O O7 CIT . . . D 4 -25.728 6.596 7.362 1 35.35 ? O7 CIT 303 A 1 
HETATM 7 C C4 CIT . . . D 4 -27.948 7.477 7.714 1 35.82 ? C4 CIT 303 A 1 
HETATM 8 C C5 CIT . . . D 4 -27.981 7.051 9.174 1 36.12 ? C5 CIT 303 A 1 
HETATM 9 O O3 CIT . . . D 4 -26.946 6.563 9.678 1 36.46 ? O3 CIT 303 A 1 
HETATM 10 O O4 CIT . . . D 4 -29.042 7.221 9.808 1 36.94 ? O4 CIT 303 A 1 
HETATM 11 C C6 CIT . . . D 4 -27.599 5.237 6.587 1 33.94 ? C6 CIT 303 A 1 
HETATM 12 O O5 CIT . . . D 4 -28.799 5.144 6.259 1 33.3 ? O5 CIT 303 A 1 
HETATM 13 O O6 CIT . . . D 4 -26.823 4.274 6.753 1 32.42 ? O6 CIT 303 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           13 
#