data_7DSJ # _model_server_result.job_id r-fv2ijlaoOPvazf6g-7gA _model_server_result.datetime_utc '2024-10-20 05:40:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7DSJ # _exptl.entry_id 7DSJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSJ _cell.length_a 78.328 _cell.length_b 89.488 _cell.length_c 110.299 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 123 A SER 121 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc2 A OE2 GLU 261 A GLU 259 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 C O1A PRP . A PRP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc4 C O3B PRP . A PRP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc5 D MG MG . A MG 402 1_555 G O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc7 B OG SER 123 B SER 121 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc8 B OE1 GLU 261 B GLU 259 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc9 B OE2 GLU 261 B GLU 259 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc10 E O2A PRP . B PRP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc11 E O2B PRP . B PRP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc12 F MG MG . B MG 402 1_555 H O HOH . B HOH 511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc13 F MG MG . B MG 402 1_555 H O HOH . B HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DSJ _atom_sites.fract_transf_matrix[1][1] 0.012767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRP A 1 401 1 PRP PRP . D 3 MG A 1 402 2 MG MG . E 2 PRP B 1 401 2 PRP PRP . F 3 MG B 1 402 1 MG MG . G 4 HOH A 1 501 89 HOH HOH . G 4 HOH A 2 502 115 HOH HOH . G 4 HOH A 3 503 133 HOH HOH . G 4 HOH A 4 504 111 HOH HOH . G 4 HOH A 5 505 9 HOH HOH . G 4 HOH A 6 506 15 HOH HOH . G 4 HOH A 7 507 32 HOH HOH . G 4 HOH A 8 508 33 HOH HOH . G 4 HOH A 9 509 131 HOH HOH . G 4 HOH A 10 510 92 HOH HOH . G 4 HOH A 11 511 38 HOH HOH . G 4 HOH A 12 512 91 HOH HOH . G 4 HOH A 13 513 26 HOH HOH . G 4 HOH A 14 514 69 HOH HOH . G 4 HOH A 15 515 56 HOH HOH . G 4 HOH A 16 516 20 HOH HOH . G 4 HOH A 17 517 14 HOH HOH . G 4 HOH A 18 518 37 HOH HOH . G 4 HOH A 19 519 72 HOH HOH . G 4 HOH A 20 520 3 HOH HOH . G 4 HOH A 21 521 106 HOH HOH . G 4 HOH A 22 522 85 HOH HOH . G 4 HOH A 23 523 64 HOH HOH . G 4 HOH A 24 524 105 HOH HOH . G 4 HOH A 25 525 87 HOH HOH . G 4 HOH A 26 526 8 HOH HOH . G 4 HOH A 27 527 73 HOH HOH . G 4 HOH A 28 528 23 HOH HOH . G 4 HOH A 29 529 29 HOH HOH . G 4 HOH A 30 530 21 HOH HOH . G 4 HOH A 31 531 43 HOH HOH . G 4 HOH A 32 532 35 HOH HOH . G 4 HOH A 33 533 101 HOH HOH . G 4 HOH A 34 534 51 HOH HOH . G 4 HOH A 35 535 28 HOH HOH . G 4 HOH A 36 536 12 HOH HOH . G 4 HOH A 37 537 94 HOH HOH . G 4 HOH A 38 538 17 HOH HOH . G 4 HOH A 39 539 42 HOH HOH . G 4 HOH A 40 540 102 HOH HOH . G 4 HOH A 41 541 70 HOH HOH . G 4 HOH A 42 542 114 HOH HOH . G 4 HOH A 43 543 130 HOH HOH . G 4 HOH A 44 544 110 HOH HOH . G 4 HOH A 45 545 86 HOH HOH . G 4 HOH A 46 546 25 HOH HOH . G 4 HOH A 47 547 71 HOH HOH . G 4 HOH A 48 548 76 HOH HOH . G 4 HOH A 49 549 99 HOH HOH . G 4 HOH A 50 550 118 HOH HOH . G 4 HOH A 51 551 68 HOH HOH . G 4 HOH A 52 552 132 HOH HOH . G 4 HOH A 53 553 77 HOH HOH . G 4 HOH A 54 554 117 HOH HOH . G 4 HOH A 55 555 113 HOH HOH . G 4 HOH A 56 556 128 HOH HOH . G 4 HOH A 57 557 103 HOH HOH . G 4 HOH A 58 558 109 HOH HOH . G 4 HOH A 59 559 116 HOH HOH . H 4 HOH B 1 501 52 HOH HOH . H 4 HOH B 2 502 93 HOH HOH . H 4 HOH B 3 503 55 HOH HOH . H 4 HOH B 4 504 125 HOH HOH . H 4 HOH B 5 505 16 HOH HOH . H 4 HOH B 6 506 81 HOH HOH . H 4 HOH B 7 507 10 HOH HOH . H 4 HOH B 8 508 65 HOH HOH . H 4 HOH B 9 509 34 HOH HOH . H 4 HOH B 10 510 57 HOH HOH . H 4 HOH B 11 511 108 HOH HOH . H 4 HOH B 12 512 63 HOH HOH . H 4 HOH B 13 513 27 HOH HOH . H 4 HOH B 14 514 78 HOH HOH . H 4 HOH B 15 515 62 HOH HOH . H 4 HOH B 16 516 95 HOH HOH . H 4 HOH B 17 517 96 HOH HOH . H 4 HOH B 18 518 100 HOH HOH . H 4 HOH B 19 519 7 HOH HOH . H 4 HOH B 20 520 13 HOH HOH . H 4 HOH B 21 521 19 HOH HOH . H 4 HOH B 22 522 39 HOH HOH . H 4 HOH B 23 523 107 HOH HOH . H 4 HOH B 24 524 84 HOH HOH . H 4 HOH B 25 525 98 HOH HOH . H 4 HOH B 26 526 47 HOH HOH . H 4 HOH B 27 527 6 HOH HOH . H 4 HOH B 28 528 36 HOH HOH . H 4 HOH B 29 529 5 HOH HOH . H 4 HOH B 30 530 18 HOH HOH . H 4 HOH B 31 531 61 HOH HOH . H 4 HOH B 32 532 40 HOH HOH . H 4 HOH B 33 533 45 HOH HOH . H 4 HOH B 34 534 30 HOH HOH . H 4 HOH B 35 535 1 HOH HOH . H 4 HOH B 36 536 80 HOH HOH . H 4 HOH B 37 537 83 HOH HOH . H 4 HOH B 38 538 4 HOH HOH . H 4 HOH B 39 539 67 HOH HOH . H 4 HOH B 40 540 22 HOH HOH . H 4 HOH B 41 541 82 HOH HOH . H 4 HOH B 42 542 50 HOH HOH . H 4 HOH B 43 543 59 HOH HOH . H 4 HOH B 44 544 53 HOH HOH . H 4 HOH B 45 545 31 HOH HOH . H 4 HOH B 46 546 60 HOH HOH . H 4 HOH B 47 547 88 HOH HOH . H 4 HOH B 48 548 24 HOH HOH . H 4 HOH B 49 549 2 HOH HOH . H 4 HOH B 50 550 97 HOH HOH . H 4 HOH B 51 551 104 HOH HOH . H 4 HOH B 52 552 11 HOH HOH . H 4 HOH B 53 553 48 HOH HOH . H 4 HOH B 54 554 46 HOH HOH . H 4 HOH B 55 555 74 HOH HOH . H 4 HOH B 56 556 124 HOH HOH . H 4 HOH B 57 557 90 HOH HOH . H 4 HOH B 58 558 66 HOH HOH . H 4 HOH B 59 559 58 HOH HOH . H 4 HOH B 60 560 123 HOH HOH . H 4 HOH B 61 561 75 HOH HOH . H 4 HOH B 62 562 41 HOH HOH . H 4 HOH B 63 563 54 HOH HOH . H 4 HOH B 64 564 127 HOH HOH . H 4 HOH B 65 565 121 HOH HOH . H 4 HOH B 66 566 112 HOH HOH . H 4 HOH B 67 567 79 HOH HOH . H 4 HOH B 68 568 44 HOH HOH . H 4 HOH B 69 569 129 HOH HOH . H 4 HOH B 70 570 119 HOH HOH . H 4 HOH B 71 571 126 HOH HOH . H 4 HOH B 72 572 120 HOH HOH . H 4 HOH B 73 573 49 HOH HOH . H 4 HOH B 74 574 122 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -4.532 _atom_site.Cartn_y 36.613 _atom_site.Cartn_z 13.916 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #