data_7DSK # _model_server_result.job_id 6lNepja5mcs0jZ8az5-rWg _model_server_result.datetime_utc '2025-03-25 12:55:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 7DSK # _exptl.entry_id 7DSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 347.407 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-7-(naphthalen-1-ylmethoxy)-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C22 H21 N O3' _chem_comp.formula_weight 347.407 _chem_comp.id HNX _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-7-(naphthalen-1-ylmethoxy)-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C03 HNX sing 274 n n C10 C09 HNX sing 275 n n N12 C08 HNX sing 276 n n C13 C14 HNX sing 277 n n C13 O11 HNX sing 278 n n C15 C20 HNX doub 279 n y C15 C14 HNX sing 280 n y C15 C16 HNX sing 281 n y C17 C16 HNX sing 282 n y C17 C18 HNX doub 283 n y C20 C21 HNX sing 284 n y C21 C22 HNX doub 285 n y C22 C23 HNX sing 286 n y C24 C08 HNX sing 287 n n C24 O25 HNX doub 288 n n C24 O26 HNX sing 289 n n C01 C02 HNX doub 290 n y C01 C06 HNX sing 291 n y C02 C03 HNX sing 292 n y C03 C04 HNX doub 293 n y C04 C05 HNX sing 294 n y C05 C06 HNX doub 295 n y C06 O11 HNX sing 296 n n C07 C08 HNX sing 297 n n C08 C09 HNX sing 298 n n C14 C19 HNX doub 299 n y C16 C23 HNX doub 300 n y C18 C19 HNX sing 301 n y C10 H1 HNX sing 302 n n C10 H2 HNX sing 303 n n N12 H3 HNX sing 304 n n N12 H4 HNX sing 305 n n C13 H6 HNX sing 306 n n C13 H7 HNX sing 307 n n C17 H8 HNX sing 308 n n C20 H9 HNX sing 309 n n C21 H10 HNX sing 310 n n C22 H11 HNX sing 311 n n C01 H12 HNX sing 312 n n C04 H14 HNX sing 313 n n C05 H15 HNX sing 314 n n C07 H16 HNX sing 315 n n C07 H17 HNX sing 316 n n C09 H19 HNX sing 317 n n C09 H20 HNX sing 318 n n C18 H21 HNX sing 319 n n C19 H22 HNX sing 320 n n C23 H23 HNX sing 321 n n O26 H24 HNX sing 322 n n C02 C07 HNX sing 323 n n # _atom_sites.entry_id 7DSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HNX B 1 601 601 HNX LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 710 HOH HOH . K 7 HOH B 2 702 708 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 703 HOH HOH . K 7 HOH B 5 705 702 HOH HOH . K 7 HOH B 6 706 701 HOH HOH . K 7 HOH B 7 707 711 HOH HOH . K 7 HOH B 8 708 704 HOH HOH . K 7 HOH B 9 709 712 HOH HOH . K 7 HOH B 10 710 707 HOH HOH . K 7 HOH B 11 711 705 HOH HOH . K 7 HOH B 12 712 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HNX . . . H 5 145.018 141.215 133.512 1 20 ? C10 HNX 601 B 1 HETATM 2 N N12 HNX . . . H 5 147.417 142.071 135.335 1 20 ? N12 HNX 601 B 1 HETATM 3 C C13 HNX . . . H 5 144.766 135.047 135.008 1 20 ? C13 HNX 601 B 1 HETATM 4 C C15 HNX . . . H 5 143.6 132.857 135.339 1 20 ? C15 HNX 601 B 1 HETATM 5 C C17 HNX . . . H 5 144.566 130.848 135.047 1 20 ? C17 HNX 601 B 1 HETATM 6 C C20 HNX . . . H 5 142.435 133.567 135.687 1 20 ? C20 HNX 601 B 1 HETATM 7 C C21 HNX . . . H 5 141.294 132.938 136.016 1 20 ? C21 HNX 601 B 1 HETATM 8 C C22 HNX . . . H 5 141.254 131.61 136.017 1 20 ? C22 HNX 601 B 1 HETATM 9 C C24 HNX . . . H 5 145.642 142.54 136.922 1 20 ? C24 HNX 601 B 1 HETATM 10 C C01 HNX . . . H 5 145.612 137.762 134.798 1 20 ? C01 HNX 601 B 1 HETATM 11 C C02 HNX . . . H 5 145.512 139.169 134.73 1 20 ? C02 HNX 601 B 1 HETATM 12 C C03 HNX . . . H 5 145.081 139.808 133.475 1 20 ? C03 HNX 601 B 1 HETATM 13 C C04 HNX . . . H 5 144.786 138.995 132.397 1 20 ? C04 HNX 601 B 1 HETATM 14 C C05 HNX . . . H 5 144.894 137.57 132.488 1 20 ? C05 HNX 601 B 1 HETATM 15 C C06 HNX . . . H 5 145.312 136.952 133.705 1 20 ? C06 HNX 601 B 1 HETATM 16 C C07 HNX . . . H 5 145.88 140.174 136.06 1 20 ? C07 HNX 601 B 1 HETATM 17 C C08 HNX . . . H 5 146.043 141.757 135.656 1 20 ? C08 HNX 601 B 1 HETATM 18 C C09 HNX . . . H 5 145.218 142.011 134.55 1 20 ? C09 HNX 601 B 1 HETATM 19 C C14 HNX . . . H 5 144.709 133.538 135.011 1 20 ? C14 HNX 601 B 1 HETATM 20 C C16 HNX . . . H 5 143.546 131.59 135.351 1 20 ? C16 HNX 601 B 1 HETATM 21 C C18 HNX . . . H 5 145.862 131.323 134.668 1 20 ? C18 HNX 601 B 1 HETATM 22 C C19 HNX . . . H 5 145.923 132.886 134.653 1 20 ? C19 HNX 601 B 1 HETATM 23 C C23 HNX . . . H 5 142.351 130.929 135.696 1 20 ? C23 HNX 601 B 1 HETATM 24 O O11 HNX . . . H 5 145.413 135.544 133.823 1 20 ? O11 HNX 601 B 1 HETATM 25 O O25 HNX . . . H 5 144.428 142.791 137.138 1 20 ? O25 HNX 601 B 1 HETATM 26 O O26 HNX . . . H 5 146.533 142.906 137.749 1 20 -1 O26 HNX 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #