data_7DSK # _model_server_result.job_id g-T7h4i858kGYnJxWM9pSw _model_server_result.datetime_utc '2025-03-25 13:27:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 7DSK # _exptl.entry_id 7DSK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 580 n n CBA CAB Y01 sing 581 n n CBA CAN Y01 sing 582 n n CAN CAJ Y01 sing 583 n n CAJ CAO Y01 sing 584 n n CAO CBB Y01 sing 585 n n CBB CAC Y01 sing 586 n n CBB CBE Y01 sing 587 n n CBE CAP Y01 sing 588 n n CBE CBI Y01 sing 589 n n CAP CAQ Y01 sing 590 n n CAQ CBG Y01 sing 591 n n CBG CBI Y01 sing 592 n n CBG CBD Y01 sing 593 n n CBI CAE Y01 sing 594 n n CBI CAU Y01 sing 595 n n CAU CAS Y01 sing 596 n n CAS CBF Y01 sing 597 n n CBF CBD Y01 sing 598 n n CBF CBH Y01 sing 599 n n CBD CAK Y01 sing 600 n n CAK CAI Y01 sing 601 n n CAI CAZ Y01 doub 602 n n CAZ CAV Y01 sing 603 n n CAZ CBH Y01 sing 604 n n CAV CBC Y01 sing 605 n n CBH CAD Y01 sing 606 n n CBH CAT Y01 sing 607 n n CAT CAR Y01 sing 608 n n CAR CBC Y01 sing 609 n n CBC OAW Y01 sing 610 n n OAW CAY Y01 sing 611 n n CAY OAG Y01 doub 612 n n CAY CAM Y01 sing 613 n n CAM CAL Y01 sing 614 n n CAL CAX Y01 sing 615 n n CAX OAH Y01 sing 616 n n CAX OAF Y01 doub 617 n n CAA HAA1 Y01 sing 618 n n CAA HAA2 Y01 sing 619 n n CAA HAA3 Y01 sing 620 n n CBA HBA Y01 sing 621 n n CAB HAB1 Y01 sing 622 n n CAB HAB2 Y01 sing 623 n n CAB HAB3 Y01 sing 624 n n CAN HAN1 Y01 sing 625 n n CAN HAN2 Y01 sing 626 n n CAJ HAJ1 Y01 sing 627 n n CAJ HAJ2 Y01 sing 628 n n CAO HAO1 Y01 sing 629 n n CAO HAO2 Y01 sing 630 n n CBB HBB Y01 sing 631 n n CAC HAC1 Y01 sing 632 n n CAC HAC2 Y01 sing 633 n n CAC HAC3 Y01 sing 634 n n CBE HBE Y01 sing 635 n n CAP HAP1 Y01 sing 636 n n CAP HAP2 Y01 sing 637 n n CAQ HAQ1 Y01 sing 638 n n CAQ HAQ2 Y01 sing 639 n n CBG HBG Y01 sing 640 n n CBD HBD Y01 sing 641 n n CAE HAE1 Y01 sing 642 n n CAE HAE2 Y01 sing 643 n n CAE HAE3 Y01 sing 644 n n CAU HAU1 Y01 sing 645 n n CAU HAU2 Y01 sing 646 n n CAS HAS1 Y01 sing 647 n n CAS HAS2 Y01 sing 648 n n CBF HBF Y01 sing 649 n n CAK HAK1 Y01 sing 650 n n CAK HAK2 Y01 sing 651 n n CAI HAI Y01 sing 652 n n CAV HAV1 Y01 sing 653 n n CAV HAV2 Y01 sing 654 n n CBC HBC Y01 sing 655 n n CAD HAD1 Y01 sing 656 n n CAD HAD2 Y01 sing 657 n n CAD HAD3 Y01 sing 658 n n CAT HAT1 Y01 sing 659 n n CAT HAT2 Y01 sing 660 n n CAR HAR1 Y01 sing 661 n n CAR HAR2 Y01 sing 662 n n CAM HAM1 Y01 sing 663 n n CAM HAM2 Y01 sing 664 n n CAL HAL1 Y01 sing 665 n n CAL HAL2 Y01 sing 666 n n OAH HAH Y01 sing 667 n n # _atom_sites.entry_id 7DSK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HNX B 1 601 601 HNX LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 710 HOH HOH . K 7 HOH B 2 702 708 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 703 HOH HOH . K 7 HOH B 5 705 702 HOH HOH . K 7 HOH B 6 706 701 HOH HOH . K 7 HOH B 7 707 711 HOH HOH . K 7 HOH B 8 708 704 HOH HOH . K 7 HOH B 9 709 712 HOH HOH . K 7 HOH B 10 710 707 HOH HOH . K 7 HOH B 11 711 705 HOH HOH . K 7 HOH B 12 712 709 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 6 138.324 160.131 130.651 1 93.42 ? CAA Y01 603 B 1 HETATM 2 C CBA Y01 . . . J 6 136.98 160.31 129.94 1 93.42 ? CBA Y01 603 B 1 HETATM 3 C CAB Y01 . . . J 6 137.068 159.789 128.495 1 93.42 ? CAB Y01 603 B 1 HETATM 4 C CAN Y01 . . . J 6 135.83 159.648 130.752 1 93.42 ? CAN Y01 603 B 1 HETATM 5 C CAJ Y01 . . . J 6 135.691 158.134 130.469 1 93.42 ? CAJ Y01 603 B 1 HETATM 6 C CAO Y01 . . . J 6 134.3 157.605 130.939 1 93.42 ? CAO Y01 603 B 1 HETATM 7 C CBB Y01 . . . J 6 133.156 158.202 130.069 1 93.42 ? CBB Y01 603 B 1 HETATM 8 C CAC Y01 . . . J 6 132.193 158.9 131.035 1 93.42 ? CAC Y01 603 B 1 HETATM 9 C CBE Y01 . . . J 6 132.477 157.14 129.175 1 93.42 ? CBE Y01 603 B 1 HETATM 10 C CAP Y01 . . . J 6 131.049 157.419 128.915 1 93.42 ? CAP Y01 603 B 1 HETATM 11 C CAQ Y01 . . . J 6 130.824 157.366 127.389 1 93.42 ? CAQ Y01 603 B 1 HETATM 12 C CBG Y01 . . . J 6 132.128 156.597 126.83 1 93.42 ? CBG Y01 603 B 1 HETATM 13 C CBI Y01 . . . J 6 133.153 156.923 127.728 1 93.42 ? CBI Y01 603 B 1 HETATM 14 C CAE Y01 . . . J 6 134.17 155.787 127.775 1 93.42 ? CAE Y01 603 B 1 HETATM 15 C CAU Y01 . . . J 6 133.827 158.342 127.31 1 93.42 ? CAU Y01 603 B 1 HETATM 16 C CAS Y01 . . . J 6 134.388 158.31 125.886 1 93.42 ? CAS Y01 603 B 1 HETATM 17 C CBF Y01 . . . J 6 133.304 158.044 124.912 1 93.42 ? CBF Y01 603 B 1 HETATM 18 C CBD Y01 . . . J 6 132.516 156.814 125.23 1 93.42 ? CBD Y01 603 B 1 HETATM 19 C CAK Y01 . . . J 6 131.232 156.792 124.356 1 93.42 ? CAK Y01 603 B 1 HETATM 20 C CAI Y01 . . . J 6 131.551 156.9 122.755 1 93.42 ? CAI Y01 603 B 1 HETATM 21 C CAZ Y01 . . . J 6 132.87 157.601 122.316 1 93.42 ? CAZ Y01 603 B 1 HETATM 22 C CAV Y01 . . . J 6 132.778 158.644 121.128 1 93.42 ? CAV Y01 603 B 1 HETATM 23 C CBH Y01 . . . J 6 133.907 157.991 123.388 1 93.42 ? CBH Y01 603 B 1 HETATM 24 C CAD Y01 . . . J 6 134.933 156.859 123.408 1 93.42 ? CAD Y01 603 B 1 HETATM 25 C CAT Y01 . . . J 6 134.734 159.298 122.978 1 93.42 ? CAT Y01 603 B 1 HETATM 26 C CAR Y01 . . . J 6 135.211 159.33 121.552 1 93.42 ? CAR Y01 603 B 1 HETATM 27 C CBC Y01 . . . J 6 134.146 158.82 120.497 1 93.42 ? CBC Y01 603 B 1 HETATM 28 O OAW Y01 . . . J 6 134.065 159.731 119.442 1 93.42 ? OAW Y01 603 B 1 HETATM 29 C CAY Y01 . . . J 6 133.652 159.152 118.207 1 93.42 ? CAY Y01 603 B 1 HETATM 30 O OAG Y01 . . . J 6 132.506 159.159 117.906 1 93.42 ? OAG Y01 603 B 1 HETATM 31 C CAM Y01 . . . J 6 134.691 158.517 117.261 1 93.42 ? CAM Y01 603 B 1 HETATM 32 C CAL Y01 . . . J 6 134.003 157.467 116.361 1 93.42 ? CAL Y01 603 B 1 HETATM 33 C CAX Y01 . . . J 6 134.176 157.86 114.889 1 93.42 ? CAX Y01 603 B 1 HETATM 34 O OAH Y01 . . . J 6 133.675 157.147 113.984 1 93.42 ? OAH Y01 603 B 1 HETATM 35 O OAF Y01 . . . J 6 134.819 158.897 114.587 1 93.42 ? OAF Y01 603 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #