data_7DSL # _model_server_result.job_id WnUrL-imSDIx2Jrpi90QCg _model_server_result.datetime_utc '2024-11-23 14:30:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":601}' # _entry.id 7DSL # _exptl.entry_id 7DSL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 373.444 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-2-azanyl-7-[(2-phenylphenyl)methoxy]-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C24 H23 N O3' _chem_comp.formula_weight 373.444 _chem_comp.id HO0 _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-2-azanyl-7-[(2-phenylphenyl)methoxy]-3,4-dihydro-1~{H}-naphthalene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C03 HO0 sing 274 n n C10 C09 HO0 sing 275 n n N12 C08 HO0 sing 276 n n C13 C14 HO0 sing 277 n n C13 O11 HO0 sing 278 n n C15 C20 HO0 sing 279 n n C15 C14 HO0 doub 280 n y C15 C16 HO0 sing 281 n y C17 C16 HO0 doub 282 n y C17 C18 HO0 sing 283 n y C20 C21 HO0 doub 284 n y C20 C25 HO0 sing 285 n y C21 C22 HO0 sing 286 n y C22 C23 HO0 doub 287 n y C24 C23 HO0 sing 288 n y C24 C25 HO0 doub 289 n y C26 C08 HO0 sing 290 n n C26 O27 HO0 doub 291 n n C26 O28 HO0 sing 292 n n C01 C02 HO0 doub 293 n y C01 C06 HO0 sing 294 n y C02 C03 HO0 sing 295 n y C03 C04 HO0 doub 296 n y C04 C05 HO0 sing 297 n y C05 C06 HO0 doub 298 n y C06 O11 HO0 sing 299 n n C07 C08 HO0 sing 300 n n C08 C09 HO0 sing 301 n n C14 C19 HO0 sing 302 n y C18 C19 HO0 doub 303 n y C10 H1 HO0 sing 304 n n N12 H2 HO0 sing 305 n n N12 H3 HO0 sing 306 n n C13 H5 HO0 sing 307 n n C13 H6 HO0 sing 308 n n C17 H7 HO0 sing 309 n n C21 H8 HO0 sing 310 n n C22 H9 HO0 sing 311 n n C24 H10 HO0 sing 312 n n C01 H11 HO0 sing 313 n n C04 H13 HO0 sing 314 n n C05 H14 HO0 sing 315 n n C07 H15 HO0 sing 316 n n C07 H16 HO0 sing 317 n n C09 H18 HO0 sing 318 n n C16 H19 HO0 sing 319 n n C18 H20 HO0 sing 320 n n C19 H21 HO0 sing 321 n n C23 H22 HO0 sing 322 n n C25 H23 HO0 sing 323 n n O28 H24 HO0 sing 324 n n C02 C07 HO0 sing 325 n n C10 H25 HO0 sing 326 n n C09 H4 HO0 sing 327 n n # _atom_sites.entry_id 7DSL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HO0 B 1 601 601 HO0 LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 702 HOH HOH . K 7 HOH B 2 702 708 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 701 HOH HOH . K 7 HOH B 5 705 707 HOH HOH . K 7 HOH B 6 706 703 HOH HOH . K 7 HOH B 7 707 704 HOH HOH . K 7 HOH B 8 708 705 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 HO0 . . . H 5 144.902 141.525 133.564 1 20 ? C10 HO0 601 B 1 HETATM 2 N N12 HO0 . . . H 5 147.449 141.883 135.474 1 20 ? N12 HO0 601 B 1 HETATM 3 C C13 HO0 . . . H 5 144.994 135.103 133.977 1 20 ? C13 HO0 601 B 1 HETATM 4 C C15 HO0 . . . H 5 145.896 133.48 135.696 1 20 ? C15 HO0 601 B 1 HETATM 5 C C17 HO0 . . . H 5 148.201 133.529 136.426 1 20 ? C17 HO0 601 B 1 HETATM 6 C C20 HO0 . . . H 5 144.462 132.859 135.754 1 20 ? C20 HO0 601 B 1 HETATM 7 C C21 HO0 . . . H 5 143.355 133.686 135.834 1 20 ? C21 HO0 601 B 1 HETATM 8 C C22 HO0 . . . H 5 142.07 133.126 135.88 1 20 ? C22 HO0 601 B 1 HETATM 9 C C24 HO0 . . . H 5 143.021 130.929 135.757 1 20 ? C24 HO0 601 B 1 HETATM 10 C C26 HO0 . . . H 5 145.699 142.513 137.047 1 20 ? C26 HO0 601 B 1 HETATM 11 C C01 HO0 . . . H 5 145.547 137.94 134.35 1 20 ? C01 HO0 601 B 1 HETATM 12 C C02 HO0 . . . H 5 145.403 139.305 134.505 1 20 ? C02 HO0 601 B 1 HETATM 13 C C03 HO0 . . . H 5 145.021 140.132 133.324 1 20 ? C03 HO0 601 B 1 HETATM 14 C C04 HO0 . . . H 5 144.825 139.509 132.108 1 20 ? C04 HO0 601 B 1 HETATM 15 C C05 HO0 . . . H 5 144.979 138.115 131.966 1 20 ? C05 HO0 601 B 1 HETATM 16 C C06 HO0 . . . H 5 145.341 137.317 133.091 1 20 ? C06 HO0 601 B 1 HETATM 17 C C07 HO0 . . . H 5 145.633 140.18 136.007 1 20 ? C07 HO0 601 B 1 HETATM 18 C C08 HO0 . . . H 5 146.007 141.759 135.752 1 20 ? C08 HO0 601 B 1 HETATM 19 C C09 HO0 . . . H 5 145.269 142.226 134.647 1 20 ? C09 HO0 601 B 1 HETATM 20 C C14 HO0 . . . H 5 146.142 134.556 134.832 1 20 ? C14 HO0 601 B 1 HETATM 21 C C16 HO0 . . . H 5 146.922 132.965 136.489 1 20 ? C16 HO0 601 B 1 HETATM 22 C C18 HO0 . . . H 5 148.45 134.605 135.565 1 20 ? C18 HO0 601 B 1 HETATM 23 C C19 HO0 . . . H 5 147.418 135.117 134.767 1 20 ? C19 HO0 601 B 1 HETATM 24 C C23 HO0 . . . H 5 141.912 131.755 135.841 1 20 ? C23 HO0 601 B 1 HETATM 25 C C25 HO0 . . . H 5 144.309 131.489 135.712 1 20 ? C25 HO0 601 B 1 HETATM 26 O O11 HO0 . . . H 5 145.498 135.926 132.934 1 20 ? O11 HO0 601 B 1 HETATM 27 O O27 HO0 . . . H 5 144.525 142.551 137.463 1 20 ? O27 HO0 601 B 1 HETATM 28 O O28 HO0 . . . H 5 146.624 143.085 137.686 1 20 -1 O28 HO0 601 B 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #