data_7DSL # _model_server_result.job_id MfdeTwlDAn-EbvHCvONuUA _model_server_result.datetime_utc '2024-11-05 08:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 7DSL # _exptl.entry_id 7DSL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7DSL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HO0 B 1 601 601 HO0 LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 702 HOH HOH . K 7 HOH B 2 702 708 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 701 HOH HOH . K 7 HOH B 5 705 707 HOH HOH . K 7 HOH B 6 706 703 HOH HOH . K 7 HOH B 7 707 704 HOH HOH . K 7 HOH B 8 708 705 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 6 135.064 159.532 133.75 1 100.14 ? CAA Y01 603 B 1 HETATM 2 C CBA Y01 . . . J 6 134.34 158.24 133.357 1 100.14 ? CBA Y01 603 B 1 HETATM 3 C CAB Y01 . . . J 6 134.637 157.115 134.37 1 100.14 ? CAB Y01 603 B 1 HETATM 4 C CAN Y01 . . . J 6 134.789 157.801 131.944 1 100.14 ? CAN Y01 603 B 1 HETATM 5 C CAJ Y01 . . . J 6 134.011 156.527 131.568 1 100.14 ? CAJ Y01 603 B 1 HETATM 6 C CAO Y01 . . . J 6 133.817 156.429 130.027 1 100.14 ? CAO Y01 603 B 1 HETATM 7 C CBB Y01 . . . J 6 132.636 157.277 129.457 1 100.14 ? CBB Y01 603 B 1 HETATM 8 C CAC Y01 . . . J 6 131.481 157.237 130.474 1 100.14 ? CAC Y01 603 B 1 HETATM 9 C CBE Y01 . . . J 6 132.084 156.81 128.094 1 100.14 ? CBE Y01 603 B 1 HETATM 10 C CAP Y01 . . . J 6 130.927 157.663 127.742 1 100.14 ? CAP Y01 603 B 1 HETATM 11 C CAQ Y01 . . . J 6 130.98 157.942 126.231 1 100.14 ? CAQ Y01 603 B 1 HETATM 12 C CBG Y01 . . . J 6 132.114 156.919 125.726 1 100.14 ? CBG Y01 603 B 1 HETATM 13 C CBI Y01 . . . J 6 133.016 156.831 126.781 1 100.14 ? CBI Y01 603 B 1 HETATM 14 C CAE Y01 . . . J 6 133.837 155.566 126.56 1 100.14 ? CAE Y01 603 B 1 HETATM 15 C CAU Y01 . . . J 6 133.922 158.174 126.818 1 100.14 ? CAU Y01 603 B 1 HETATM 16 C CAS Y01 . . . J 6 134.683 158.382 125.491 1 100.14 ? CAS Y01 603 B 1 HETATM 17 C CBF Y01 . . . J 6 133.804 158.384 124.286 1 100.14 ? CBF Y01 603 B 1 HETATM 18 C CBD Y01 . . . J 6 132.816 157.266 124.28 1 100.14 ? CBD Y01 603 B 1 HETATM 19 C CAK Y01 . . . J 6 131.696 157.574 123.262 1 100.14 ? CAK Y01 603 B 1 HETATM 20 C CAI Y01 . . . J 6 132.307 157.64 121.758 1 100.14 ? CAI Y01 603 B 1 HETATM 21 C CAZ Y01 . . . J 6 133.782 158.105 121.622 1 100.14 ? CAZ Y01 603 B 1 HETATM 22 C CAV Y01 . . . J 6 134.033 159.134 120.454 1 100.14 ? CAV Y01 603 B 1 HETATM 23 C CBH Y01 . . . J 6 134.655 158.354 122.877 1 100.14 ? CBH Y01 603 B 1 HETATM 24 C CAD Y01 . . . J 6 135.552 157.129 123.033 1 100.14 ? CAD Y01 603 B 1 HETATM 25 C CAT Y01 . . . J 6 135.666 159.581 122.657 1 100.14 ? CAT Y01 603 B 1 HETATM 26 C CAR Y01 . . . J 6 136.316 159.717 121.299 1 100.14 ? CAR Y01 603 B 1 HETATM 27 C CBC Y01 . . . J 6 135.497 159.11 120.089 1 100.14 ? CBC Y01 603 B 1 HETATM 28 O OAW Y01 . . . J 6 135.714 159.826 118.907 1 100.14 ? OAW Y01 603 B 1 HETATM 29 C CAY Y01 . . . J 6 135.207 159.215 117.713 1 100.14 ? CAY Y01 603 B 1 HETATM 30 O OAG Y01 . . . J 6 134.085 159.394 117.375 1 100.14 ? OAG Y01 603 B 1 HETATM 31 C CAM Y01 . . . J 6 136.103 158.323 116.831 1 100.14 ? CAM Y01 603 B 1 HETATM 32 C CAL Y01 . . . J 6 135.258 157.149 116.29 1 100.14 ? CAL Y01 603 B 1 HETATM 33 C CAX Y01 . . . J 6 134.799 157.403 114.847 1 100.14 ? CAX Y01 603 B 1 HETATM 34 O OAH Y01 . . . J 6 135.184 156.647 113.921 1 100.14 ? OAH Y01 603 B 1 HETATM 35 O OAF Y01 . . . J 6 134.032 158.363 114.584 1 100.14 ? OAF Y01 603 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #