data_7DSL # _model_server_result.job_id EuwCNFAesWva7eCoVPsE3Q _model_server_result.datetime_utc '2024-11-05 08:02:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 7DSL # _exptl.entry_id 7DSL _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 704.998 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSL _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C39 H77 O8 P' _chem_comp.formula_weight 704.998 _chem_comp.id 3PH _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PHOSPHATIDIC ACID' # _atom_sites.entry_id 7DSL _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HO0 B 1 601 601 HO0 LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 702 HOH HOH . K 7 HOH B 2 702 708 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 701 HOH HOH . K 7 HOH B 5 705 707 HOH HOH . K 7 HOH B 6 706 703 HOH HOH . K 7 HOH B 7 707 704 HOH HOH . K 7 HOH B 8 708 705 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O13 3PH . . . G 4 130.358 125.29 110.923 1 96.73 ? O13 3PH 701 A 1 HETATM 2 P P 3PH . . . G 4 129.035 125.067 111.605 1 96.73 ? P 3PH 701 A 1 HETATM 3 O O14 3PH . . . G 4 128.489 126.24 112.367 1 96.73 ? O14 3PH 701 A 1 HETATM 4 O O12 3PH . . . G 4 128.015 124.378 110.744 1 96.73 ? O12 3PH 701 A 1 HETATM 5 O O11 3PH . . . G 4 129.359 123.986 112.741 1 96.73 ? O11 3PH 701 A 1 HETATM 6 C C1 3PH . . . G 4 130.208 124.326 113.827 1 96.73 ? C1 3PH 701 A 1 HETATM 7 C C2 3PH . . . G 4 129.676 123.669 115.083 1 96.73 ? C2 3PH 701 A 1 HETATM 8 O O21 3PH . . . G 4 128.283 123.929 115.097 1 96.73 ? O21 3PH 701 A 1 HETATM 9 C C21 3PH . . . G 4 127.628 123.268 116.205 1 96.73 ? C21 3PH 701 A 1 HETATM 10 O O22 3PH . . . G 4 127.924 122.12 116.469 1 96.73 ? O22 3PH 701 A 1 HETATM 11 C C22 3PH . . . G 4 126.587 124.007 117.006 1 96.73 ? C22 3PH 701 A 1 HETATM 12 C C23 3PH . . . G 4 126.159 123.17 118.201 1 96.73 ? C23 3PH 701 A 1 HETATM 13 C C24 3PH . . . G 4 126.407 123.895 119.518 1 96.73 ? C24 3PH 701 A 1 HETATM 14 C C25 3PH . . . G 4 125.528 125.131 119.667 1 96.73 ? C25 3PH 701 A 1 HETATM 15 C C26 3PH . . . G 4 125.271 125.436 121.138 1 96.73 ? C26 3PH 701 A 1 HETATM 16 C C27 3PH . . . G 4 124.638 126.811 121.316 1 96.73 ? C27 3PH 701 A 1 HETATM 17 C C28 3PH . . . G 4 124.246 127.059 122.769 1 96.73 ? C28 3PH 701 A 1 HETATM 18 C C29 3PH . . . G 4 124.047 128.544 123.055 1 96.73 ? C29 3PH 701 A 1 HETATM 19 C C2A 3PH . . . G 4 123.001 129.166 122.136 1 96.73 ? C2A 3PH 701 A 1 HETATM 20 C C2B 3PH . . . G 4 122.813 130.642 122.462 1 96.73 ? C2B 3PH 701 A 1 HETATM 21 C C2C 3PH . . . G 4 121.637 131.249 121.705 1 96.73 ? C2C 3PH 701 A 1 HETATM 22 C C2D 3PH . . . G 4 121.935 131.384 120.218 1 96.73 ? C2D 3PH 701 A 1 HETATM 23 C C2E 3PH . . . G 4 120.746 132 119.494 1 96.73 ? C2E 3PH 701 A 1 HETATM 24 C C2F 3PH . . . G 4 120.487 133.414 119.995 1 96.73 ? C2F 3PH 701 A 1 HETATM 25 C C2G 3PH . . . G 4 119.225 134.004 119.378 1 96.73 ? C2G 3PH 701 A 1 HETATM 26 C C2H 3PH . . . G 4 118.006 133.151 119.708 1 96.73 ? C2H 3PH 701 A 1 HETATM 27 C C2I 3PH . . . G 4 116.723 133.828 119.279 1 96.73 ? C2I 3PH 701 A 1 HETATM 28 C C3 3PH . . . G 4 130.269 124.388 116.282 1 96.73 ? C3 3PH 701 A 1 HETATM 29 O O31 3PH . . . G 4 131.464 123.799 116.784 1 96.73 ? O31 3PH 701 A 1 HETATM 30 C C31 3PH . . . G 4 131.529 123.556 118.213 1 96.73 ? C31 3PH 701 A 1 HETATM 31 O O32 3PH . . . G 4 131.496 122.42 118.622 1 96.73 ? O32 3PH 701 A 1 HETATM 32 C C32 3PH . . . G 4 131.576 124.679 119.207 1 96.73 ? C32 3PH 701 A 1 HETATM 33 C C33 3PH . . . G 4 131.037 124.182 120.541 1 96.73 ? C33 3PH 701 A 1 HETATM 34 C C34 3PH . . . G 4 131.024 125.305 121.57 1 96.73 ? C34 3PH 701 A 1 HETATM 35 C C35 3PH . . . G 4 129.864 126.26 121.325 1 96.73 ? C35 3PH 701 A 1 HETATM 36 C C36 3PH . . . G 4 130.013 127.52 122.166 1 96.73 ? C36 3PH 701 A 1 HETATM 37 C C37 3PH . . . G 4 128.731 128.345 122.173 1 96.73 ? C37 3PH 701 A 1 HETATM 38 C C38 3PH . . . G 4 128.498 129.063 120.851 1 96.73 ? C38 3PH 701 A 1 HETATM 39 C C39 3PH . . . G 4 127.349 130.055 120.976 1 96.73 ? C39 3PH 701 A 1 HETATM 40 C C3A 3PH . . . G 4 126.725 130.312 119.615 1 96.73 ? C3A 3PH 701 A 1 HETATM 41 C C3B 3PH . . . G 4 125.677 131.412 119.667 1 96.73 ? C3B 3PH 701 A 1 HETATM 42 C C3C 3PH . . . G 4 126.309 132.793 119.568 1 96.73 ? C3C 3PH 701 A 1 HETATM 43 C C3D 3PH . . . G 4 125.241 133.849 119.31 1 96.73 ? C3D 3PH 701 A 1 HETATM 44 C C3E 3PH . . . G 4 125.748 135.262 119.569 1 96.73 ? C3E 3PH 701 A 1 HETATM 45 C C3F 3PH . . . G 4 125.068 135.875 120.786 1 96.73 ? C3F 3PH 701 A 1 HETATM 46 C C3G 3PH . . . G 4 125.665 135.354 122.093 1 96.73 ? C3G 3PH 701 A 1 HETATM 47 C C3H 3PH . . . G 4 124.669 134.515 122.887 1 96.73 ? C3H 3PH 701 A 1 HETATM 48 C C3I 3PH . . . G 4 125.371 133.662 123.919 1 96.73 ? C3I 3PH 701 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #