data_7DSN # _model_server_result.job_id PEAXmEK47lqZl9LCGwcfaw _model_server_result.datetime_utc '2024-11-26 05:41:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 7DSN # _exptl.entry_id 7DSN _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSN _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 225 A CYS 211 1_555 B SG CYS 184 B CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 587 n n CBA CAB Y01 sing 588 n n CBA CAN Y01 sing 589 n n CAN CAJ Y01 sing 590 n n CAJ CAO Y01 sing 591 n n CAO CBB Y01 sing 592 n n CBB CAC Y01 sing 593 n n CBB CBE Y01 sing 594 n n CBE CAP Y01 sing 595 n n CBE CBI Y01 sing 596 n n CAP CAQ Y01 sing 597 n n CAQ CBG Y01 sing 598 n n CBG CBI Y01 sing 599 n n CBG CBD Y01 sing 600 n n CBI CAE Y01 sing 601 n n CBI CAU Y01 sing 602 n n CAU CAS Y01 sing 603 n n CAS CBF Y01 sing 604 n n CBF CBD Y01 sing 605 n n CBF CBH Y01 sing 606 n n CBD CAK Y01 sing 607 n n CAK CAI Y01 sing 608 n n CAI CAZ Y01 doub 609 n n CAZ CAV Y01 sing 610 n n CAZ CBH Y01 sing 611 n n CAV CBC Y01 sing 612 n n CBH CAD Y01 sing 613 n n CBH CAT Y01 sing 614 n n CAT CAR Y01 sing 615 n n CAR CBC Y01 sing 616 n n CBC OAW Y01 sing 617 n n OAW CAY Y01 sing 618 n n CAY OAG Y01 doub 619 n n CAY CAM Y01 sing 620 n n CAM CAL Y01 sing 621 n n CAL CAX Y01 sing 622 n n CAX OAH Y01 sing 623 n n CAX OAF Y01 doub 624 n n CAA HAA1 Y01 sing 625 n n CAA HAA2 Y01 sing 626 n n CAA HAA3 Y01 sing 627 n n CBA HBA Y01 sing 628 n n CAB HAB1 Y01 sing 629 n n CAB HAB2 Y01 sing 630 n n CAB HAB3 Y01 sing 631 n n CAN HAN1 Y01 sing 632 n n CAN HAN2 Y01 sing 633 n n CAJ HAJ1 Y01 sing 634 n n CAJ HAJ2 Y01 sing 635 n n CAO HAO1 Y01 sing 636 n n CAO HAO2 Y01 sing 637 n n CBB HBB Y01 sing 638 n n CAC HAC1 Y01 sing 639 n n CAC HAC2 Y01 sing 640 n n CAC HAC3 Y01 sing 641 n n CBE HBE Y01 sing 642 n n CAP HAP1 Y01 sing 643 n n CAP HAP2 Y01 sing 644 n n CAQ HAQ1 Y01 sing 645 n n CAQ HAQ2 Y01 sing 646 n n CBG HBG Y01 sing 647 n n CBD HBD Y01 sing 648 n n CAE HAE1 Y01 sing 649 n n CAE HAE2 Y01 sing 650 n n CAE HAE3 Y01 sing 651 n n CAU HAU1 Y01 sing 652 n n CAU HAU2 Y01 sing 653 n n CAS HAS1 Y01 sing 654 n n CAS HAS2 Y01 sing 655 n n CBF HBF Y01 sing 656 n n CAK HAK1 Y01 sing 657 n n CAK HAK2 Y01 sing 658 n n CAI HAI Y01 sing 659 n n CAV HAV1 Y01 sing 660 n n CAV HAV2 Y01 sing 661 n n CBC HBC Y01 sing 662 n n CAD HAD1 Y01 sing 663 n n CAD HAD2 Y01 sing 664 n n CAD HAD3 Y01 sing 665 n n CAT HAT1 Y01 sing 666 n n CAT HAT2 Y01 sing 667 n n CAR HAR1 Y01 sing 668 n n CAR HAR2 Y01 sing 669 n n CAM HAM1 Y01 sing 670 n n CAM HAM2 Y01 sing 671 n n CAL HAL1 Y01 sing 672 n n CAL HAL2 Y01 sing 673 n n OAH HAH Y01 sing 674 n n # _atom_sites.entry_id 7DSN _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 3PH A 1 701 902 3PH 3PH . H 5 HO9 B 1 601 601 HO9 LIG . I 6 Y01 B 1 602 801 Y01 LIG . J 6 Y01 B 1 603 802 Y01 LIG . K 7 HOH B 1 701 711 HOH HOH . K 7 HOH B 2 702 705 HOH HOH . K 7 HOH B 3 703 706 HOH HOH . K 7 HOH B 4 704 704 HOH HOH . K 7 HOH B 5 705 717 HOH HOH . K 7 HOH B 6 706 702 HOH HOH . K 7 HOH B 7 707 716 HOH HOH . K 7 HOH B 8 708 708 HOH HOH . K 7 HOH B 9 709 710 HOH HOH . K 7 HOH B 10 710 701 HOH HOH . K 7 HOH B 11 711 714 HOH HOH . K 7 HOH B 12 712 712 HOH HOH . K 7 HOH B 13 713 713 HOH HOH . K 7 HOH B 14 714 709 HOH HOH . K 7 HOH B 15 715 707 HOH HOH . K 7 HOH B 16 716 703 HOH HOH . K 7 HOH B 17 717 715 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . I 6 121.496 136.867 123.239 1 67.59 ? CAA Y01 602 B 1 HETATM 2 C CBA Y01 . . . I 6 121.728 137.433 121.835 1 67.59 ? CBA Y01 602 B 1 HETATM 3 C CAB Y01 . . . I 6 121.519 136.335 120.778 1 67.59 ? CAB Y01 602 B 1 HETATM 4 C CAN Y01 . . . I 6 120.741 138.595 121.58 1 67.59 ? CAN Y01 602 B 1 HETATM 5 C CAJ Y01 . . . I 6 121.496 139.738 120.88 1 67.59 ? CAJ Y01 602 B 1 HETATM 6 C CAO Y01 . . . I 6 120.784 141.084 121.172 1 67.59 ? CAO Y01 602 B 1 HETATM 7 C CBB Y01 . . . I 6 121.805 142.225 120.952 1 67.59 ? CBB Y01 602 B 1 HETATM 8 C CAC Y01 . . . I 6 122.604 142.362 122.251 1 67.59 ? CAC Y01 602 B 1 HETATM 9 C CBE Y01 . . . I 6 121.045 143.478 120.514 1 67.59 ? CBE Y01 602 B 1 HETATM 10 C CAP Y01 . . . I 6 121.287 144.69 121.311 1 67.59 ? CAP Y01 602 B 1 HETATM 11 C CAQ Y01 . . . I 6 121.069 145.861 120.326 1 67.59 ? CAQ Y01 602 B 1 HETATM 12 C CBG Y01 . . . I 6 120.819 145.151 118.89 1 67.59 ? CBG Y01 602 B 1 HETATM 13 C CBI Y01 . . . I 6 121.415 143.908 119.024 1 67.59 ? CBI Y01 602 B 1 HETATM 14 C CAE Y01 . . . I 6 120.906 142.936 117.964 1 67.59 ? CAE Y01 602 B 1 HETATM 15 C CAU Y01 . . . I 6 123.03 144.058 118.999 1 67.59 ? CAU Y01 602 B 1 HETATM 16 C CAS Y01 . . . I 6 123.539 144.787 117.745 1 67.59 ? CAS Y01 602 B 1 HETATM 17 C CBF Y01 . . . I 6 122.826 146.07 117.47 1 67.59 ? CBF Y01 602 B 1 HETATM 18 C CBD Y01 . . . I 6 121.341 145.904 117.521 1 67.59 ? CBD Y01 602 B 1 HETATM 19 C CAK Y01 . . . I 6 120.629 147.27 117.35 1 67.59 ? CAK Y01 602 B 1 HETATM 20 C CAI Y01 . . . I 6 120.853 147.811 115.832 1 67.59 ? CAI Y01 602 B 1 HETATM 21 C CAZ Y01 . . . I 6 122.169 147.327 115.163 1 67.59 ? CAZ Y01 602 B 1 HETATM 22 C CAV Y01 . . . I 6 122.616 148.239 113.943 1 67.59 ? CAV Y01 602 B 1 HETATM 23 C CBH Y01 . . . I 6 123.312 146.876 116.105 1 67.59 ? CBH Y01 602 B 1 HETATM 24 C CAD Y01 . . . I 6 124.146 145.918 115.245 1 67.59 ? CAD Y01 602 B 1 HETATM 25 C CAT Y01 . . . I 6 124.313 148.072 116.434 1 67.59 ? CAT Y01 602 B 1 HETATM 26 C CAR Y01 . . . I 6 123.879 149.386 115.859 1 67.59 ? CAR Y01 602 B 1 HETATM 27 C CBC Y01 . . . I 6 123.632 149.306 114.301 1 67.59 ? CBC Y01 602 B 1 HETATM 28 O OAW Y01 . . . I 6 123.187 150.543 113.848 1 67.59 ? OAW Y01 602 B 1 HETATM 29 C CAY Y01 . . . I 6 124.254 151.429 113.526 1 67.59 ? CAY Y01 602 B 1 HETATM 30 O OAG Y01 . . . I 6 124.754 152.085 114.375 1 67.59 ? OAG Y01 602 B 1 HETATM 31 C CAM Y01 . . . I 6 124.765 151.534 112.075 1 67.59 ? CAM Y01 602 B 1 HETATM 32 C CAL Y01 . . . I 6 124.013 152.675 111.362 1 67.59 ? CAL Y01 602 B 1 HETATM 33 C CAX Y01 . . . I 6 124.994 153.795 111.003 1 67.59 ? CAX Y01 602 B 1 HETATM 34 O OAH Y01 . . . I 6 124.569 154.965 110.834 1 67.59 ? OAH Y01 602 B 1 HETATM 35 O OAF Y01 . . . I 6 126.219 153.542 110.877 1 67.59 ? OAF Y01 602 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #