data_7DSQ # _model_server_result.job_id ykm1WnV807pFPdfHH1zlVQ _model_server_result.datetime_utc '2025-02-05 05:56:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":601}' # _entry.id 7DSQ # _exptl.entry_id 7DSQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 432.982 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,5-DIIODOTYROSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 3 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 701 NAG 3 n C NAG 2 C 2 NAG A 702 NAG 3 n D NAG 1 D 1 NAG A 703 NAG 3 n D NAG 2 D 2 NAG A 704 NAG 3 n E NAG 1 E 1 NAG A 705 NAG 3 n E NAG 2 E 2 NAG A 706 NAG 3 n F NAG 1 F 1 NAG A 707 NAG 3 n F NAG 2 F 2 NAG A 708 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 380 A ASN 366 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale2 A ND2 ASN 396 A ASN 382 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale3 A ND2 ASN 439 A ASN 425 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 A ND2 ASN 521 A ASN 507 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.483 ? covale ? covale7 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C9 H9 I2 N O3' _chem_comp.formula_weight 432.982 _chem_comp.id TYI _chem_comp.mon_nstd_flag n _chem_comp.name 3,5-DIIODOTYROSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TYI sing 488 n n N H TYI sing 489 n n N H2 TYI sing 490 n n CA CB TYI sing 491 n n CA C TYI sing 492 n n CA HA TYI sing 493 n n CB CG TYI sing 494 n n CB HB2 TYI sing 495 n n CB HB3 TYI sing 496 n n CG CD1 TYI doub 497 n y CG CD2 TYI sing 498 n y CD1 CE1 TYI sing 499 n y CD1 HD1 TYI sing 500 n n CE1 CZ TYI doub 501 n y CE1 I1 TYI sing 502 n n CD2 CE2 TYI doub 503 n y CD2 HD2 TYI sing 504 n n CE2 CZ TYI sing 505 n y CE2 I2 TYI sing 506 n n CZ OH TYI sing 507 n n OH HH TYI sing 508 n n C O TYI doub 509 n n C OXT TYI sing 510 n n OXT HXT TYI sing 511 n n # _atom_sites.entry_id 7DSQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 TYI B 1 601 601 TYI LIG . H 5 Y01 B 1 602 801 Y01 LIG . I 5 Y01 B 1 603 802 Y01 LIG . J 6 3PH B 1 604 902 3PH 3PH . K 7 HOH B 1 701 707 HOH HOH . K 7 HOH B 2 702 701 HOH HOH . K 7 HOH B 3 703 713 HOH HOH . K 7 HOH B 4 704 712 HOH HOH . K 7 HOH B 5 705 705 HOH HOH . K 7 HOH B 6 706 711 HOH HOH . K 7 HOH B 7 707 710 HOH HOH . K 7 HOH B 8 708 706 HOH HOH . K 7 HOH B 9 709 703 HOH HOH . K 7 HOH B 10 710 704 HOH HOH . K 7 HOH B 11 711 708 HOH HOH . K 7 HOH B 12 712 709 HOH HOH . K 7 HOH B 13 713 702 HOH HOH . K 7 HOH B 14 714 715 HOH HOH . K 7 HOH B 15 715 714 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TYI . . . G 4 149.317 141.498 136.54 1 20 ? N TYI 601 B 1 HETATM 2 C CA TYI . . . G 4 147.916 141.907 136.418 1 20 ? CA TYI 601 B 1 HETATM 3 C CB TYI . . . G 4 147.045 140.682 136.615 1 20 ? CB TYI 601 B 1 HETATM 4 C CG TYI . . . G 4 146.987 139.873 135.337 1 20 ? CG TYI 601 B 1 HETATM 5 C CD1 TYI . . . G 4 147.461 138.563 135.308 1 20 ? CD1 TYI 601 B 1 HETATM 6 C CE1 TYI . . . G 4 147.403 137.827 134.152 1 20 ? CE1 TYI 601 B 1 HETATM 7 C CD2 TYI . . . G 4 146.479 140.434 134.192 1 20 ? CD2 TYI 601 B 1 HETATM 8 C CE2 TYI . . . G 4 146.44 139.707 133.02 1 20 ? CE2 TYI 601 B 1 HETATM 9 C CZ TYI . . . G 4 146.901 138.395 133.005 1 20 ? CZ TYI 601 B 1 HETATM 10 O OH TYI . . . G 4 146.855 137.614 131.783 1 20 ? OH TYI 601 B 1 HETATM 11 C C TYI . . . G 4 147.604 142.906 137.5 1 20 ? C TYI 601 B 1 HETATM 12 O O TYI . . . G 4 148.467 143.791 137.833 1 20 -1 O TYI 601 B 1 HETATM 13 O OXT TYI . . . G 4 146.448 142.864 138.097 1 20 ? OXT TYI 601 B 1 HETATM 14 I I1 TYI . . . G 4 148.166 135.83 134.214 1 20 ? I1 TYI 601 B 1 HETATM 15 I I2 TYI . . . G 4 145.666 140.5 131.274 1 20 ? I2 TYI 601 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #