data_7DSX
#
_model_server_result.job_id            T0FxfVdPdcfI2woikCgt4g 
_model_server_result.datetime_utc      '2024-10-19 16:36:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7dsx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":602}' 
#
_entry.id    7DSX 
#
_exptl.entry_id    7DSX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7DSX 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7DSX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C48 C47 PGT sing 271 n n 
C48 H481 PGT sing 272 n n 
C48 H482 PGT sing 273 n n 
C48 H483 PGT sing 274 n n 
C47 C46 PGT sing 275 n n 
C47 H471 PGT sing 276 n n 
C47 H472 PGT sing 277 n n 
C46 C45 PGT sing 278 n n 
C46 H461 PGT sing 279 n n 
C46 H462 PGT sing 280 n n 
C45 C44 PGT sing 281 n n 
C45 H451 PGT sing 282 n n 
C45 H452 PGT sing 283 n n 
C44 C43 PGT sing 284 n n 
C44 H441 PGT sing 285 n n 
C44 H442 PGT sing 286 n n 
C43 C42 PGT sing 287 n n 
C43 H431 PGT sing 288 n n 
C43 H432 PGT sing 289 n n 
C42 C41 PGT sing 290 n n 
C42 H421 PGT sing 291 n n 
C42 H422 PGT sing 292 n n 
C41 C40 PGT sing 293 n n 
C41 H411 PGT sing 294 n n 
C41 H412 PGT sing 295 n n 
C40 C39 PGT sing 296 n n 
C40 H401 PGT sing 297 n n 
C40 H402 PGT sing 298 n n 
C39 C38 PGT sing 299 n n 
C39 H391 PGT sing 300 n n 
C39 H392 PGT sing 301 n n 
C38 C37 PGT sing 302 n n 
C38 H381 PGT sing 303 n n 
C38 H382 PGT sing 304 n n 
C37 C36 PGT sing 305 n n 
C37 H371 PGT sing 306 n n 
C37 H372 PGT sing 307 n n 
C36 C35 PGT sing 308 n n 
C36 H361 PGT sing 309 n n 
C36 H362 PGT sing 310 n n 
C35 C34 PGT sing 311 n n 
C35 H351 PGT sing 312 n n 
C35 H352 PGT sing 313 n n 
C34 C33 PGT sing 314 n n 
C34 H341 PGT sing 315 n n 
C34 H342 PGT sing 316 n n 
C33 C32 PGT sing 317 n n 
C33 H331 PGT sing 318 n n 
C33 H332 PGT sing 319 n n 
C32 C31 PGT sing 320 n n 
C32 H321 PGT sing 321 n n 
C32 H322 PGT sing 322 n n 
C31 O31 PGT doub 323 n n 
C31 O2 PGT sing 324 n n 
O2 C2 PGT sing 325 n n 
C2 C1 PGT sing 326 n n 
C2 C3 PGT sing 327 n n 
C2 H2 PGT sing 328 n n 
C1 O3P PGT sing 329 n n 
C1 H11 PGT sing 330 n n 
C1 H12 PGT sing 331 n n 
O3P P PGT sing 332 n n 
P O1P PGT doub 333 n n 
P O2P PGT sing 334 n n 
P O4P PGT sing 335 n n 
O2P HO2P PGT sing 336 n n 
O4P C4 PGT sing 337 n n 
C4 C5 PGT sing 338 n n 
C4 H41 PGT sing 339 n n 
C4 H42 PGT sing 340 n n 
C5 O5 PGT sing 341 n n 
C5 C6 PGT sing 342 n n 
C5 H5 PGT sing 343 n n 
O5 HO5 PGT sing 344 n n 
C6 O6 PGT sing 345 n n 
C6 H61 PGT sing 346 n n 
C6 H62 PGT sing 347 n n 
O6 HO6 PGT sing 348 n n 
C3 O3 PGT sing 349 n n 
C3 H31 PGT sing 350 n n 
C3 H32 PGT sing 351 n n 
O3 C11 PGT sing 352 n n 
C11 O11 PGT doub 353 n n 
C11 C12 PGT sing 354 n n 
C12 C13 PGT sing 355 n n 
C12 H121 PGT sing 356 n n 
C12 H122 PGT sing 357 n n 
C13 C14 PGT sing 358 n n 
C13 H131 PGT sing 359 n n 
C13 H132 PGT sing 360 n n 
C14 C15 PGT sing 361 n n 
C14 H141 PGT sing 362 n n 
C14 H142 PGT sing 363 n n 
C15 C16 PGT sing 364 n n 
C15 H151 PGT sing 365 n n 
C15 H152 PGT sing 366 n n 
C16 C17 PGT sing 367 n n 
C16 H161 PGT sing 368 n n 
C16 H162 PGT sing 369 n n 
C17 C18 PGT sing 370 n n 
C17 H171 PGT sing 371 n n 
C17 H172 PGT sing 372 n n 
C18 C19 PGT sing 373 n n 
C18 H181 PGT sing 374 n n 
C18 H182 PGT sing 375 n n 
C19 C20 PGT sing 376 n n 
C19 H191 PGT sing 377 n n 
C19 H192 PGT sing 378 n n 
C20 C21 PGT sing 379 n n 
C20 H201 PGT sing 380 n n 
C20 H202 PGT sing 381 n n 
C21 C22 PGT sing 382 n n 
C21 H211 PGT sing 383 n n 
C21 H212 PGT sing 384 n n 
C22 C23 PGT sing 385 n n 
C22 H221 PGT sing 386 n n 
C22 H222 PGT sing 387 n n 
C23 C24 PGT sing 388 n n 
C23 H231 PGT sing 389 n n 
C23 H232 PGT sing 390 n n 
C24 C25 PGT sing 391 n n 
C24 H241 PGT sing 392 n n 
C24 H242 PGT sing 393 n n 
C25 C26 PGT sing 394 n n 
C25 H251 PGT sing 395 n n 
C25 H252 PGT sing 396 n n 
C26 H261 PGT sing 397 n n 
C26 H262 PGT sing 398 n n 
C26 H263 PGT sing 399 n n 
#
_atom_sites.entry_id                     7DSX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PGT B 1 1001 1001 PGT PGT . 
F 3 PGT B 1 1002 1002 PGT PGT . 
G 4 HG0 B 1 1003 1004 HG0 UNL . 
H 3 PGT B 1 1004 1003 PGT PGT . 
I 3 PGT A 1 601 1003 PGT PGT . 
J 3 PGT A 1 602 1001 PGT PGT . 
K 3 PGT A 1 603 1002 PGT PGT . 
L 4 HG0 A 1 604 1004 HG0 UNL . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . J 3 133.796 128.705 136.72 1 29.11 ? C48 PGT 602 A 1 
HETATM 2 C C47 PGT . . . J 3 134.677 127.59 136.171 1 29.11 ? C47 PGT 602 A 1 
HETATM 3 C C46 PGT . . . J 3 135.36 128.056 134.894 1 29.11 ? C46 PGT 602 A 1 
HETATM 4 C C45 PGT . . . J 3 135.94 126.832 134.197 1 29.11 ? C45 PGT 602 A 1 
HETATM 5 C C44 PGT . . . J 3 136.995 127.269 133.186 1 29.11 ? C44 PGT 602 A 1 
HETATM 6 C C43 PGT . . . J 3 136.544 126.878 131.786 1 29.11 ? C43 PGT 602 A 1 
HETATM 7 C C42 PGT . . . J 3 136.935 127.982 130.814 1 29.11 ? C42 PGT 602 A 1 
HETATM 8 C C41 PGT . . . J 3 136.541 127.558 129.405 1 29.11 ? C41 PGT 602 A 1 
HETATM 9 C C40 PGT . . . J 3 137.123 126.187 129.09 1 29.11 ? C40 PGT 602 A 1 
HETATM 10 C C39 PGT . . . J 3 137.187 126.04 127.579 1 29.11 ? C39 PGT 602 A 1 
HETATM 11 C C38 PGT . . . J 3 136.933 124.588 127.206 1 29.11 ? C38 PGT 602 A 1 
HETATM 12 C C37 PGT . . . J 3 137.172 124.453 125.713 1 29.11 ? C37 PGT 602 A 1 
HETATM 13 C C36 PGT . . . J 3 136.286 123.35 125.145 1 29.11 ? C36 PGT 602 A 1 
HETATM 14 C C35 PGT . . . J 3 136.759 123.027 123.734 1 29.11 ? C35 PGT 602 A 1 
HETATM 15 C C34 PGT . . . J 3 135.729 122.139 123.047 1 29.11 ? C34 PGT 602 A 1 
HETATM 16 C C33 PGT . . . J 3 134.972 122.964 122.01 1 29.11 ? C33 PGT 602 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#