data_7DSY # _model_server_result.job_id FtaKMOp_MalmCQseVkLvgQ _model_server_result.datetime_utc '2024-10-12 08:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 7DSY # _exptl.entry_id 7DSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.75 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-chloranyl-3-methylsulfinyl-6,7-dihydro-5H-2-benzothiophen-4-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DSY _cell.length_a 59.32 _cell.length_b 111.05 _cell.length_c 262.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C9 H9 Cl O2 S2' _chem_comp.formula_weight 248.75 _chem_comp.id HFX _chem_comp.mon_nstd_flag . _chem_comp.name 1-chloranyl-3-methylsulfinyl-6,7-dihydro-5H-2-benzothiophen-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 HFX sing 242 n n C7 C8 HFX sing 243 n n C6 C5 HFX sing 244 n n C5 C3 HFX sing 245 n n C8 O1 HFX doub 246 n n C8 C2 HFX sing 247 n n C3 C2 HFX sing 248 n y C3 C4 HFX doub 249 n y C2 C1 HFX doub 250 n y O2 S2 HFX doub 251 n n C4 CL1 HFX sing 252 n n C4 S1 HFX sing 253 n y C1 S1 HFX sing 254 n y C1 S2 HFX sing 255 n n S2 C9 HFX sing 256 n n C5 H1 HFX sing 257 n n C5 H2 HFX sing 258 n n C6 H3 HFX sing 259 n n C6 H4 HFX sing 260 n n C7 H5 HFX sing 261 n n C7 H6 HFX sing 262 n n C9 H7 HFX sing 263 n n C9 H8 HFX sing 264 n n C9 H9 HFX sing 265 n n # _atom_sites.entry_id 7DSY _atom_sites.fract_transf_matrix[1][1] 0.016858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009005 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 25A a 1 801 801 25A 25L . D 3 HFX a 1 802 901 HFX LIG . E 4 PO4 a 1 803 1 PO4 PO4 . F 2 25A b 1 801 801 25A 25L . G 3 HFX b 1 802 901 HFX LIG . H 5 HOH a 1 901 91 HOH HOH . H 5 HOH a 2 902 116 HOH HOH . H 5 HOH a 3 903 108 HOH HOH . H 5 HOH a 4 904 88 HOH HOH . H 5 HOH a 5 905 48 HOH HOH . H 5 HOH a 6 906 32 HOH HOH . H 5 HOH a 7 907 12 HOH HOH . H 5 HOH a 8 908 10 HOH HOH . H 5 HOH a 9 909 47 HOH HOH . H 5 HOH a 10 910 50 HOH HOH . H 5 HOH a 11 911 83 HOH HOH . H 5 HOH a 12 912 110 HOH HOH . H 5 HOH a 13 913 56 HOH HOH . H 5 HOH a 14 914 24 HOH HOH . H 5 HOH a 15 915 81 HOH HOH . H 5 HOH a 16 916 36 HOH HOH . H 5 HOH a 17 917 80 HOH HOH . H 5 HOH a 18 918 112 HOH HOH . H 5 HOH a 19 919 41 HOH HOH . H 5 HOH a 20 920 45 HOH HOH . H 5 HOH a 21 921 26 HOH HOH . H 5 HOH a 22 922 58 HOH HOH . H 5 HOH a 23 923 82 HOH HOH . H 5 HOH a 24 924 75 HOH HOH . H 5 HOH a 25 925 89 HOH HOH . H 5 HOH a 26 926 25 HOH HOH . H 5 HOH a 27 927 111 HOH HOH . H 5 HOH a 28 928 44 HOH HOH . H 5 HOH a 29 929 77 HOH HOH . H 5 HOH a 30 930 76 HOH HOH . H 5 HOH a 31 931 79 HOH HOH . H 5 HOH a 32 932 46 HOH HOH . H 5 HOH a 33 933 55 HOH HOH . H 5 HOH a 34 934 33 HOH HOH . H 5 HOH a 35 935 35 HOH HOH . H 5 HOH a 36 936 72 HOH HOH . H 5 HOH a 37 937 73 HOH HOH . H 5 HOH a 38 938 59 HOH HOH . H 5 HOH a 39 939 90 HOH HOH . H 5 HOH a 40 940 74 HOH HOH . H 5 HOH a 41 941 117 HOH HOH . H 5 HOH a 42 942 87 HOH HOH . H 5 HOH a 43 943 114 HOH HOH . H 5 HOH a 44 944 86 HOH HOH . H 5 HOH a 45 945 16 HOH HOH . H 5 HOH a 46 946 34 HOH HOH . H 5 HOH a 47 947 23 HOH HOH . H 5 HOH a 48 948 14 HOH HOH . H 5 HOH a 49 949 85 HOH HOH . H 5 HOH a 50 950 31 HOH HOH . I 5 HOH b 1 901 106 HOH HOH . I 5 HOH b 2 902 52 HOH HOH . I 5 HOH b 3 903 104 HOH HOH . I 5 HOH b 4 904 43 HOH HOH . I 5 HOH b 5 905 39 HOH HOH . I 5 HOH b 6 906 118 HOH HOH . I 5 HOH b 7 907 37 HOH HOH . I 5 HOH b 8 908 54 HOH HOH . I 5 HOH b 9 909 53 HOH HOH . I 5 HOH b 10 910 3 HOH HOH . I 5 HOH b 11 911 70 HOH HOH . I 5 HOH b 12 912 21 HOH HOH . I 5 HOH b 13 913 68 HOH HOH . I 5 HOH b 14 914 18 HOH HOH . I 5 HOH b 15 915 67 HOH HOH . I 5 HOH b 16 916 71 HOH HOH . I 5 HOH b 17 917 49 HOH HOH . I 5 HOH b 18 918 109 HOH HOH . I 5 HOH b 19 919 19 HOH HOH . I 5 HOH b 20 920 66 HOH HOH . I 5 HOH b 21 921 2 HOH HOH . I 5 HOH b 22 922 5 HOH HOH . I 5 HOH b 23 923 92 HOH HOH . I 5 HOH b 24 924 20 HOH HOH . I 5 HOH b 25 925 42 HOH HOH . I 5 HOH b 26 926 65 HOH HOH . I 5 HOH b 27 927 94 HOH HOH . I 5 HOH b 28 928 120 HOH HOH . I 5 HOH b 29 929 11 HOH HOH . I 5 HOH b 30 930 61 HOH HOH . I 5 HOH b 31 931 69 HOH HOH . I 5 HOH b 32 932 63 HOH HOH . I 5 HOH b 33 933 38 HOH HOH . I 5 HOH b 34 934 95 HOH HOH . I 5 HOH b 35 935 57 HOH HOH . I 5 HOH b 36 936 13 HOH HOH . I 5 HOH b 37 937 29 HOH HOH . I 5 HOH b 38 938 119 HOH HOH . I 5 HOH b 39 939 78 HOH HOH . I 5 HOH b 40 940 93 HOH HOH . I 5 HOH b 41 941 102 HOH HOH . I 5 HOH b 42 942 97 HOH HOH . I 5 HOH b 43 943 96 HOH HOH . I 5 HOH b 44 944 27 HOH HOH . I 5 HOH b 45 945 99 HOH HOH . I 5 HOH b 46 946 8 HOH HOH . I 5 HOH b 47 947 40 HOH HOH . I 5 HOH b 48 948 98 HOH HOH . I 5 HOH b 49 949 107 HOH HOH . I 5 HOH b 50 950 9 HOH HOH . I 5 HOH b 51 951 15 HOH HOH . I 5 HOH b 52 952 100 HOH HOH . I 5 HOH b 53 953 51 HOH HOH . I 5 HOH b 54 954 84 HOH HOH . I 5 HOH b 55 955 6 HOH HOH . I 5 HOH b 56 956 105 HOH HOH . I 5 HOH b 57 957 30 HOH HOH . I 5 HOH b 58 958 115 HOH HOH . I 5 HOH b 59 959 121 HOH HOH . I 5 HOH b 60 960 103 HOH HOH . I 5 HOH b 61 961 62 HOH HOH . I 5 HOH b 62 962 1 HOH HOH . I 5 HOH b 63 963 113 HOH HOH . I 5 HOH b 64 964 60 HOH HOH . I 5 HOH b 65 965 7 HOH HOH . I 5 HOH b 66 966 17 HOH HOH . I 5 HOH b 67 967 64 HOH HOH . I 5 HOH b 68 968 28 HOH HOH . I 5 HOH b 69 969 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 HFX . . . D 3 9.815 -43.167 -48.811 1 108.04 ? C4 HFX 802 a 1 HETATM 2 C C5 HFX . . . D 3 10.988 -45.121 -50.017 1 91.3 ? C5 HFX 802 a 1 HETATM 3 C C6 HFX . . . D 3 12.381 -45.702 -50.056 1 100.81 ? C6 HFX 802 a 1 HETATM 4 C C7 HFX . . . D 3 13.398 -44.69 -50.497 1 102.45 ? C7 HFX 802 a 1 HETATM 5 C C8 HFX . . . D 3 13.327 -43.371 -49.771 1 110.01 ? C8 HFX 802 a 1 HETATM 6 C C1 HFX . . . D 3 11.811 -41.773 -48.506 1 111.4 ? C1 HFX 802 a 1 HETATM 7 C C2 HFX . . . D 3 12.142 -42.953 -49.232 1 100.98 ? C2 HFX 802 a 1 HETATM 8 C C3 HFX . . . D 3 10.989 -43.77 -49.372 1 91.85 ? C3 HFX 802 a 1 HETATM 9 C C9 HFX . . . D 3 12.008 -38.954 -47.67 1 66.58 ? C9 HFX 802 a 1 HETATM 10 O O1 HFX . . . D 3 14.324 -42.663 -49.711 1 119.88 ? O1 HFX 802 a 1 HETATM 11 O O2 HFX . . . D 3 13.883 -40.144 -49.074 1 127.89 ? O2 HFX 802 a 1 HETATM 12 S S1 HFX . . . D 3 10.131 -41.653 -48.101 1 114.98 ? S1 HFX 802 a 1 HETATM 13 S S2 HFX . . . D 3 12.906 -40.471 -47.988 1 114.06 ? S2 HFX 802 a 1 HETATM 14 CL CL1 HFX . . . D 3 8.223 -43.797 -48.806 1 127.04 ? CL1 HFX 802 a 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #