data_7DT2 # _model_server_result.job_id VNgl7aL3lmk__VyMotg1sw _model_server_result.datetime_utc '2024-12-23 05:37:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":601}' # _entry.id 7DT2 # _exptl.entry_id 7DT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 444.248 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-[5-[5-(dimethylcarbamoyl)pyridin-3-yl]-1H-pyrrolo[2,3-b]pyridin-3-yl]-2-methanoyl-5-methoxy-phenyl]boronic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DT2 _cell.length_a 105.692 _cell.length_b 132.302 _cell.length_c 56.344 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 71 A LYS 271 1_555 C C21 HJ9 . A HJ9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 doub covale ? covale2 B NZ LYS 71 B LYS 271 1_555 D C21 HJ9 . B HJ9 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.278 doub # _chem_comp.formula 'C23 H21 B N4 O5' _chem_comp.formula_weight 444.248 _chem_comp.id HJ9 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-[5-[5-(dimethylcarbamoyl)pyridin-3-yl]-1H-pyrrolo[2,3-b]pyridin-3-yl]-2-methanoyl-5-methoxy-phenyl]boronic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 N03 HJ9 sing 150 n n N03 C04 HJ9 sing 151 n n N03 C02 HJ9 sing 152 n n O01 C02 HJ9 doub 153 n n C02 C06 HJ9 sing 154 n n N13 C12 HJ9 doub 155 n y N13 C14 HJ9 sing 156 n y N15 C14 HJ9 sing 157 n y N15 C16 HJ9 sing 158 n y C12 C11 HJ9 sing 159 n y C42 C06 HJ9 doub 160 n y C42 C10 HJ9 sing 161 n y C14 C40 HJ9 doub 162 n y C06 C07 HJ9 sing 163 n y C16 C17 HJ9 doub 164 n y C11 C10 HJ9 sing 165 n n C11 C41 HJ9 doub 166 n y C40 C17 HJ9 sing 167 n y C40 C41 HJ9 sing 168 n y C10 C09 HJ9 doub 169 n y C17 C18 HJ9 sing 170 n n C07 N08 HJ9 doub 171 n y C19 C18 HJ9 doub 172 n y C19 C20 HJ9 sing 173 n y C21 C20 HJ9 sing 174 n n C18 C37 HJ9 sing 175 n y C09 N08 HJ9 sing 176 n y C20 C32 HJ9 doub 177 n y C37 O38 HJ9 sing 178 n n C37 C36 HJ9 doub 179 n y C32 C36 HJ9 sing 180 n y C32 B33 HJ9 sing 181 n n O38 C39 HJ9 sing 182 n n B33 O34 HJ9 sing 183 n n B33 O35 HJ9 sing 184 n n C04 H1 HJ9 sing 185 n n C04 H2 HJ9 sing 186 n n C04 H3 HJ9 sing 187 n n C05 H4 HJ9 sing 188 n n C05 H5 HJ9 sing 189 n n C05 H6 HJ9 sing 190 n n C07 H7 HJ9 sing 191 n n C09 H8 HJ9 sing 192 n n C12 H9 HJ9 sing 193 n n C16 H10 HJ9 sing 194 n n C19 H11 HJ9 sing 195 n n C21 H12 HJ9 sing 196 n n C36 H15 HJ9 sing 197 n n C39 H16 HJ9 sing 198 n n C39 H17 HJ9 sing 199 n n C39 H18 HJ9 sing 200 n n C41 H19 HJ9 sing 201 n n C42 H20 HJ9 sing 202 n n N15 H21 HJ9 sing 203 n n O35 H22 HJ9 sing 204 n n C21 O1 HJ9 doub 205 n n O34 H13 HJ9 sing 206 n n # _atom_sites.entry_id 7DT2 _atom_sites.fract_transf_matrix[1][1] 0.009461 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017748 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HJ9 A 1 601 271 HJ9 LLP . D 2 HJ9 B 1 601 271 HJ9 LLP . E 3 HOH A 1 701 22 HOH HOH . E 3 HOH A 2 702 90 HOH HOH . E 3 HOH A 3 703 30 HOH HOH . E 3 HOH A 4 704 136 HOH HOH . E 3 HOH A 5 705 26 HOH HOH . E 3 HOH A 6 706 84 HOH HOH . E 3 HOH A 7 707 159 HOH HOH . E 3 HOH A 8 708 155 HOH HOH . E 3 HOH A 9 709 85 HOH HOH . E 3 HOH A 10 710 18 HOH HOH . E 3 HOH A 11 711 127 HOH HOH . E 3 HOH A 12 712 131 HOH HOH . E 3 HOH A 13 713 112 HOH HOH . E 3 HOH A 14 714 75 HOH HOH . E 3 HOH A 15 715 2 HOH HOH . E 3 HOH A 16 716 12 HOH HOH . E 3 HOH A 17 717 3 HOH HOH . E 3 HOH A 18 718 52 HOH HOH . E 3 HOH A 19 719 20 HOH HOH . E 3 HOH A 20 720 6 HOH HOH . E 3 HOH A 21 721 76 HOH HOH . E 3 HOH A 22 722 71 HOH HOH . E 3 HOH A 23 723 78 HOH HOH . E 3 HOH A 24 724 39 HOH HOH . E 3 HOH A 25 725 147 HOH HOH . E 3 HOH A 26 726 77 HOH HOH . E 3 HOH A 27 727 24 HOH HOH . E 3 HOH A 28 728 13 HOH HOH . E 3 HOH A 29 729 7 HOH HOH . E 3 HOH A 30 730 101 HOH HOH . E 3 HOH A 31 731 68 HOH HOH . E 3 HOH A 32 732 33 HOH HOH . E 3 HOH A 33 733 99 HOH HOH . E 3 HOH A 34 734 55 HOH HOH . E 3 HOH A 35 735 141 HOH HOH . E 3 HOH A 36 736 41 HOH HOH . E 3 HOH A 37 737 65 HOH HOH . E 3 HOH A 38 738 8 HOH HOH . E 3 HOH A 39 739 43 HOH HOH . E 3 HOH A 40 740 66 HOH HOH . E 3 HOH A 41 741 54 HOH HOH . E 3 HOH A 42 742 40 HOH HOH . E 3 HOH A 43 743 154 HOH HOH . E 3 HOH A 44 744 160 HOH HOH . E 3 HOH A 45 745 29 HOH HOH . E 3 HOH A 46 746 64 HOH HOH . E 3 HOH A 47 747 152 HOH HOH . E 3 HOH A 48 748 21 HOH HOH . E 3 HOH A 49 749 58 HOH HOH . E 3 HOH A 50 750 135 HOH HOH . E 3 HOH A 51 751 11 HOH HOH . E 3 HOH A 52 752 123 HOH HOH . E 3 HOH A 53 753 139 HOH HOH . E 3 HOH A 54 754 28 HOH HOH . E 3 HOH A 55 755 4 HOH HOH . E 3 HOH A 56 756 50 HOH HOH . E 3 HOH A 57 757 59 HOH HOH . E 3 HOH A 58 758 106 HOH HOH . E 3 HOH A 59 759 62 HOH HOH . E 3 HOH A 60 760 130 HOH HOH . E 3 HOH A 61 761 151 HOH HOH . E 3 HOH A 62 762 5 HOH HOH . E 3 HOH A 63 763 122 HOH HOH . E 3 HOH A 64 764 98 HOH HOH . E 3 HOH A 65 765 91 HOH HOH . E 3 HOH A 66 766 23 HOH HOH . E 3 HOH A 67 767 63 HOH HOH . E 3 HOH A 68 768 15 HOH HOH . E 3 HOH A 69 769 70 HOH HOH . E 3 HOH A 70 770 46 HOH HOH . E 3 HOH A 71 771 102 HOH HOH . E 3 HOH A 72 772 107 HOH HOH . E 3 HOH A 73 773 133 HOH HOH . E 3 HOH A 74 774 69 HOH HOH . E 3 HOH A 75 775 49 HOH HOH . E 3 HOH A 76 776 31 HOH HOH . E 3 HOH A 77 777 87 HOH HOH . E 3 HOH A 78 778 72 HOH HOH . E 3 HOH A 79 779 61 HOH HOH . E 3 HOH A 80 780 124 HOH HOH . E 3 HOH A 81 781 132 HOH HOH . E 3 HOH A 82 782 97 HOH HOH . E 3 HOH A 83 783 14 HOH HOH . E 3 HOH A 84 784 162 HOH HOH . E 3 HOH A 85 785 137 HOH HOH . E 3 HOH A 86 786 109 HOH HOH . E 3 HOH A 87 787 96 HOH HOH . E 3 HOH A 88 788 118 HOH HOH . E 3 HOH A 89 789 161 HOH HOH . E 3 HOH A 90 790 1 HOH HOH . E 3 HOH A 91 791 82 HOH HOH . E 3 HOH A 92 792 38 HOH HOH . E 3 HOH A 93 793 81 HOH HOH . E 3 HOH A 94 794 100 HOH HOH . E 3 HOH A 95 795 37 HOH HOH . E 3 HOH A 96 796 156 HOH HOH . E 3 HOH A 97 797 116 HOH HOH . E 3 HOH A 98 798 108 HOH HOH . E 3 HOH A 99 799 121 HOH HOH . E 3 HOH A 100 800 86 HOH HOH . E 3 HOH A 101 801 146 HOH HOH . E 3 HOH A 102 802 158 HOH HOH . E 3 HOH A 103 803 125 HOH HOH . E 3 HOH A 104 804 129 HOH HOH . E 3 HOH A 105 805 134 HOH HOH . E 3 HOH A 106 806 145 HOH HOH . E 3 HOH A 107 807 111 HOH HOH . E 3 HOH A 108 808 149 HOH HOH . F 3 HOH B 1 701 34 HOH HOH . F 3 HOH B 2 702 144 HOH HOH . F 3 HOH B 3 703 51 HOH HOH . F 3 HOH B 4 704 89 HOH HOH . F 3 HOH B 5 705 32 HOH HOH . F 3 HOH B 6 706 114 HOH HOH . F 3 HOH B 7 707 126 HOH HOH . F 3 HOH B 8 708 16 HOH HOH . F 3 HOH B 9 709 74 HOH HOH . F 3 HOH B 10 710 83 HOH HOH . F 3 HOH B 11 711 9 HOH HOH . F 3 HOH B 12 712 48 HOH HOH . F 3 HOH B 13 713 27 HOH HOH . F 3 HOH B 14 714 150 HOH HOH . F 3 HOH B 15 715 128 HOH HOH . F 3 HOH B 16 716 42 HOH HOH . F 3 HOH B 17 717 45 HOH HOH . F 3 HOH B 18 718 105 HOH HOH . F 3 HOH B 19 719 35 HOH HOH . F 3 HOH B 20 720 25 HOH HOH . F 3 HOH B 21 721 60 HOH HOH . F 3 HOH B 22 722 53 HOH HOH . F 3 HOH B 23 723 95 HOH HOH . F 3 HOH B 24 724 80 HOH HOH . F 3 HOH B 25 725 104 HOH HOH . F 3 HOH B 26 726 17 HOH HOH . F 3 HOH B 27 727 138 HOH HOH . F 3 HOH B 28 728 44 HOH HOH . F 3 HOH B 29 729 117 HOH HOH . F 3 HOH B 30 730 92 HOH HOH . F 3 HOH B 31 731 148 HOH HOH . F 3 HOH B 32 732 153 HOH HOH . F 3 HOH B 33 733 93 HOH HOH . F 3 HOH B 34 734 19 HOH HOH . F 3 HOH B 35 735 10 HOH HOH . F 3 HOH B 36 736 67 HOH HOH . F 3 HOH B 37 737 119 HOH HOH . F 3 HOH B 38 738 36 HOH HOH . F 3 HOH B 39 739 88 HOH HOH . F 3 HOH B 40 740 103 HOH HOH . F 3 HOH B 41 741 113 HOH HOH . F 3 HOH B 42 742 57 HOH HOH . F 3 HOH B 43 743 94 HOH HOH . F 3 HOH B 44 744 115 HOH HOH . F 3 HOH B 45 745 164 HOH HOH . F 3 HOH B 46 746 142 HOH HOH . F 3 HOH B 47 747 79 HOH HOH . F 3 HOH B 48 748 110 HOH HOH . F 3 HOH B 49 749 56 HOH HOH . F 3 HOH B 50 750 47 HOH HOH . F 3 HOH B 51 751 73 HOH HOH . F 3 HOH B 52 752 163 HOH HOH . F 3 HOH B 53 753 140 HOH HOH . F 3 HOH B 54 754 120 HOH HOH . F 3 HOH B 55 755 143 HOH HOH . F 3 HOH B 56 756 157 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 B B33 HJ9 . . . D 2 131.865 56.052 14.066 1 54.59 ? B33 HJ9 601 B 1 HETATM 2 C C02 HJ9 . . . D 2 127.273 49.382 23.462 1 61.41 ? C02 HJ9 601 B 1 HETATM 3 C C04 HJ9 . . . D 2 126.762 46.903 22.832 1 59.52 ? C04 HJ9 601 B 1 HETATM 4 C C05 HJ9 . . . D 2 125.591 48.023 24.813 1 66.83 ? C05 HJ9 601 B 1 HETATM 5 C C06 HJ9 . . . D 2 128.307 49.524 22.271 1 55.93 ? C06 HJ9 601 B 1 HETATM 6 C C07 HJ9 . . . D 2 129.665 49.665 22.513 1 48.72 ? C07 HJ9 601 B 1 HETATM 7 C C09 HJ9 . . . D 2 130.133 49.787 20.249 1 52.24 ? C09 HJ9 601 B 1 HETATM 8 C C10 HJ9 . . . D 2 128.796 49.658 19.931 1 49.08 ? C10 HJ9 601 B 1 HETATM 9 C C11 HJ9 . . . D 2 128.285 49.644 18.442 1 51.46 ? C11 HJ9 601 B 1 HETATM 10 C C12 HJ9 . . . D 2 127.379 48.654 18.064 1 48.73 ? C12 HJ9 601 B 1 HETATM 11 C C14 HJ9 . . . D 2 127.296 49.491 15.898 1 50.46 ? C14 HJ9 601 B 1 HETATM 12 C C16 HJ9 . . . D 2 127.572 50.647 14.045 1 48.99 ? C16 HJ9 601 B 1 HETATM 13 C C17 HJ9 . . . D 2 128.383 51.273 15.001 1 51.91 ? C17 HJ9 601 B 1 HETATM 14 C C18 HJ9 . . . D 2 129.301 52.544 14.756 1 52.11 ? C18 HJ9 601 B 1 HETATM 15 C C19 HJ9 . . . D 2 128.777 53.662 14.105 1 52.51 ? C19 HJ9 601 B 1 HETATM 16 C C20 HJ9 . . . D 2 129.578 54.798 13.866 1 54.62 ? C20 HJ9 601 B 1 HETATM 17 C C21 HJ9 . . . D 2 128.953 56.005 13.143 1 60.24 ? C21 HJ9 601 B 1 HETATM 18 C C32 HJ9 . . . D 2 130.917 54.808 14.294 1 50.91 ? C32 HJ9 601 B 1 HETATM 19 C C36 HJ9 . . . D 2 131.443 53.687 14.951 1 52.03 ? C36 HJ9 601 B 1 HETATM 20 C C37 HJ9 . . . D 2 130.648 52.553 15.183 1 52.92 ? C37 HJ9 601 B 1 HETATM 21 C C39 HJ9 . . . D 2 132.619 51.419 15.925 1 50.22 ? C39 HJ9 601 B 1 HETATM 22 C C40 HJ9 . . . D 2 128.196 50.512 16.195 1 46.03 ? C40 HJ9 601 B 1 HETATM 23 C C41 HJ9 . . . D 2 128.707 50.594 17.505 1 47.26 ? C41 HJ9 601 B 1 HETATM 24 C C42 HJ9 . . . D 2 127.858 49.525 20.967 1 56.89 ? C42 HJ9 601 B 1 HETATM 25 N N03 HJ9 . . . D 2 126.539 48.109 23.707 1 66.22 ? N03 HJ9 601 B 1 HETATM 26 N N08 HJ9 . . . D 2 130.536 49.79 21.51 1 52.43 ? N08 HJ9 601 B 1 HETATM 27 N N13 HJ9 . . . D 2 126.916 48.603 16.821 1 47.13 ? N13 HJ9 601 B 1 HETATM 28 N N15 HJ9 . . . D 2 126.943 49.604 14.599 1 47.38 ? N15 HJ9 601 B 1 HETATM 29 O O01 HJ9 . . . D 2 127.078 50.296 24.155 1 67.15 ? O01 HJ9 601 B 1 HETATM 30 O O34 HJ9 . . . D 2 132.875 56.235 14.918 1 59.3 ? O34 HJ9 601 B 1 HETATM 31 O O35 HJ9 . . . D 2 131.96 56.619 12.838 1 66.87 ? O35 HJ9 601 B 1 HETATM 32 O O38 HJ9 . . . D 2 131.184 51.436 15.84 1 53.97 ? O38 HJ9 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 32 #