data_7DT8 # _model_server_result.job_id 5_DBYE0gM88UMw59S7sH7A _model_server_result.datetime_utc '2025-06-18 12:09:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7dt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 7DT8 # _exptl.entry_id 7DT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 274.656 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7DT8 _cell.length_a 42.942 _cell.length_b 85.839 _cell.length_c 63.282 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7DT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -42.942 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 98 A GLU 66 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc2 A O ASP 131 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc3 A OD1 ASP 131 A ASP 99 1_555 C CA CA . A CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc4 C CA CA . A CA 201 1_555 G O HOH . A HOH 318 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc5 C CA CA . A CA 201 1_555 G O HOH . A HOH 352 4_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc6 B OE1 GLU 98 B GLU 66 1_555 E CA CA . B CA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.784 ? metalc ? metalc7 E CA CA . B CA 201 1_555 H O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C14 H7 Cl O4' _chem_comp.formula_weight 274.656 _chem_comp.id HH9 _chem_comp.mon_nstd_flag . _chem_comp.name '4-chloranyl-9-oxidanylidene-xanthene-2-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAF CAE HH9 doub 110 n y CAF CAD HH9 sing 111 n y CAE CAC HH9 sing 112 n y CAD CAB HH9 doub 113 n y CAC CAA HH9 doub 114 n y CAB CAA HH9 sing 115 n y CAB OAI HH9 sing 116 n n CAA CAG HH9 sing 117 n n OAI CAJ HH9 sing 118 n n CL1 CAM HH9 sing 119 n n CAJ CAM HH9 doub 120 n y CAJ CAH HH9 sing 121 n y CAG OAS HH9 doub 122 n n CAG CAH HH9 sing 123 n n CAM CAN HH9 sing 124 n y CAH CAK HH9 doub 125 n y CAN CAL HH9 doub 126 n y CAK CAL HH9 sing 127 n y CAL CAO HH9 sing 128 n n CAO OAP HH9 doub 129 n n CAO OAQ HH9 sing 130 n n CAC H1 HH9 sing 131 n n CAD H2 HH9 sing 132 n n CAE H3 HH9 sing 133 n n CAF H4 HH9 sing 134 n n CAK H5 HH9 sing 135 n n CAN H6 HH9 sing 136 n n OAQ H7 HH9 sing 137 n n # _atom_sites.entry_id 7DT8 _atom_sites.fract_transf_matrix[1][1] 0.023287 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01165 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 201 150 CA CA . D 3 HH9 A 1 202 201 HH9 DRG . E 2 CA B 1 201 150 CA CA . F 3 HH9 B 1 202 200 HH9 DRG . G 4 HOH A 1 301 36 HOH HOH . G 4 HOH A 2 302 197 HOH HOH . G 4 HOH A 3 303 13 HOH HOH . G 4 HOH A 4 304 153 HOH HOH . G 4 HOH A 5 305 119 HOH HOH . G 4 HOH A 6 306 161 HOH HOH . G 4 HOH A 7 307 26 HOH HOH . G 4 HOH A 8 308 81 HOH HOH . G 4 HOH A 9 309 84 HOH HOH . G 4 HOH A 10 310 83 HOH HOH . G 4 HOH A 11 311 74 HOH HOH . G 4 HOH A 12 312 118 HOH HOH . G 4 HOH A 13 313 90 HOH HOH . G 4 HOH A 14 314 142 HOH HOH . G 4 HOH A 15 315 21 HOH HOH . G 4 HOH A 16 316 5 HOH HOH . G 4 HOH A 17 317 12 HOH HOH . G 4 HOH A 18 318 138 HOH HOH . G 4 HOH A 19 319 147 HOH HOH . G 4 HOH A 20 320 20 HOH HOH . G 4 HOH A 21 321 102 HOH HOH . G 4 HOH A 22 322 210 HOH HOH . G 4 HOH A 23 323 86 HOH HOH . G 4 HOH A 24 324 132 HOH HOH . G 4 HOH A 25 325 16 HOH HOH . G 4 HOH A 26 326 24 HOH HOH . G 4 HOH A 27 327 38 HOH HOH . G 4 HOH A 28 328 89 HOH HOH . G 4 HOH A 29 329 6 HOH HOH . G 4 HOH A 30 330 43 HOH HOH . G 4 HOH A 31 331 167 HOH HOH . G 4 HOH A 32 332 30 HOH HOH . G 4 HOH A 33 333 60 HOH HOH . G 4 HOH A 34 334 58 HOH HOH . G 4 HOH A 35 335 44 HOH HOH . G 4 HOH A 36 336 70 HOH HOH . G 4 HOH A 37 337 55 HOH HOH . G 4 HOH A 38 338 183 HOH HOH . G 4 HOH A 39 339 178 HOH HOH . G 4 HOH A 40 340 3 HOH HOH . G 4 HOH A 41 341 22 HOH HOH . G 4 HOH A 42 342 45 HOH HOH . G 4 HOH A 43 343 85 HOH HOH . G 4 HOH A 44 344 100 HOH HOH . G 4 HOH A 45 345 10 HOH HOH . G 4 HOH A 46 346 188 HOH HOH . G 4 HOH A 47 347 154 HOH HOH . G 4 HOH A 48 348 50 HOH HOH . G 4 HOH A 49 349 18 HOH HOH . G 4 HOH A 50 350 34 HOH HOH . G 4 HOH A 51 351 35 HOH HOH . G 4 HOH A 52 352 99 HOH HOH . G 4 HOH A 53 353 152 HOH HOH . G 4 HOH A 54 354 159 HOH HOH . G 4 HOH A 55 355 137 HOH HOH . G 4 HOH A 56 356 126 HOH HOH . G 4 HOH A 57 357 187 HOH HOH . G 4 HOH A 58 358 208 HOH HOH . G 4 HOH A 59 359 78 HOH HOH . G 4 HOH A 60 360 133 HOH HOH . G 4 HOH A 61 361 80 HOH HOH . G 4 HOH A 62 362 156 HOH HOH . G 4 HOH A 63 363 185 HOH HOH . G 4 HOH A 64 364 97 HOH HOH . G 4 HOH A 65 365 27 HOH HOH . G 4 HOH A 66 366 145 HOH HOH . G 4 HOH A 67 367 101 HOH HOH . G 4 HOH A 68 368 129 HOH HOH . G 4 HOH A 69 369 203 HOH HOH . G 4 HOH A 70 370 28 HOH HOH . G 4 HOH A 71 371 47 HOH HOH . G 4 HOH A 72 372 135 HOH HOH . G 4 HOH A 73 373 125 HOH HOH . G 4 HOH A 74 374 170 HOH HOH . G 4 HOH A 75 375 115 HOH HOH . G 4 HOH A 76 376 164 HOH HOH . G 4 HOH A 77 377 157 HOH HOH . G 4 HOH A 78 378 64 HOH HOH . G 4 HOH A 79 379 61 HOH HOH . G 4 HOH A 80 380 124 HOH HOH . G 4 HOH A 81 381 128 HOH HOH . G 4 HOH A 82 382 93 HOH HOH . G 4 HOH A 83 383 134 HOH HOH . G 4 HOH A 84 384 149 HOH HOH . G 4 HOH A 85 385 172 HOH HOH . G 4 HOH A 86 386 168 HOH HOH . G 4 HOH A 87 387 165 HOH HOH . G 4 HOH A 88 388 182 HOH HOH . G 4 HOH A 89 389 207 HOH HOH . G 4 HOH A 90 390 200 HOH HOH . G 4 HOH A 91 391 189 HOH HOH . G 4 HOH A 92 392 39 HOH HOH . G 4 HOH A 93 393 51 HOH HOH . G 4 HOH A 94 394 177 HOH HOH . G 4 HOH A 95 395 87 HOH HOH . G 4 HOH A 96 396 179 HOH HOH . G 4 HOH A 97 397 158 HOH HOH . G 4 HOH A 98 398 155 HOH HOH . G 4 HOH A 99 399 192 HOH HOH . G 4 HOH A 100 400 130 HOH HOH . G 4 HOH A 101 401 204 HOH HOH . G 4 HOH A 102 402 144 HOH HOH . G 4 HOH A 103 403 196 HOH HOH . G 4 HOH A 104 404 96 HOH HOH . G 4 HOH A 105 405 120 HOH HOH . G 4 HOH A 106 406 206 HOH HOH . G 4 HOH A 107 407 151 HOH HOH . G 4 HOH A 108 408 162 HOH HOH . H 4 HOH B 1 301 107 HOH HOH . H 4 HOH B 2 302 52 HOH HOH . H 4 HOH B 3 303 116 HOH HOH . H 4 HOH B 4 304 88 HOH HOH . H 4 HOH B 5 305 17 HOH HOH . H 4 HOH B 6 306 121 HOH HOH . H 4 HOH B 7 307 65 HOH HOH . H 4 HOH B 8 308 11 HOH HOH . H 4 HOH B 9 309 49 HOH HOH . H 4 HOH B 10 310 75 HOH HOH . H 4 HOH B 11 311 31 HOH HOH . H 4 HOH B 12 312 111 HOH HOH . H 4 HOH B 13 313 94 HOH HOH . H 4 HOH B 14 314 73 HOH HOH . H 4 HOH B 15 315 108 HOH HOH . H 4 HOH B 16 316 1 HOH HOH . H 4 HOH B 17 317 29 HOH HOH . H 4 HOH B 18 318 56 HOH HOH . H 4 HOH B 19 319 67 HOH HOH . H 4 HOH B 20 320 8 HOH HOH . H 4 HOH B 21 321 112 HOH HOH . H 4 HOH B 22 322 79 HOH HOH . H 4 HOH B 23 323 123 HOH HOH . H 4 HOH B 24 324 40 HOH HOH . H 4 HOH B 25 325 48 HOH HOH . H 4 HOH B 26 326 2 HOH HOH . H 4 HOH B 27 327 181 HOH HOH . H 4 HOH B 28 328 190 HOH HOH . H 4 HOH B 29 329 53 HOH HOH . H 4 HOH B 30 330 63 HOH HOH . H 4 HOH B 31 331 15 HOH HOH . H 4 HOH B 32 332 103 HOH HOH . H 4 HOH B 33 333 32 HOH HOH . H 4 HOH B 34 334 4 HOH HOH . H 4 HOH B 35 335 131 HOH HOH . H 4 HOH B 36 336 184 HOH HOH . H 4 HOH B 37 337 82 HOH HOH . H 4 HOH B 38 338 211 HOH HOH . H 4 HOH B 39 339 42 HOH HOH . H 4 HOH B 40 340 205 HOH HOH . H 4 HOH B 41 341 9 HOH HOH . H 4 HOH B 42 342 33 HOH HOH . H 4 HOH B 43 343 209 HOH HOH . H 4 HOH B 44 344 104 HOH HOH . H 4 HOH B 45 345 122 HOH HOH . H 4 HOH B 46 346 77 HOH HOH . H 4 HOH B 47 347 62 HOH HOH . H 4 HOH B 48 348 175 HOH HOH . H 4 HOH B 49 349 106 HOH HOH . H 4 HOH B 50 350 23 HOH HOH . H 4 HOH B 51 351 148 HOH HOH . H 4 HOH B 52 352 191 HOH HOH . H 4 HOH B 53 353 114 HOH HOH . H 4 HOH B 54 354 198 HOH HOH . H 4 HOH B 55 355 194 HOH HOH . H 4 HOH B 56 356 71 HOH HOH . H 4 HOH B 57 357 7 HOH HOH . H 4 HOH B 58 358 41 HOH HOH . H 4 HOH B 59 359 160 HOH HOH . H 4 HOH B 60 360 186 HOH HOH . H 4 HOH B 61 361 95 HOH HOH . H 4 HOH B 62 362 66 HOH HOH . H 4 HOH B 63 363 201 HOH HOH . H 4 HOH B 64 364 146 HOH HOH . H 4 HOH B 65 365 19 HOH HOH . H 4 HOH B 66 366 37 HOH HOH . H 4 HOH B 67 367 72 HOH HOH . H 4 HOH B 68 368 171 HOH HOH . H 4 HOH B 69 369 14 HOH HOH . H 4 HOH B 70 370 59 HOH HOH . H 4 HOH B 71 371 46 HOH HOH . H 4 HOH B 72 372 173 HOH HOH . H 4 HOH B 73 373 92 HOH HOH . H 4 HOH B 74 374 91 HOH HOH . H 4 HOH B 75 375 69 HOH HOH . H 4 HOH B 76 376 176 HOH HOH . H 4 HOH B 77 377 180 HOH HOH . H 4 HOH B 78 378 195 HOH HOH . H 4 HOH B 79 379 105 HOH HOH . H 4 HOH B 80 380 140 HOH HOH . H 4 HOH B 81 381 193 HOH HOH . H 4 HOH B 82 382 54 HOH HOH . H 4 HOH B 83 383 117 HOH HOH . H 4 HOH B 84 384 150 HOH HOH . H 4 HOH B 85 385 25 HOH HOH . H 4 HOH B 86 386 169 HOH HOH . H 4 HOH B 87 387 98 HOH HOH . H 4 HOH B 88 388 110 HOH HOH . H 4 HOH B 89 389 141 HOH HOH . H 4 HOH B 90 390 109 HOH HOH . H 4 HOH B 91 391 174 HOH HOH . H 4 HOH B 92 392 163 HOH HOH . H 4 HOH B 93 393 143 HOH HOH . H 4 HOH B 94 394 166 HOH HOH . H 4 HOH B 95 395 113 HOH HOH . H 4 HOH B 96 396 68 HOH HOH . H 4 HOH B 97 397 76 HOH HOH . H 4 HOH B 98 398 127 HOH HOH . H 4 HOH B 99 399 57 HOH HOH . H 4 HOH B 100 400 136 HOH HOH . H 4 HOH B 101 401 199 HOH HOH . H 4 HOH B 102 402 202 HOH HOH . H 4 HOH B 103 403 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA HH9 . . . D 3 -21.425 -0.025 -6.449 0.5 17.89 ? CAA HH9 202 A 1 HETATM 2 C CAB HH9 . . . D 3 -22.419 0.668 -7.135 0.5 19.55 ? CAB HH9 202 A 1 HETATM 3 C CAC HH9 . . . D 3 -20.451 -0.702 -7.176 0.5 19.52 ? CAC HH9 202 A 1 HETATM 4 C CAD HH9 . . . D 3 -22.436 0.692 -8.525 0.5 21.89 ? CAD HH9 202 A 1 HETATM 5 C CAE HH9 . . . D 3 -20.463 -0.683 -8.566 0.5 21.91 ? CAE HH9 202 A 1 HETATM 6 C CAF HH9 . . . D 3 -21.456 0.016 -9.245 0.5 21.14 ? CAF HH9 202 A 1 HETATM 7 C CAG HH9 . . . D 3 -21.399 -0.054 -5.061 0.5 20.54 ? CAG HH9 202 A 1 HETATM 8 C CAH HH9 . . . D 3 -22.371 0.657 -4.373 0.5 21.05 ? CAH HH9 202 A 1 HETATM 9 C CAJ HH9 . . . D 3 -23.303 1.415 -5.061 0.5 19.23 ? CAJ HH9 202 A 1 HETATM 10 C CAK HH9 . . . D 3 -22.414 0.654 -2.986 0.5 21.11 ? CAK HH9 202 A 1 HETATM 11 C CAL HH9 . . . D 3 -23.385 1.396 -2.315 0.5 21.21 ? CAL HH9 202 A 1 HETATM 12 C CAM HH9 . . . D 3 -24.276 2.167 -4.412 0.5 19.95 ? CAM HH9 202 A 1 HETATM 13 C CAN HH9 . . . D 3 -24.313 2.155 -3.023 0.5 21.4 ? CAN HH9 202 A 1 HETATM 14 C CAO HH9 . . . D 3 -23.404 1.391 -0.925 0.5 25 ? CAO HH9 202 A 1 HETATM 15 O OAI HH9 . . . D 3 -23.374 1.348 -6.426 0.5 18.35 ? OAI HH9 202 A 1 HETATM 16 O OAP HH9 . . . D 3 -24.375 1.877 -0.308 0.5 29.29 ? OAP HH9 202 A 1 HETATM 17 O OAQ HH9 . . . D 3 -22.418 0.948 -0.295 0.5 27.74 ? OAQ HH9 202 A 1 HETATM 18 O OAS HH9 . . . D 3 -20.526 -0.682 -4.456 0.5 21.05 ? OAS HH9 202 A 1 HETATM 19 CL CL1 HH9 . . . D 3 -25.408 3.124 -5.334 0.5 22.69 ? CL1 HH9 202 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 83 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 1190 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 19 #